BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025896
         (406 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002867333.1| pentatricopeptide repeat-containing protein ...    75   4e-12
ref|XP_001785140.1| predicted protein [Physcomitrella patens sub...    75   4e-12
ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selag...    75   7e-12
ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Sela...    75   7e-12
ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containi...    74   9e-12

>ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297313169|gb|EFH43592.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 792

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 36/88 (40%), Positives = 49/88 (55%)
 Frame = -3

Query: 266 EEALDVLDLMETQGMKLDPRLICILLKSCTQEQNLDFGKTIHSKIVGTELETDVYVVNNL 87
           E+A+ +   M+      +P  I  +L +C Q   L  GK +H  +  T+ E+ +YV   L
Sbjct: 402 EDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTAL 461

Query: 86  INFYAKCGCLKTARNLFDEMPNKNEVTW 3
           I  YAKCG +  AR LFD MP KNEVTW
Sbjct: 462 IGMYAKCGSIAEARRLFDFMPKKNEVTW 489


>ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
           gi|162663262|gb|EDQ50036.1| predicted protein
           [Physcomitrella patens subsp. patens]
          Length = 922

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 39/89 (43%), Positives = 53/89 (59%)
 Frame = -3

Query: 269 MEEALDVLDLMETQGMKLDPRLICILLKSCTQEQNLDFGKTIHSKIVGTELETDVYVVNN 90
           MEEA  +   M+ +G + D      LL  C    +L+ GK +HS+IV T  E DV V   
Sbjct: 334 MEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQIVRTAWEADVTVATA 393

Query: 89  LINFYAKCGCLKTARNLFDEMPNKNEVTW 3
           LI+ YAKCG L+ AR +F++MP KN V+W
Sbjct: 394 LISMYAKCGSLEEARKVFNQMPEKNAVSW 422



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 39/115 (33%), Positives = 63/115 (54%)
 Frame = -3

Query: 347 SIFPSPLHRITKSQHVARNNWSFEQRMEEALDVLDLMETQGMKLDPRLICILLKSCTQEQ 168
           ++F S   +   S +   + ++   R +EA+D+   M+ +G+K +      +L +C    
Sbjct: 107 NVFQSMEDKDVVSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSACQTPI 166

Query: 167 NLDFGKTIHSKIVGTELETDVYVVNNLINFYAKCGCLKTARNLFDEMPNKNEVTW 3
            L+FG+ IHS I     E+DV V   LIN Y KCG L+ AR +F+EM  +N V+W
Sbjct: 167 VLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSW 221



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 31/103 (30%), Positives = 55/103 (53%)
 Frame = -3

Query: 311 SQHVARNNWSFEQRMEEALDVLDLMETQGMKLDPRLICILLKSCTQEQNLDFGKTIHSKI 132
           S  V RN W    + +     + L+  +G++ +       L+ C Q ++L  GK +H  +
Sbjct: 22  SAKVGRNTW----KGKSIRGGVQLLGKRGVQANLNFYARRLQECVQAKSLAEGKKVHDHM 77

Query: 131 VGTELETDVYVVNNLINFYAKCGCLKTARNLFDEMPNKNEVTW 3
              + E D+Y+ N LI+ Y+KCG ++ A N+F  M +K+ V+W
Sbjct: 78  RSAQFEPDIYLNNMLISMYSKCGSIEDANNVFQSMEDKDVVSW 120



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 26/64 (40%), Positives = 39/64 (60%)
 Frame = -3

Query: 194 LLKSCTQEQNLDFGKTIHSKIVGTELETDVYVVNNLINFYAKCGCLKTARNLFDEMPNKN 15
           +L +CT   +L+ G  +H+ I    LE +V V N LI+ YA+CG L  AR +FD + + N
Sbjct: 259 ILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPN 318

Query: 14  EVTW 3
            V+W
Sbjct: 319 RVSW 322


>ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
           gi|300161744|gb|EFJ28358.1| hypothetical protein
           SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 36/101 (35%), Positives = 57/101 (56%)
 Frame = -3

Query: 305 HVARNNWSFEQRMEEALDVLDLMETQGMKLDPRLICILLKSCTQEQNLDFGKTIHSKIVG 126
           +V  N ++   R  EAL+    ++ + + +D      +L +CT   +L  GK IHS  V 
Sbjct: 533 NVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVE 592

