BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025472
         (408 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002880150.1| hypothetical protein ARALYDRAFT_483630 [Arab...    71   1e-10
ref|NP_850429.1| structural constituent of nuclear pore [Arabido...    65   4e-09
ref|XP_003565591.1| PREDICTED: uncharacterized protein LOC100833...    61   8e-08
ref|XP_003883549.1| conserved hypothetical protein [Neospora can...    60   2e-07
dbj|BAK04672.1| predicted protein [Hordeum vulgare subsp. vulgare]     59   4e-07

>ref|XP_002880150.1| hypothetical protein ARALYDRAFT_483630 [Arabidopsis lyrata subsp.
           lyrata] gi|297325989|gb|EFH56409.1| hypothetical protein
           ARALYDRAFT_483630 [Arabidopsis lyrata subsp. lyrata]
          Length = 737

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 40/121 (33%), Positives = 64/121 (52%)
 Frame = +1

Query: 13  FGSTIASDPTTSGAQSYPFSASGTLSLNFGQSTSASASTPFGTTPATSGSQSSPFIGSGT 192
           FGST++S P +S   S+ F AS + S  FG S S++ S  FG++ +T+ + ++P  G GT
Sbjct: 52  FGSTVSSTPASSTTPSFGFGASSSPSFGFGSSASSTPSFGFGSSASTTPASTTPSFGFGT 111

Query: 193 LCLSFGSTTASVGNSLFGVAPAASGAQTSPFGASGTLSLSFGQSIPAQTSPNSASRPSTS 372
              S  S  +  G+S    + AA G+    F  S   S +   S P     +S++ PS+S
Sbjct: 112 AASSSASAPSLFGSSTTNASSAAPGSSPFGFVTSSASSATVSASSPFGVPASSSATPSSS 171

Query: 373 V 375
           +
Sbjct: 172 I 172



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 9/144 (6%)
 Frame = +1

Query: 4   SLSFGSTIASDPTTSGAQSYPFSASGTLSLNFGQSTSASASTPFG------TTPATSGSQ 165
           S SFGS+ A++ +++ + + P      LS +F QS++ S ST FG      +TPA+S + 
Sbjct: 14  SFSFGSSSATNSSSASSTTSP------LSFSFNQSSNPS-STGFGFGSTVSSTPASSTTP 66

Query: 166 SSPFIGSGTLCLSFGSTTASVGNSLFGVAPAASGAQTSP---FGASGTLSLSFGQSIPAQ 336
           S  F  S +    FGS+ +S  +  FG + + + A T+P   FG + + S S      + 
Sbjct: 67  SFGFGASSSPSFGFGSSASSTPSFGFGSSASTTPASTTPSFGFGTAASSSASAPSLFGSS 126

Query: 337 TSPNSASRPSTSVGNILTSRAENS 408
           T+  S++ P +S    +TS A ++
Sbjct: 127 TTNASSAAPGSSPFGFVTSSASSA 150


>ref|NP_850429.1| structural constituent of nuclear pore [Arabidopsis thaliana]
           gi|22136928|gb|AAM91808.1| unknown protein [Arabidopsis
           thaliana] gi|330255401|gb|AEC10495.1| structural
           constituent of nuclear pore [Arabidopsis thaliana]
          Length = 739

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 60/168 (35%), Positives = 85/168 (50%), Gaps = 36/168 (21%)
 Frame = +1

Query: 13  FGSTIASDPTTSGAQSYPFSASGTLSLNFGQSTSAS----------ASTPFGTTPA---- 150
           FGS+++S P +S   S+ F AS T S  FG S S+S          + TP  TTP+    
Sbjct: 52  FGSSVSSTPASSTTPSFGFGASSTPSFGFGSSASSSTPSFGFGSSASVTPASTTPSFGFG 111

Query: 151 TSGSQSSP---FIGSGT--------------LCLSFGSTTASVGNSLFGVAPAASGA--Q 273
           T+ S S+P     GS T                 S  S+TA+  +SLFG APA+S A   
Sbjct: 112 TAASSSAPAPSLFGSSTTNASSAAPGSSPFGFVTSSASSTATPSSSLFG-APASSAATPS 170

Query: 274 TSPFG---ASGTLSLSFGQSIPAQTSPNSASRPSTSVGNILTSRAENS 408
           +SPFG   ASG+  L FG S    ++P+SAS  ++S+    +S A ++
Sbjct: 171 SSPFGAAPASGSTPL-FGSSPSLFSAPSSASASNSSLFGASSSAATST 217


