BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025235
         (290 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270543.2| PREDICTED: CCR4-NOT transcription complex su...    79   3e-13
emb|CBI24630.3| unnamed protein product [Vitis vinifera]               79   3e-13
ref|XP_004155261.1| PREDICTED: CCR4-NOT transcription complex su...    57   2e-06
ref|XP_004134286.1| PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT tra...    57   2e-06
ref|XP_003626683.1| CCR4-NOT transcription complex subunit [Medi...    56   3e-06

>ref|XP_002270543.2| PREDICTED: CCR4-NOT transcription complex subunit 1-like [Vitis
           vinifera]
          Length = 1586

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 38/76 (50%), Positives = 52/76 (68%), Gaps = 4/76 (5%)
 Frame = -2

Query: 217 FFSVVGKHIRYLIHDLNDSNYDS----LIHDFFQIADYGSKGSILLLQTFLDHLYFHGGD 50
           F S++   IR+L+H LNDSN+DS    ++ +  Q  +YG + SILLLQT LDH+ FHGGD
Sbjct: 178 FSSLISSQIRFLLHGLNDSNFDSNFDSVVRELCQFIEYGYEASILLLQTCLDHMNFHGGD 237

Query: 49  VQNKELKLDCLCTIFR 2
           + + +LK D L  IFR
Sbjct: 238 MNDMQLKPDVLAAIFR 253


>emb|CBI24630.3| unnamed protein product [Vitis vinifera]
          Length = 1496

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 38/76 (50%), Positives = 52/76 (68%), Gaps = 4/76 (5%)
 Frame = -2

Query: 217 FFSVVGKHIRYLIHDLNDSNYDS----LIHDFFQIADYGSKGSILLLQTFLDHLYFHGGD 50
           F S++   IR+L+H LNDSN+DS    ++ +  Q  +YG + SILLLQT LDH+ FHGGD
Sbjct: 5   FSSLISSQIRFLLHGLNDSNFDSNFDSVVRELCQFIEYGYEASILLLQTCLDHMNFHGGD 64

Query: 49  VQNKELKLDCLCTIFR 2
           + + +LK D L  IFR
Sbjct: 65  MNDMQLKPDVLAAIFR 80


>ref|XP_004155261.1| PREDICTED: CCR4-NOT transcription complex subunit 1-like [Cucumis
           sativus]
          Length = 962

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 26/67 (38%), Positives = 41/67 (61%)
 Frame = -2

Query: 226 MIPFFSVVGKHIRYLIHDLNDSNYDSLIHDFFQIADYGSKGSILLLQTFLDHLYFHGGDV 47
           M+ F +     IR+L+H L +SN +S++ +  +  D G +GS +LL+T LDH   HG D+
Sbjct: 1   MLMFSTATSSQIRFLLHSLTESNAESVLKELSEFIDCGIEGSFILLRTCLDHFTSHGTDL 60

Query: 46  QNKELKL 26
           +N  L L
Sbjct: 61  ENPLLLL 67


>ref|XP_004134286.1| PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT transcription complex
           subunit 1-like [Cucumis sativus]
          Length = 2427

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 26/67 (38%), Positives = 41/67 (61%)
 Frame = -2

Query: 226 MIPFFSVVGKHIRYLIHDLNDSNYDSLIHDFFQIADYGSKGSILLLQTFLDHLYFHGGDV 47
           M+ F +     IR+L+H L +SN +S++ +  +  D G +GS +LL+T LDH   HG D+
Sbjct: 1   MLMFSTATSSQIRFLLHSLTESNAESVLKELSEFIDCGIEGSFILLRTCLDHFTSHGTDL 60

Query: 46  QNKELKL 26
           +N  L L
Sbjct: 61  ENPLLLL 67


>ref|XP_003626683.1| CCR4-NOT transcription complex subunit [Medicago truncatula]
           gi|355520705|gb|AET01159.1| CCR4-NOT transcription
           complex subunit [Medicago truncatula]
          Length = 2410

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 25/64 (39%), Positives = 39/64 (60%)
 Frame = -2

Query: 226 MIPFFSVVGKHIRYLIHDLNDSNYDSLIHDFFQIADYGSKGSILLLQTFLDHLYFHGGDV 47
           M  F S     IR+L++ LN  N+DS++    Q  ++G+ G ILLLQT LDH  + G D+
Sbjct: 1   MATFSSTASNQIRFLLNSLNQLNFDSVLQQLSQFTEFGTVGCILLLQTCLDHFSYVGRDI 60

Query: 46  QNKE 35
           ++ +
Sbjct: 61  KDMQ 64