BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025384
         (210 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003577164.1| PREDICTED: DNA-directed RNA polymerase E sub...    54   9e-09
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...    53   2e-08
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin...    53   2e-08
gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japo...    53   3e-08
gb|EEC72510.1| hypothetical protein OsI_05888 [Oryza sativa Indi...    53   3e-08

>ref|XP_003577164.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like
           [Brachypodium distachyon]
          Length = 1935

 Score = 54.3 bits (129), Expect(2) = 9e-09
 Identities = 26/36 (72%), Positives = 30/36 (83%)
 Frame = -1

Query: 153 FFMVLNPYEDLVHSIFSREPLVRSSRGLTGSGTLFK 46
           +F  LNPYE+LVHSI +RE +VRSSRGLT  GTLFK
Sbjct: 733 YFHGLNPYEELVHSISTREAIVRSSRGLTEPGTLFK 768



 Score = 30.0 bits (66), Expect(2) = 9e-09
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 53  YSN*MTVLRDVVLCYDG 3
           + N M +LRDVV+CYDG
Sbjct: 767 FKNLMAILRDVVICYDG 783


>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score = 52.8 bits (125), Expect(2) = 2e-08
 Identities = 24/37 (64%), Positives = 30/37 (81%)
 Frame = -1

Query: 156 CFFMVLNPYEDLVHSIFSREPLVRSSRGLTGSGTLFK 46
           CFF  L+PYE++VHSI +RE +VRSS+GL   GTLFK
Sbjct: 548 CFFHGLDPYEEIVHSIATREVIVRSSKGLAEPGTLFK 584



 Score = 30.4 bits (67), Expect(2) = 2e-08
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -2

Query: 53  YSN*MTVLRDVVLCYDG 3
           + N M VLRDVV+CYDG
Sbjct: 583 FKNLMAVLRDVVICYDG 599


>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 991

 Score = 53.1 bits (126), Expect(2) = 2e-08
 Identities = 24/37 (64%), Positives = 31/37 (83%)
 Frame = -1

Query: 156 CFFMVLNPYEDLVHSIFSREPLVRSSRGLTGSGTLFK 46
           CFF  L+PYE++VHSI +RE +VRS+RGL+  GTLFK
Sbjct: 750 CFFHGLDPYEEMVHSISAREVMVRSTRGLSEPGTLFK 786



 Score = 30.0 bits (66), Expect(2) = 2e-08
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 53  YSN*MTVLRDVVLCYDG 3
           + N M +LRDVV+CYDG
Sbjct: 785 FKNLMAILRDVVICYDG 801


>gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japonica Group]
          Length = 2017

 Score = 53.1 bits (126), Expect(2) = 3e-08
 Identities = 25/36 (69%), Positives = 30/36 (83%)
 Frame = -1

Query: 153 FFMVLNPYEDLVHSIFSREPLVRSSRGLTGSGTLFK 46
           +F  LNPYE+LVH+I +RE +VRSSRGLT  GTLFK
Sbjct: 752 YFHGLNPYEELVHAISTREAIVRSSRGLTEPGTLFK 787



 Score = 29.3 bits (64), Expect(2) = 3e-08
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 53  YSN*MTVLRDVVLCYDG 3
           + N M +LRDVV+CYDG
Sbjct: 786 FKNLMALLRDVVICYDG 802


>gb|EEC72510.1| hypothetical protein OsI_05888 [Oryza sativa Indica Group]
          Length = 1867

 Score = 53.1 bits (126), Expect(2) = 3e-08
 Identities = 25/36 (69%), Positives = 30/36 (83%)
 Frame = -1

Query: 153 FFMVLNPYEDLVHSIFSREPLVRSSRGLTGSGTLFK 46
           +F  LNPYE+LVH+I +RE +VRSSRGLT  GTLFK
Sbjct: 752 YFHGLNPYEELVHAISTREAIVRSSRGLTEPGTLFK 787



 Score = 29.3 bits (64), Expect(2) = 3e-08
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 53  YSN*MTVLRDVVLCYDG 3
           + N M +LRDVV+CYDG
Sbjct: 786 FKNLMALLRDVVICYDG 802