>ref|XP_003565591.1| PREDICTED: uncharacterized protein LOC100833671 [Brachypodium
           distachyon]
          Length = 818

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 45/125 (36%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
 Frame = +1

Query: 10  SFGSTIASDPTTSGAQSYPFSASGTLSLNFGQSTSASASTPFGTTPATS-GSQSSPFIGS 186
           +FGST  S     GA S P   S     N   S  +S++T FG + A + G+ ++P  G+
Sbjct: 94  AFGSTSTS---LFGASSTPAFGSTPFGSNTTPSFGSSSTTAFGVSSAPAFGASTTPSFGT 150

Query: 187 GTLCLSFGSTTA------SVGNSLFGVAPAASGAQTSPFGASGTLSLSFGQSIPAQTSPN 348
            T   SFGS+ A      + G++ FG  P+  GAQTSPFG   T + +FGQ      S  
Sbjct: 151 STSAFSFGSSPAFGQTAPATGSTPFGTNPSPFGAQTSPFGVQ-TAAPAFGQGPHGNQSGG 209

Query: 349 SASRP 363
           S  +P
Sbjct: 210 SRIQP 214


>ref|XP_003883549.1| conserved hypothetical protein [Neospora caninum Liverpool]
           gi|325117966|emb|CBZ53517.1| conserved hypothetical
           protein [Neospora caninum Liverpool]
          Length = 2893

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 42/141 (29%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
 Frame = +1

Query: 4   SLSFGSTIASDPTTSGAQSYPFSASGTLSLNFGQSTSASASTPFGTTPATSGSQSSPFIG 183
           S S  S  +S P++S + S P S+S + S +   S+S+ +S+   ++P++S S SSP   
Sbjct: 8   SPSSSSPSSSSPSSSSSSSSPSSSSSSSSPSSSSSSSSPSSSSSSSSPSSSSSSSSPSSS 67

Query: 184 SGTLCLSFGSTTASVGNSLFGVAPAASGAQTSPFGASGTLSLS------FGQSIPAQTSP 345
           S +   S  S+++S  +S    +P++S + +SP  +S + SLS         S P+ +S 
Sbjct: 68  SSSSSPSSSSSSSSPSSSSSSSSPSSSSSSSSPSSSSSSSSLSSSSSSFSSSSSPSSSSF 127

Query: 346 NSASRPSTSVGNILTSRAENS 408
           +S+  PS+S  +   S + +S
Sbjct: 128 SSSPYPSSSSSSSSPSSSSSS 148


>dbj|BAK04672.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 908

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 45/95 (47%), Positives = 53/95 (55%), Gaps = 14/95 (14%)
 Frame = +1

Query: 4   SLSFGSTI-----ASDPTTSGAQSYP-FSASGT--------LSLNFGQSTSASASTPFGT 141
           S  FGST      +S  TT GA S P F AS T         S +FGQ+ SA+ STPFGT
Sbjct: 214 STPFGSTTTPGFGSSGTTTFGASSAPAFGASSTPANAFSFGSSPSFGQTASATGSTPFGT 273

Query: 142 TPATSGSQSSPFIGSGTLCLSFGSTTASVGNSLFG 246
           TP+  G+Q+SPF GS T   +FG   AS GN   G
Sbjct: 274 TPSPFGAQTSPF-GSQTAAPAFGQ--ASFGNQSGG 305



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 47/136 (34%), Positives = 66/136 (48%), Gaps = 18/136 (13%)
 Frame = +1

Query: 10  SFGSTIASDPTTSGAQSYPFSASGTLSLNFGQSTSASASTPFG--TTPA-------TSGS 162
           +FG+T      + GA + P   S + SL    ST    STPFG  TTP        T G+
Sbjct: 179 AFGTTTTP---SFGATTTPAFGSTSTSLFGASSTPTFGSTPFGSTTTPGFGSSGTTTFGA 235

Query: 163 QSSPFIGSGTLCL---------SFGSTTASVGNSLFGVAPAASGAQTSPFGASGTLSLSF 315
            S+P  G+ +            SFG T ++ G++ FG  P+  GAQTSPFG S T + +F
Sbjct: 236 SSAPAFGASSTPANAFSFGSSPSFGQTASATGSTPFGTTPSPFGAQTSPFG-SQTAAPAF 294

Query: 316 GQSIPAQTSPNSASRP 363
           GQ+     S  +  +P
Sbjct: 295 GQASFGNQSGGTRVQP 310