BLASTX nr result
ID: Coptis24_contig00025848
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00025848
(761 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003622277.1| F-box/FBD/LRR-repeat protein [Medicago trunc... 56 3e-14
ref|NP_200453.1| F-box/FBD/LRR-repeat protein [Arabidopsis thali... 60 5e-12
ref|XP_002888725.1| F-box family protein [Arabidopsis lyrata sub... 55 1e-10
ref|XP_002331320.1| f-box family protein [Populus trichocarpa] g... 48 1e-10
ref|XP_002331319.1| f-box family protein [Populus trichocarpa] g... 47 2e-10
>ref|XP_003622277.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
gi|355497292|gb|AES78495.1| F-box/FBD/LRR-repeat protein
[Medicago truncatula]
Length = 356
Score = 55.8 bits (133), Expect(2) = 3e-14
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Frame = +1
Query: 382 DIKTFITFAIRHNVQNIDISVLSGKLDNFLPRSLFTATCLFSLSFSNLKLTLPQNLQVKF 561
D+K FI + +QN+++ + KL LP +F+ + L +L L + + F
Sbjct: 101 DVKRFIHAIFQRGIQNLNLEMSPFKLGFKLPHCVFSCSNLTALKLKG--LAIDYSCDFNF 158
Query: 562 PSLKSLSLFTVSFRDDREA-VRIFRNCPSLEEL 657
P LK+L L+T+SF DR+ +R+ + CP LE+L
Sbjct: 159 PLLKTLHLYTISFGRDRDCFLRLLKGCPILEDL 191
Score = 48.5 bits (114), Expect(2) = 3e-14
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +2
Query: 35 DRVTALPLTIRNHILSFLPLKDQIRTTSLSTKWKIVPSYITHLDFNQLNFPNTVKSHLKD 214
DRV+ LP ++ HILSFLP K+ T+ LS +W + + LDF+ NF T S +
Sbjct: 11 DRVSVLPDSVICHILSFLPTKESAATSILSKRWNPLWLSVLTLDFDDQNF--TEFSTFRH 68
Query: 215 IVYQTLIQHN-TSSDIKLFKL 274
VY + N T I+ F+L
Sbjct: 69 FVYSVIALRNITLQTIQSFRL 89
>ref|NP_200453.1| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana]
gi|42573694|ref|NP_974943.1| F-box/FBD/LRR-repeat
protein [Arabidopsis thaliana]
gi|75262699|sp|Q9FM89.1|FDL38_ARATH RecName:
Full=F-box/FBD/LRR-repeat protein At5g56420
gi|10177841|dbj|BAB11270.1| unnamed protein product
[Arabidopsis thaliana] gi|332009379|gb|AED96762.1|
F-box/FBD/LRR-repeat protein [Arabidopsis thaliana]
gi|332009380|gb|AED96763.1| F-box/FBD/LRR-repeat protein
[Arabidopsis thaliana]
Length = 422
Score = 60.1 bits (144), Expect(2) = 5e-12
Identities = 37/117 (31%), Positives = 58/117 (49%)
Frame = +1
Query: 382 DIKTFITFAIRHNVQNIDISVLSGKLDNFLPRSLFTATCLFSLSFSNLKLTLPQNLQVKF 561
D+ ++ + V+ + +S SG+ LP+ LFT + L L N+ L + V F
Sbjct: 95 DVGVWVRIGVDRFVRELSVSYCSGEEPIRLPKCLFTCSTLAVLKLENITLE-DASCYVCF 153
Query: 562 PSLKSLSLFTVSFRDDREAVRIFRNCPSLEELTIVGCYFTTPHVLQFPGPNLRFLKL 732
SLK+L L V + DD+ RI +C SLE+L + C V+ P+L+ L L
Sbjct: 154 QSLKTLHLLDVKYLDDQSLPRIISSCSSLEDLVVQRCPGDNVKVVTVTAPSLKTLSL 210
Score = 37.0 bits (84), Expect(2) = 5e-12
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = +2
Query: 35 DRVTALPLTIRNHILSFLPLKDQIRTTSLSTKWKIVPSYITHLDFNQLNFPNTVKSHLKD 214
DR++ LP ILS+LP KD + T+ LS +W+ + + + L+++ NT
Sbjct: 6 DRLSQLPDDFLLQILSWLPTKDVLVTSLLSKRWRFLWTLVPRLNYDLRLHDNTC-PRFSQ 64
Query: 215 IVYQTLIQHNT----SSDIKLFKLTF 280
V ++L+ H S +IK+ + F
Sbjct: 65 FVDRSLLLHKAPTLESLNIKIGSICF 90
>ref|XP_002888725.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
