BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025904
         (1164 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273989.2| PREDICTED: pentatricopeptide repeat-containi...   468   e-129
emb|CBI32643.3| unnamed protein product [Vitis vinifera]              468   e-129
ref|XP_002323442.1| predicted protein [Populus trichocarpa] gi|2...   460   e-127
ref|XP_002525213.1| pentatricopeptide repeat-containing protein,...   421   e-115
ref|XP_003550640.1| PREDICTED: pentatricopeptide repeat-containi...   417   e-114

>ref|XP_002273989.2| PREDICTED: pentatricopeptide repeat-containing protein At2g37320-like
            [Vitis vinifera]
          Length = 510

 Score =  468 bits (1204), Expect = e-129
 Identities = 239/390 (61%), Positives = 292/390 (74%), Gaps = 6/390 (1%)
 Frame = +2

Query: 11   KSKTQNVKALRVLDFITPNNKCTQQPQNHLRLIESCMQELQQPTHLDTTPCLSDKMYERN 190
            K KT+  K L +L+ ++P   C +  Q HLRLI+     L  PT+       SD     N
Sbjct: 34   KRKTKTHKQLGILNLVSPTTDCAENRQTHLRLIQDF---LPIPTNQFAQKRASDDFAHSN 90

Query: 191  NVCWGTLFIQ---MHRQGMSADASTLSCALS---SIRCLEKGVQLHCLAMKSGFYVYVYV 352
            ++   +  ++   ++ +    DAS LS ALS   S R L+ GVQ HCLA+++GF   VYV
Sbjct: 91   SLEETSNMLETNFLNEEESIVDASALSHALSLCASSRSLKSGVQFHCLAIRTGFVGNVYV 150

Query: 353  GSSLTSFYGKCGHLNEAYRVFEEIPVKNVVSWTAIIAGFAQNWDVDMCLMLYYRMRCSAS 532
            GS L SFY KCG L  AYRVFEE+PVKNVVSWTAIIAGFAQ W VD CL LY RMR S  
Sbjct: 151  GSCLISFYSKCGELCHAYRVFEEMPVKNVVSWTAIIAGFAQEWLVDGCLELYSRMRNSTL 210

Query: 533  KPNDFTFTSLLSVCTGSGSLGQGRSAHCQTIQMGFESYIHIGNVLISMYSKCGNVDEAFC 712
            KPND TFT LLS CTG GSLG+GRSAHCQTI+MGF+SY+H+ N LISMY KCGNV++A+ 
Sbjct: 211  KPNDLTFTCLLSTCTGGGSLGRGRSAHCQTIEMGFDSYVHVANALISMYCKCGNVEDAYY 270

Query: 713  IFECMRKRDLVSWNSMIAGYAQYGLAEEAIELHNEMKELKINPDAITFLGVLSSCRHAGL 892
            IFE M  +D+VSWNSMIAG+AQ+GLA +AI+L  EMK+ K+ PDAITFLGVLSSCRH GL
Sbjct: 271  IFERMDGKDIVSWNSMIAGHAQHGLAVQAIDLFEEMKKQKLKPDAITFLGVLSSCRHVGL 330

Query: 893  VEYGRICFNSMVQYGVEPDLDHYSCIVDLLGRAGMVKEANEFINKMPICPNAVIWGSLLS 1072
            V+ G+  FNSMV++GV+P+LDH++C+VDLLGRAG+++EA +FI KMPI PNA+IWGSLLS
Sbjct: 331  VKQGQFYFNSMVEHGVKPELDHFACVVDLLGRAGLLEEARDFIVKMPIHPNAIIWGSLLS 390

Query: 1073 SCRLHGEVLIGIEAAENRLLLVPSCAATHV 1162
            SCRLHG V +GIEAAENRLLL P CAATH+
Sbjct: 391  SCRLHGSVWLGIEAAENRLLLEPECAATHL 420


>emb|CBI32643.3| unnamed protein product [Vitis vinifera]
          Length = 1400

 Score =  468 bits (1204), Expect = e-129
 Identities = 239/390 (61%), Positives = 292/390 (74%), Gaps = 6/390 (1%)
 Frame = +2

