BLASTX nr result
ID: Coptis24_contig00025828
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00025828
(841 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [S... 114 1e-45
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid... 102 9e-45
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 110 1e-43
gb|ABA98491.1| retrotransposon protein, putative, unclassified [... 107 6e-43
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo... 106 2e-42
>ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [Sorghum bicolor]
gi|241926916|gb|EES00061.1| hypothetical protein
SORBIDRAFT_03g001780 [Sorghum bicolor]
Length = 631
Score = 114 bits (286), Expect(3) = 1e-45
Identities = 61/139 (43%), Positives = 85/139 (61%)
Frame = -1
Query: 418 ILLNGSPLKKIFPFRGLRQGDMGAPMSPYLFIIASEALSRLFLQEESLGNIHGIKVKRGA 239
I +N S +KIFP RGLRQGD P+SPYLFII +E LS + + E G I GIK+ RGA
Sbjct: 198 IKVNDSYTQKIFPQRGLRQGD---PLSPYLFIICAEGLSAMLQKAEQKGKIEGIKICRGA 254
Query: 238 IPITHLLYADDLLIFCKATLEESKRMRQVIVKYCETSGQAVNWEKSSAYFSSNVHHDHQR 59
+ HL +ADD LI +A ++ +R+++ Y + SGQ +N EKSS FS N +
Sbjct: 255 PKVNHLFFADDSLILMRARASDALELRRILDVYEKASGQVINKEKSSMMFSPNTGQHDRS 314
Query: 58 FLKQHWNVKDFNENEKYLG 2
++ + ++ D EKYLG
Sbjct: 315 LMRSNLSITDEASTEKYLG 333
Score = 81.3 bits (199), Expect(3) = 1e-45
Identities = 38/92 (41%), Positives = 59/92 (64%)
Frame = -3
Query: 695 RLKPLLHKIISPHQAAFIKGRAIGDNTSMTNEIFHNXXXXXXXX*GWMAVKLDIAKAFDR 516
RLK +L IIS Q+AF+ GR I DN + EI H+ G A+KLD++KA+DR
Sbjct: 105 RLKKILPNIISNSQSAFVPGRLITDNVLLAYEIVHHLKSIKKGAGGLAAIKLDMSKAYDR 164
Query: 515 LEWCFIDQVLERLGFSSRSRILINQCISTVSY 420
+EW F++ ++ ++GF + LI +C++TV+Y
Sbjct: 165 VEWSFLENMMRKMGFDEKWVQLIMKCVTTVTY 196
Score = 35.0 bits (79), Expect(3) = 1e-45
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -2
Query: 831 GMLPLTLNETFITLIPKITNPEHMSKFRPISLSN 730
G +P N+T I LIPK P+ + RPISL N
Sbjct: 59 GPIPEGWNDTIIVLIPKTNTPQMLKDLRPISLCN 92
>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|7267666|emb|CAB78094.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
Length = 1274
Score = 102 bits (253), Expect(3) = 9e-45
Identities = 57/138 (41%), Positives = 80/138 (57%)
Frame = -1
Query: 415 LLNGSPLKKIFPFRGLRQGDMGAPMSPYLFIIASEALSRLFLQEESLGNIHGIKVKRGAI 236
L+NGSP + P RGLRQGD P+SPYLFI+ +E LS L + + G + GI+V RG+
Sbjct: 559 LINGSPQGSVVPSRGLRQGD---PLSPYLFILCTEVLSGLCRKAQEKGVMVGIRVARGSP 615
Query: 235 PITHLLYADDLLIFCKATLEESKRMRQVIVKYCETSGQAVNWEKSSAYFSSNVHHDHQRF 56
+ HLL+ADD + FCK + ++ KY SGQ++N KS+ FSS D +R
Sbjct: 616 QVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAITFSSKTPQDIKRR 675
Query: 55 LKQHWNVKDFNENEKYLG 2
+K + + KYLG
Sbjct: 676 VKLSLRIDNEGGIGKYLG 693
Score = 85.5 bits (210), Expect(3) = 9e-45
Identities = 42/93 (45%), Positives = 61/93 (65%)
Frame = -3
Query: 695 RLKPLLHKIISPHQAAFIKGRAIGDNTSMTNEIFHNXXXXXXXX*GWMAVKLDIAKAFDR 516
RL+P L ++IS HQ+AF+ GRAI DN +T+EI H MA+K D++KA+DR
Sbjct: 465 RLQPWLSELISLHQSAFVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDR 524
Query: 515 LEWCFIDQVLERLGFSSRSRILINQCISTVSYN 417
++W F+ +VL RLGF + + QC+ TVSY+
Sbjct: 525 IKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYS 557
Score = 40.4 bits (93), Expect(3) = 9e-45
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = -2
Query: 840 FIFGMLPLTLNETFITLIPKITNPEHMSKFRPISLSN 730
F+ L LNET +TLIPKI+ P +S +RPI+L N
Sbjct: 416 FVDSCLSPRLNETHVTLIPKISAPRKVSDYRPIALCN 452
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 110 bits (276), Expect(3) = 1e-43
Identities = 57/139 (41%), Positives = 85/139 (61%)
Frame = -1
Query: 418 ILLNGSPLKKIFPFRGLRQGDMGAPMSPYLFIIASEALSRLFLQEESLGNIHGIKVKRGA 239
+L+NG+P +I P RGLRQGD P+SPYLF+I +E L ++ E I G+KV RGA
Sbjct: 617 VLINGTPHGEIIPSRGLRQGD---PLSPYLFVICTEMLVKMLQSAEQKNQITGLKVARGA 673
