BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025458
         (357 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    96   2e-18
ref|XP_002320971.1| predicted protein [Populus trichocarpa] gi|2...    84   9e-15
ref|XP_004146883.1| PREDICTED: pentatricopeptide repeat-containi...    79   4e-13
ref|XP_002515265.1| pentatricopeptide repeat-containing protein,...    79   5e-13
ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containi...    73   3e-11

>ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02370, mitochondrial-like [Vitis vinifera]
          Length = 506

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 45/74 (60%), Positives = 59/74 (79%)
 Frame = -3

Query: 349 KKNEWKPTPERVMAFLKHCEKQKNVTDAEEFCKMLKNVDCLDSNAYCLLLSTYIAANKKE 170
           K NEW+P PERV+AFLK+ E++K+V  AE+FCK+LKN+  LDSNAY LLL T +AA + E
Sbjct: 421 KNNEWQPAPERVLAFLKYFEEEKDVEGAEKFCKILKNISGLDSNAYQLLLQTXVAAGRTE 480

Query: 169 PGMRKRLEMDCIKV 128
           P MRKR++ D I+V
Sbjct: 481 PEMRKRMKEDDIEV 494


>ref|XP_002320971.1| predicted protein [Populus trichocarpa] gi|222861744|gb|EEE99286.1|
           predicted protein [Populus trichocarpa]
          Length = 473

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 43/86 (50%), Positives = 57/86 (66%)
 Frame = -3

Query: 349 KKNEWKPTPERVMAFLKHCEKQKNVTDAEEFCKMLKNVDCLDSNAYCLLLSTYIAANKKE 170
           K+ EW+P P+ V AF  + E +K+V  AE  CK+LK+++ LDSNAY LLL TYIAA K  
Sbjct: 387 KEIEWQPEPKTVSAFFAYFEDEKDVNGAERLCKILKHINRLDSNAYDLLLKTYIAAGKLA 446

Query: 169 PGMRKRLEMDCIKVTXXXXXXXEKVC 92
           P MR+RLE D I++        E+VC
Sbjct: 447 PEMRQRLEEDGIEINPELENLLERVC 472


>ref|XP_004146883.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
           mitochondrial-like [Cucumis sativus]
           gi|449518825|ref|XP_004166436.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g02370,
           mitochondrial-like [Cucumis sativus]
          Length = 474

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 38/90 (42%), Positives = 56/90 (62%)
 Frame = -3

Query: 355 KKKKNEWKPTPERVMAFLKHCEKQKNVTDAEEFCKMLKNVDCLDSNAYCLLLSTYIAANK 176
           + K+ EW P+     AFL + E++K+V  AE+F ++LK + CLD++ Y LLL TY+AA K
Sbjct: 385 ESKEKEWHPSLATTTAFLNYFEEEKDVEGAEDFARILKRLKCLDASGYHLLLKTYVAAGK 444

Query: 175 KEPGMRKRLEMDCIKVTXXXXXXXEKVCMQ 86
             P MRKRL+ D I+++         VC Q
Sbjct: 445 LAPDMRKRLKEDDIEISSELEELLGTVCPQ 474


>ref|XP_002515265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545745|gb|EEF47249.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 504

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 39/88 (44%), Positives = 57/88 (64%)
 Frame = -3

Query: 355 KKKKNEWKPTPERVMAFLKHCEKQKNVTDAEEFCKMLKNVDCLDSNAYCLLLSTYIAANK 176
           + +K+EWKP  E V A+  +   +K+V  AE+  K+LK+++CL+S+ Y LLL TYIAA K
Sbjct: 415 ESEKHEWKPLQETVNAYFDYFRTEKDVDGAEKLSKILKHINCLNSSVYSLLLKTYIAAGK 474

Query: 175 KEPGMRKRLEMDCIKVTXXXXXXXEKVC 92
             P MR+RLE D I+++       E VC
Sbjct: 475 LAPEMRQRLEEDNIEISDELEYLLESVC 502


>ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
           mitochondrial [Vitis vinifera]
           gi|296089781|emb|CBI39600.3| unnamed protein product
           [Vitis vinifera]
          Length = 498

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 35/86 (40%), Positives = 55/86 (63%)
 Frame = -3

Query: 349 KKNEWKPTPERVMAFLKHCEKQKNVTDAEEFCKMLKNVDCLDSNAYCLLLSTYIAANKKE 170
           + N+W PT E +  FL++ E+ K+V  AE+FC+ ++ +  LDS  Y  LL TYIAA K+E
Sbjct: 411 ENNKWFPTEETITMFLEYFEEVKDVDSAEKFCETMRKISRLDSKIYDSLLRTYIAAGKEE 470

Query: 169 PGMRKRLEMDCIKVTXXXXXXXEKVC 92
           P M +R++ D I+++       +KVC
Sbjct: 471 PLMSERMKDDGIEISSETEKLLQKVC 496