Query: 11   KSKTQNVKALRVLDFITPNNKCTQQPQNHLRLIESCMQELQQPTHLDTTPCLSDKMYERN 190
            K KT+  K L +L+ ++P   C +  Q HLRLI+     L  PT+       SD     N
Sbjct: 895  KRKTKTHKQLGILNLVSPTTDCAENRQTHLRLIQDF---LPIPTNQFAQKRASDDFAHSN 951

Query: 191  NVCWGTLFIQ---MHRQGMSADASTLSCALS---SIRCLEKGVQLHCLAMKSGFYVYVYV 352
            ++   +  ++   ++ +    DAS LS ALS   S R L+ GVQ HCLA+++GF   VYV
Sbjct: 952  SLEETSNMLETNFLNEEESIVDASALSHALSLCASSRSLKSGVQFHCLAIRTGFVGNVYV 1011

Query: 353  GSSLTSFYGKCGHLNEAYRVFEEIPVKNVVSWTAIIAGFAQNWDVDMCLMLYYRMRCSAS 532
            GS L SFY KCG L  AYRVFEE+PVKNVVSWTAIIAGFAQ W VD CL LY RMR S  
Sbjct: 1012 GSCLISFYSKCGELCHAYRVFEEMPVKNVVSWTAIIAGFAQEWLVDGCLELYSRMRNSTL 1071

Query: 533  KPNDFTFTSLLSVCTGSGSLGQGRSAHCQTIQMGFESYIHIGNVLISMYSKCGNVDEAFC 712
            KPND TFT LLS CTG GSLG+GRSAHCQTI+MGF+SY+H+ N LISMY KCGNV++A+ 
Sbjct: 1072 KPNDLTFTCLLSTCTGGGSLGRGRSAHCQTIEMGFDSYVHVANALISMYCKCGNVEDAYY 1131

Query: 713  IFECMRKRDLVSWNSMIAGYAQYGLAEEAIELHNEMKELKINPDAITFLGVLSSCRHAGL 892
            IFE M  +D+VSWNSMIAG+AQ+GLA +AI+L  EMK+ K+ PDAITFLGVLSSCRH GL
Sbjct: 1132 IFERMDGKDIVSWNSMIAGHAQHGLAVQAIDLFEEMKKQKLKPDAITFLGVLSSCRHVGL 1191

Query: 893  VEYGRICFNSMVQYGVEPDLDHYSCIVDLLGRAGMVKEANEFINKMPICPNAVIWGSLLS 1072
            V+ G+  FNSMV++GV+P+LDH++C+VDLLGRAG+++EA +FI KMPI PNA+IWGSLLS
Sbjct: 1192 VKQGQFYFNSMVEHGVKPELDHFACVVDLLGRAGLLEEARDFIVKMPIHPNAIIWGSLLS 1251

Query: 1073 SCRLHGEVLIGIEAAENRLLLVPSCAATHV 1162
            SCRLHG V +GIEAAENRLLL P CAATH+
Sbjct: 1252 SCRLHGSVWLGIEAAENRLLLEPECAATHL 1281


>ref|XP_002323442.1| predicted protein [Populus trichocarpa] gi|222868072|gb|EEF05203.1|
            predicted protein [Populus trichocarpa]
          Length = 526

 Score =  460 bits (1184), Expect = e-127
 Identities = 238/390 (61%), Positives = 282/390 (72%), Gaps = 13/390 (3%)
 Frame = +2

Query: 32   KALRVLDFITPNNKCTQQPQNHLRLIESCMQELQQPTHLDT------TPCLSDKMYERNN 193
            KALR+LD ITP        QNHLR+I+   Q     T          +P   +  +   +
Sbjct: 46   KALRILDIITPKTTAPTNGQNHLRVIQDFFQAHSNRTSEQRLSNDFISPNSDNGDFSVFD 105

Query: 194  VCWGTLFIQ----MHRQGMSADASTLSCALSSI---RCLEKGVQLHCLAMKSGFYVYVYV 352
                + FI      +   +S DAS LS A+SS    R L  G+Q HCLA+ +GF    Y+
Sbjct: 106  EILESSFINNDEDSNATSLSFDASVLSNAVSSCASTRDLRGGIQYHCLAISAGFIANAYI 165