Query: 238 IPITHLLYADDLLIFCKATLEESKRMRQVIVKYCETSGQAVNWEKSSAYFSSNVHHDHQR 59
PI+HLL+ADD + +CK E ++ ++I +Y SGQ VN+ KSS YF ++ + +
Sbjct: 674 PPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLKSSIYFGKHISEERRC 733
Query: 58 FLKQHWNVKDFNENEKYLG 2
+K+ ++ YLG
Sbjct: 734 LVKRKLGIEREGGEGVYLG 752
Score = 77.4 bits (189), Expect(3) = 1e-43
Identities = 37/92 (40%), Positives = 57/92 (61%)
Frame = -3
Query: 695 RLKPLLHKIISPHQAAFIKGRAIGDNTSMTNEIFHNXXXXXXXX*GWMAVKLDIAKAFDR 516
RLK +L +IS QAAF+KGR I DN + +E+ H ++A+K DI+KA+DR
Sbjct: 524 RLKKILPSLISETQAAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDR 583
Query: 515 LEWCFIDQVLERLGFSSRSRILINQCISTVSY 420
+EW F+++ + LGF+ LI +C+ +V Y
Sbjct: 584 VEWPFLEKAMRGLGFADHWIRLIMECVKSVRY 615
Score = 36.2 bits (82), Expect(3) = 1e-43
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = -2
Query: 840 FIFGMLPLTLNETFITLIPKITNPEHMSKFRPISLSN 730
F G + +N+T I LIPKI E M+ FRPISL N
Sbjct: 475 FRSGSIEEGMNKTNICLIPKILKAEKMTDFRPISLCN 511
>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1621
Score = 107 bits (268), Expect(3) = 6e-43
Identities = 56/139 (40%), Positives = 86/139 (61%)
Frame = -1
Query: 418 ILLNGSPLKKIFPFRGLRQGDMGAPMSPYLFIIASEALSRLFLQEESLGNIHGIKVKRGA 239
I +NG + P RGLRQGD P+SPYLF++ +E S L + E G +HGI++ +GA
Sbjct: 873 IRVNGELSESFSPGRGLRQGD---PLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGA 929
Query: 238 IPITHLLYADDLLIFCKATLEESKRMRQVIVKYCETSGQAVNWEKSSAYFSSNVHHDHQR 59
++HLL+ADD LI C+A E+++++ ++ Y E SGQ +N +KS+ FS N +R
Sbjct: 930 PSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKR 989
Query: 58 FLKQHWNVKDFNENEKYLG 2
+ N++ NE+YLG
Sbjct: 990 AVMAALNMQRETTNERYLG 1008
Score = 80.1 bits (196), Expect(3) = 6e-43
Identities = 39/92 (42%), Positives = 59/92 (64%)
Frame = -3
Query: 695 RLKPLLHKIISPHQAAFIKGRAIGDNTSMTNEIFHNXXXXXXXX*GWMAVKLDIAKAFDR 516
RLK +L +ISP Q+AF+ GR I DN + +E+ H G+ A KLD++KA+DR
Sbjct: 780 RLKKILPDVISPAQSAFVPGRLISDNILIADEMTHYMRNKRSGQVGYAAFKLDMSKAYDR 839
Query: 515 LEWCFIDQVLERLGFSSRSRILINQCISTVSY 420
+EW F+ ++ +LGF + LI +C+STV+Y
Sbjct: 840 VEWSFLHDMILKLGFHTDWVNLIMKCVSTVTY 871
Score = 33.9 bits (76), Expect(3) = 6e-43
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -2
Query: 831 GMLPLTLNETFITLIPKITNPEHMSKFRPISLSN 730
G +P N+ I LIPK+ PE + RPISL N
Sbjct: 734 GAIPEGWNDITIVLIPKVKKPELIKDLRPISLCN 767
>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
Length = 1594
Score = 106 bits (264), Expect(3) = 2e-42
Identities = 56/139 (40%), Positives = 85/139 (61%)
Frame = -1
Query: 418 ILLNGSPLKKIFPFRGLRQGDMGAPMSPYLFIIASEALSRLFLQEESLGNIHGIKVKRGA 239
I +NG + P RGLRQGD P+SPYLF++ +E S L + E G +HGI++ +GA
Sbjct: 846 IRVNGELSESFSPERGLRQGD---PLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGA 902
Query: 238 IPITHLLYADDLLIFCKATLEESKRMRQVIVKYCETSGQAVNWEKSSAYFSSNVHHDHQR 59
++HLL+ADD LI C+A E+++++ ++ Y E SGQ +N +KS+ FS N +
Sbjct: 903 PSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKG 962
Query: 58 FLKQHWNVKDFNENEKYLG 2
+ N++ NEKYLG
Sbjct: 963 AVMAALNMQRETTNEKYLG 981
Score = 80.1 bits (196), Expect(3) = 2e-42
Identities = 39/92 (42%), Positives = 59/92 (64%)
Frame = -3
Query: 695 RLKPLLHKIISPHQAAFIKGRAIGDNTSMTNEIFHNXXXXXXXX*GWMAVKLDIAKAFDR 516
RLK +L +ISP Q+AF+ GR I DN + +E+ H G+ A KLD++KA+DR
Sbjct: 753 RLKKILPDVISPAQSAFVPGRLISDNILIADEMTHYMRNKRSGQVGYAAFKLDMSKAYDR 812
Query: 515 LEWCFIDQVLERLGFSSRSRILINQCISTVSY 420
+EW F+ ++ +LGF + LI +C+STV+Y
Sbjct: 813 VEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTY 844
Score = 33.9 bits (76), Expect(3) = 2e-42
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -2
Query: 831 GMLPLTLNETFITLIPKITNPEHMSKFRPISLSN 730
G +P N+ I LIPK+ PE + RPISL N
Sbjct: 707 GAIPEGWNDITIVLIPKVKKPELIKDLRPISLCN 740