Query: 125 TELETDVYVVNNLINFYAKCGCLKTARNLFDEMPNKNEVTW 3
             L++DV V N L N Y+KCG ++ AR +FD MP ++ V+W
Sbjct: 593 CGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSW 633



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 28/95 (29%), Positives = 44/95 (46%)
 Frame = -3

Query: 287 WSFEQRMEEALDVLDLMETQGMKLDPRLICILLKSCTQEQNLDFGKTIHSKIVGTELETD 108
           +S  +R  EA  +   M+ +G + D      +L +C   + L  GK +   I  T  E D
Sbjct: 236 YSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELD 295

Query: 107 VYVVNNLINFYAKCGCLKTARNLFDEMPNKNEVTW 3
           ++V   LI  YA+C   + A  +F  M   N +TW
Sbjct: 296 LFVGTALITMYARCRSPEDAAQVFGRMKQTNLITW 330



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 31/86 (36%), Positives = 45/86 (52%)
 Frame = -3

Query: 260 ALDVLDLMETQGMKLDPRLICILLKSCTQEQNLDFGKTIHSKIVGTELETDVYVVNNLIN 81
           A+++   M  +G+K +      +L S      L  GK IHS +  +E   DV+V   L+N
Sbjct: 144 AVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVN 203

Query: 80  FYAKCGCLKTARNLFDEMPNKNEVTW 3
            Y KCG L  AR +FD MP ++  TW
Sbjct: 204 TYTKCGSLTDARKVFDGMPCRSVGTW 229


>ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
           gi|300153737|gb|EFJ20374.1| hypothetical protein
           SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 36/101 (35%), Positives = 57/101 (56%)
 Frame = -3

Query: 305 HVARNNWSFEQRMEEALDVLDLMETQGMKLDPRLICILLKSCTQEQNLDFGKTIHSKIVG 126
           +V  N ++   R  EAL+    ++ + + +D      +L +CT   +L  GK IHS  V 
Sbjct: 284 NVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVE 343

Query: 125 TELETDVYVVNNLINFYAKCGCLKTARNLFDEMPNKNEVTW 3
             L++DV V N L N Y+KCG ++ AR +FD MP ++ V+W
Sbjct: 344 CGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSW 384



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 30/95 (31%), Positives = 46/95 (48%)
 Frame = -3

Query: 287 WSFEQRMEEALDVLDLMETQGMKLDPRLICILLKSCTQEQNLDFGKTIHSKIVGTELETD 108
           +S  +R  EA  +   M+ +G + D      +L +C   +NL  GK +   I  T  E D
Sbjct: 86  YSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGKHVRESISETSFELD 145

Query: 107 VYVVNNLINFYAKCGCLKTARNLFDEMPNKNEVTW 3
           ++V   LI  YA+C   + A  +F  M  KN +TW
Sbjct: 146 LFVGTALITMYARCRSPENAAQVFGRMKQKNLITW 180


>ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
 Frame = -3

Query: 272 RMEEALDVLDLMETQGMKLDPRLICILLKSCTQEQNLDFGKTIHSKIVGTELETDVYVVN 93
           R+  A   LDLM  Q    D     ILLKSC + +N   GK +H K++ + LE D  V+N
Sbjct: 6   RLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLN 65

Query: 92  NLINFYAKCGCLKTARNLFDEMPNKNE-VTW 3
            LI+ Y+KCG  +TAR +F+ M NK + V+W
Sbjct: 66  TLISLYSKCGDTETARLIFEGMGNKRDLVSW 96



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
 Frame = -3

Query: 263 EALDVLDLMETQGMKLDPRLICILLKSCTQEQNLDFGKTIHSKIVGTELETDVYVVNNLI 84
           +A+D+   ME  G   D      +L +CT+   L  GK +HS+++   L  DV V  +L+
Sbjct: 214 DAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLV 273

Query: 83  NFYAKC---GCLKTARNLFDEMPNKNEVTW 3
           + YAKC   G +  +R +F++MP  N ++W
Sbjct: 274 DMYAKCAADGSVDDSRKVFEQMPEHNVMSW 303