Query: 353  GSSLTSFYGKCGHLNEAYRVFEEIPVKNVVSWTAIIAGFAQNWDVDMCLMLYYRMRCSAS 532
            GSSL +FYGKCG L+ AY+VF+E+PV+NVVSWTAII+GFAQ+W VDMCL LY  MR S  
Sbjct: 166  GSSLVTFYGKCGELDNAYKVFKEMPVRNVVSWTAIISGFAQDWQVDMCLQLYCLMRNSTL 225

Query: 533  KPNDFTFTSLLSVCTGSGSLGQGRSAHCQTIQMGFESYIHIGNVLISMYSKCGNVDEAFC 712
            KPNDFTFTSLLS CTGSG+LGQGRSAHCQ I+MGF SY+HI N L+SMY KCGNV++AF 
Sbjct: 226  KPNDFTFTSLLSACTGSGALGQGRSAHCQIIEMGFVSYLHIANALVSMYCKCGNVEDAFH 285

Query: 713  IFECMRKRDLVSWNSMIAGYAQYGLAEEAIELHNEMKELKINPDAITFLGVLSSCRHAGL 892
            IFE M  +D+VSWNSMIAGYAQ+GLA + I L   MK   + PDAITFLGVLSSCRHAG 
Sbjct: 286  IFENMVGKDIVSWNSMIAGYAQHGLAVQGIGLFERMKSQGVKPDAITFLGVLSSCRHAGF 345

Query: 893  VEYGRICFNSMVQYGVEPDLDHYSCIVDLLGRAGMVKEANEFINKMPICPNAVIWGSLLS 1072
            VE GR  FNSMV+YGV+P+LDHYSCIVDLLGRAG+++EA  FI +MP+ PNAVIWGSL+S
Sbjct: 346  VEGGRNYFNSMVEYGVKPELDHYSCIVDLLGRAGLLEEAQYFIERMPVSPNAVIWGSLVS 405

Query: 1073 SCRLHGEVLIGIEAAENRLLLVPSCAATHV 1162
            SCRLHG V IGI+AAEN LLL P CAATHV
Sbjct: 406  SCRLHGSVWIGIQAAENTLLLEPECAATHV 435


>ref|XP_002525213.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223535510|gb|EEF37179.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 501

 Score =  421 bits (1083), Expect = e-115
 Identities = 218/381 (57%), Positives = 274/381 (71%), Gaps = 7/381 (1%)
 Frame = +2

Query: 41   RVLDFITPNNKCTQQPQNHLRLIESCMQ----ELQQPTHLDTTPCLSDKMYERNNVCWGT 208
            R+LD ++P    T   Q HLRL++  ++    ++ +     T+  L +  +  N     T
Sbjct: 41   RILDILSPKISSTPLRQTHLRLLDDLLRHSSHQITEHPLTTTSNLLHEYSFVFNEESCST 100

Query: 209  LFIQMHRQGMSADASTLSCALSSI---RCLEKGVQLHCLAMKSGFYVYVYVGSSLTSFYG 379
              I         DAS+LS A+SS    R L  G+Q HCLA+ SGF    YVGSSL + YG
Sbjct: 101  SLI--------FDASSLSSAVSSCASSRDLPGGIQFHCLAITSGFISNSYVGSSLITLYG 152

Query: 380  KCGHLNEAYRVFEEIPVKNVVSWTAIIAGFAQNWDVDMCLMLYYRMRCSASKPNDFTFTS 559
            KCG L+ A+++F E+PV+NVV+WTAII+GFAQ   VD+CL L+  MR S  KPNDFTFTS
Sbjct: 153  KCGKLDNAHKLFHEMPVRNVVTWTAIISGFAQECQVDVCLELFSVMRNSTLKPNDFTFTS 212

Query: 560  LLSVCTGSGSLGQGRSAHCQTIQMGFESYIHIGNVLISMYSKCGNVDEAFCIFECMRKRD 739
            LLS CTGSG+LGQG SAHCQ IQMGF SY+H+ N LISMY K G+V +AF IF  +  +D
Sbjct: 213  LLSACTGSGALGQGTSAHCQIIQMGFHSYLHVANALISMYCKSGSVHDAFYIFNNIYSKD 272

