BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025232
         (231 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containi...   128   4e-28
ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   115   4e-24
ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containi...   115   4e-24
ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containi...   115   4e-24
ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago t...   109   2e-22

>ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 536

 Score =  128 bits (322), Expect = 4e-28
 Identities = 59/75 (78%), Positives = 66/75 (88%)
 Frame = -1

Query: 225 LFDEMPVRSAVSWTVMISGYAKKGDVETSCLYFDNAPVKDRGIWGSMISGYVQNNCFKEG 46
           +FDEMP  +AVSWTVMISGYAK GDVET+ + FD AP+KDRGIWGS+ISGYVQNNCFKEG
Sbjct: 162 IFDEMPWHTAVSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEG 221

Query: 45  LEMFRLMQVAGFEPD 1
           L+MFRLMQ  G EPD
Sbjct: 222 LQMFRLMQSTGLEPD 236


>ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20540-like [Cucumis sativus]
          Length = 532

 Score =  115 bits (288), Expect = 4e-24
 Identities = 55/77 (71%), Positives = 62/77 (80%)
 Frame = -1

Query: 231 KKLFDEMPVRSAVSWTVMISGYAKKGDVETSCLYFDNAPVKDRGIWGSMISGYVQNNCFK 52
           +++FDEMP  SAVSWTVMI GYA  GDV+T+   FD A VKD GIWG+MISGYVQNNCFK
Sbjct: 160 RQVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFK 219

Query: 51  EGLEMFRLMQVAGFEPD 1
           EGL MFRLMQ+   EPD
Sbjct: 220 EGLHMFRLMQLTEVEPD 236


>ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Cucumis sativus]
          Length = 532

 Score =  115 bits (288), Expect = 4e-24
 Identities = 55/77 (71%), Positives = 62/77 (80%)
 Frame = -1

Query: 231 KKLFDEMPVRSAVSWTVMISGYAKKGDVETSCLYFDNAPVKDRGIWGSMISGYVQNNCFK 52
           +++FDEMP  SAVSWTVMI GYA  GDV+T+   FD A VKD GIWG+MISGYVQNNCFK
Sbjct: 160 RQVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFK 219

Query: 51  EGLEMFRLMQVAGFEPD 1
           EGL MFRLMQ+   EPD
Sbjct: 220 EGLHMFRLMQLTEVEPD 236


>ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 518

 Score =  115 bits (288), Expect = 4e-24
 Identities = 53/77 (68%), Positives = 65/77 (84%)
 Frame = -1

Query: 231 KKLFDEMPVRSAVSWTVMISGYAKKGDVETSCLYFDNAPVKDRGIWGSMISGYVQNNCFK 52
           + +FDEMP  SAVSW+VMISGYAK GDV+++ L+FD AP KDRGIWG+MISGYVQN+CFK
Sbjct: 160 RHVFDEMPRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFK 219

Query: 51  EGLEMFRLMQVAGFEPD 1
           EGL +FRL+Q+    PD
Sbjct: 220 EGLYLFRLLQLTHVVPD 236


>ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355515352|gb|AES96975.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 525

 Score =  109 bits (273), Expect = 2e-22
 Identities = 49/75 (65%), Positives = 62/75 (82%)
 Frame = -1

Query: 225 LFDEMPVRSAVSWTVMISGYAKKGDVETSCLYFDNAPVKDRGIWGSMISGYVQNNCFKEG 46
           +FDE+P  + VSW+VMISGYAK GDV+++ L+FD AP KD+GIWG+MISGYVQN+CFKE 
Sbjct: 164 VFDEIPSLNVVSWSVMISGYAKVGDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKES 223

Query: 45  LEMFRLMQVAGFEPD 1
           L +FRLMQ+    PD
Sbjct: 224 LYLFRLMQLTDIVPD 238