gi|297334566|gb|EFH64984.1| F-box family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 428
Score = 54.7 bits (130), Expect(2) = 1e-10
Identities = 39/112 (34%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Frame = +1
Query: 385 IKTFITFAIRHNVQNIDISVLS-GKLDNFLPRSLFTATCLFSLSFSNLKLTLPQNLQVKF 561
I +I + NV++ID+ S G + LP S++T L SL LTLP V
Sbjct: 110 IGRWINTIVTRNVKHIDVLDDSYGSWEVQLPSSIYTCESLVSLKLC--ALTLPSPKFVSL 167
Query: 562 PSLKSLSLFTVSFRDDREAVRIFRNCPSLEELTIVGCYFTTPHVLQFPGPNL 717
PSLK ++L F DD + CP LE LTI C+ VL+ +L
Sbjct: 168 PSLKVMALLIAKFADDLALETLITKCPVLESLTIERCFCDEIEVLRVRSQSL 219
Score = 37.7 bits (86), Expect(2) = 1e-10
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Frame = +2
Query: 35 DRVTALPLTIRNHILSFLPLKDQIRTTSLSTKWKIVPSYITHLDFNQLNFP--NTVKSHL 208
D ++ LP + +L LP KD ++++ LST+W+ + ++ LD + +F NT + +
Sbjct: 18 DWISKLPDCLLCEVLLNLPTKDVVKSSVLSTRWRNLWKHVPGLDLDNSDFQEFNTFLNFV 77
Query: 209 KDIVYQTLIQHNTSSDIKLFKLTFHVDN 292
+ + NT S ++ F L + D+
Sbjct: 78 -----DSFLDFNTESCLQYFMLKYDCDD 100
>ref|XP_002331320.1| f-box family protein [Populus trichocarpa]
gi|222873903|gb|EEF11034.1| f-box family protein
[Populus trichocarpa]
Length = 453
Score = 47.8 bits (112), Expect(2) = 1e-10
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Frame = +2
Query: 35 DRVTALPLTIRNHILSFLPLKDQIRTTSLSTKWKIVPSYITHLDFNQLNFPNTVKS---- 202
DR++ LP + +HILSF+ ++T LS +W V +LDFN F + + S
Sbjct: 35 DRISTLPNVLLHHILSFVDAVQVVQTCVLSKRWMNVWKSHPYLDFNFETFSSLINSDYYD 94
Query: 203 ----HLKDIVYQTLIQHNTSSDIKLFKLT 277
+ D +Y L++ N ++K FKL+
Sbjct: 95 DDMNNFTDFIYHVLVRRN---NVKAFKLS 120
Score = 44.3 bits (103), Expect(2) = 1e-10
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Frame = +1
Query: 385 IKTFITFAIRHNVQNIDISVLSGKLDNFLPRSLFTATCLFSLSFS-NLKLTLPQNLQVKF 561
+++ I +A++H+V+ I I+ + LPR F L SL + L LP++L ++
Sbjct: 132 VESLIYYAVKHHVEEISINTAHWDVPIVLPRCFFDCESLRSLKLKVDGGLALPKSLGLQ- 190
Query: 562 PSLKSLSLFTVSFRDDREAVRIFRNCPSLEELTI 663
SLK+L L D +IF +CP+LE LTI
Sbjct: 191 -SLKTLHLGGAQNFDG----KIFSSCPNLENLTI 219
>ref|XP_002331319.1| f-box family protein [Populus trichocarpa]
gi|222873902|gb|EEF11033.1| f-box family protein
[Populus trichocarpa]
Length = 453
Score = 47.4 bits (111), Expect(2) = 2e-10
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Frame = +1
Query: 385 IKTFITFAIRHNVQNIDISVLSGKLDNFLPRSLFTATCLFSLSFS-NLKLTLPQNLQVKF 561
+++ I +A++H+V+ I ++ + LPR F L SL + + LP++L ++
Sbjct: 132 VESLIYYAVKHHVEEISVNTAHWDMPIVLPRCFFDCESLRSLKLKVDGGIALPKSLGLQ- 190
Query: 562 PSLKSLSLFTVSFRDDREAVRIFRNCPSLEELTIVGCYFTTPHVLQFPGPNLRFLKLL 735
SLK+L L D + IF CP+LE L I Y T NL+ L++L
Sbjct: 191 -SLKTLHLGGARNFDGK----IFSTCPNLENLKIEDIYLNTIENFNIHALNLKSLEIL 243
Score = 44.3 bits (103), Expect(2) = 2e-10
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Frame = +2
Query: 35 DRVTALPLTIRNHILSFLPLKDQIRTTSLSTKWKIVPSYITHLDFNQLNFPNTVKS---- 202
DR++ LP + +HILSF+ ++T LS +W V +LDFN F + + S
Sbjct: 35 DRISTLPNVLLHHILSFVDAVQVVQTCVLSKRWMNVWKSHPYLDFNFETFSSLINSDYYD 94
Query: 203 ----HLKDIVYQTLIQHNTSSDIKL 265
+ D +Y L++ + +K+
Sbjct: 95 DEVNNFTDFIYHVLVRRHNLKAVKI 119