Query: 740  LVSWNSMIAGYAQYGLAEEAIELHNEMKELKINPDAITFLGVLSSCRHAGLVEYGRICFN 919
            +VSWNSMI+GYAQ+GLA +AI+L  +M +L + PD+ITFLGVLS+CRHAG V+ GR  FN
Sbjct: 273  IVSWNSMISGYAQHGLAMQAIDLFEKMTKLGVKPDSITFLGVLSACRHAGFVQGGRNYFN 332

Query: 920  SMVQYGVEPDLDHYSCIVDLLGRAGMVKEANEFINKMPICPNAVIWGSLLSSCRLHGEVL 1099
            SMV+Y + P LDHYSC+VDLLGRAG+++EA + I +MPI PNAVIWGSLLSSCRLHG V 
Sbjct: 333  SMVEYHLRPQLDHYSCLVDLLGRAGLIEEALDIILRMPILPNAVIWGSLLSSCRLHGSVW 392

Query: 1100 IGIEAAENRLLLVPSCAATHV 1162
            IGI+AAE RLLL P+CAATHV
Sbjct: 393  IGIQAAEQRLLLEPACAATHV 413


>ref|XP_003550640.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37320-like
            [Glycine max]
          Length = 501

 Score =  417 bits (1073), Expect = e-114
 Identities = 222/392 (56%), Positives = 278/392 (70%), Gaps = 8/392 (2%)
 Frame = +2

Query: 5    TSKSKTQNVKALRVLDFITPNNKCT--QQPQNHLRLIESCMQELQQPT--HLDTTPCLSD 172
            T++S      A RVL+ ++   + T   + Q+HLRLI+  ++        H   T   + 
Sbjct: 29   TTRSSKGLAIAQRVLNLLSSQKRGTTVDRRQSHLRLIDDMLENYVTIPLGHNSATNGTTA 88

Query: 173  KMYERNNVCWGTLFIQMH-RQGMSADASTLSCALSSI---RCLEKGVQLHCLAMKSGFYV 340
            ++   ++V        +H  QG   D   LS A+SS    R L  G+Q HCLA+ +GF  
Sbjct: 89   EITIESSV--------LHMEQGFGVDVFFLSQAVSSCGSKRDLWGGIQYHCLAITTGFVA 140

Query: 341  YVYVGSSLTSFYGKCGHLNEAYRVFEEIPVKNVVSWTAIIAGFAQNWDVDMCLMLYYRMR 520
             VYVGSSL S Y +C  L +A RVFEE+PV+NVVSWTAIIAGFAQ W VDMCL L+ +MR
Sbjct: 141  SVYVGSSLISLYSRCAFLGDACRVFEEMPVRNVVSWTAIIAGFAQEWHVDMCLELFQQMR 200

Query: 521  CSASKPNDFTFTSLLSVCTGSGSLGQGRSAHCQTIQMGFESYIHIGNVLISMYSKCGNVD 700
             S  +PN FT+TSLLS C GSG+LG GR AHCQ I+MGF SY+HI N LISMYSKCG +D
Sbjct: 201  GSDLRPNYFTYTSLLSACMGSGALGHGRCAHCQIIRMGFHSYLHIENALISMYSKCGAID 260

Query: 701  EAFCIFECMRKRDLVSWNSMIAGYAQYGLAEEAIELHNEMKELKINPDAITFLGVLSSCR 880
            +A  IFE M  RD+V+WN+MI+GYAQ+GLA+EAI L  EM +  +NPDA+T+LGVLSSCR
Sbjct: 261  DALHIFENMVSRDVVTWNTMISGYAQHGLAQEAINLFEEMIKQGVNPDAVTYLGVLSSCR 320

Query: 881  HAGLVEYGRICFNSMVQYGVEPDLDHYSCIVDLLGRAGMVKEANEFINKMPICPNAVIWG 1060
            H GLV+ G++ FNSMV++GV+P LDHYSCIVDLLGRAG++ EA +FI  MPI PNAV+WG
Sbjct: 321  HGGLVKEGQVYFNSMVEHGVQPGLDHYSCIVDLLGRAGLLLEARDFIQNMPIFPNAVVWG 380

Query: 1061 SLLSSCRLHGEVLIGIEAAENRLLLVPSCAAT 1156
            SLLSS RLHG V IGIEAAENRLL+ P C+AT
Sbjct: 381  SLLSSSRLHGSVPIGIEAAENRLLMEPGCSAT 412