BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00025221
         (416 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]                  53   5e-17
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...    57   8e-17
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]        57   2e-16
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]                  54   8e-16
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...    55   2e-15

>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
          Length = 1518

 Score = 53.1 bits (126), Expect(4) = 5e-17
 Identities = 24/43 (55%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
 Frame = -2

Query: 349 CNLIIEGGSSENIVSKEMDDKLQLPTEKHPSPYSIGWI-KDVG 224
           CNLII GGS  N+ S  M  KL LPT++HP+PY + W+ KD G
Sbjct: 411 CNLIINGGSCTNVASTTMVSKLGLPTQEHPNPYKLRWLSKDSG 453



 Score = 49.3 bits (116), Expect(4) = 5e-17
 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 7/49 (14%)
 Frame = -1

Query: 149 LLGRPWQYDVDSTHWGKDNTFTFSKNGVRVVLAPM-------GNPVVSE 24
           LLGRPW+YD ++TH GKDN + F   G +V L P+       G+P V E
Sbjct: 488 LLGRPWEYDRNTTHQGKDNVYIFKHQGKKVTLTPLPPNQRDYGSPNVPE 536



 Score = 25.4 bits (54), Expect(4) = 5e-17
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 234 RMLVKQG*ILVDSRCKISFSIGSRW 160
           R L K   + VD +C ISFSIG  +
Sbjct: 446 RWLSKDSGVRVDKQCIISFSIGKMY 470



 Score = 23.5 bits (49), Expect(4) = 5e-17
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 392 RHNIFQTKCTVNGRV 348
           R  IF+++CTV GRV
Sbjct: 396 RSMIFRSRCTVQGRV 410


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
           gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1616

 Score = 56.6 bits (135), Expect(3) = 8e-17
 Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 5/56 (8%)
 Frame = -1

Query: 155 SSLLGRPWQYDVDSTHWGKDNTFTFSKNGVRVVLAPMGNPVV-----SEASKEKVQ 3
           S LLGRPWQ+D DS H+GK N ++F  NG ++VL PM   V+     + ASK+K Q
Sbjct: 575 SMLLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDELARASKQKNQ 630



 Score = 50.4 bits (119), Expect(3) = 8e-17
 Identities = 21/43 (48%), Positives = 28/43 (65%)
 Frame = -2

Query: 349 CNLIIEGGSSENIVSKEMDDKLQLPTEKHPSPYSIGWIKDVGE 221
           C +II+GGS  N+ S EM +KL L T+ HP PY I W+   G+
Sbjct: 502 CRVIIDGGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGK 544



 Score = 24.3 bits (51), Expect(3) = 8e-17
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 392 RHNIFQTKCTVNGR 351
           RH +FQTKC +  R
Sbjct: 487 RHTLFQTKCVIKER 500


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score = 56.6 bits (135), Expect(3) = 2e-16
 Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 5/56 (8%)
 Frame = -1

Query: 155 SSLLGRPWQYDVDSTHWGKDNTFTFSKNGVRVVLAPMGNPVV-----SEASKEKVQ 3
           S LLGRPWQ+D DS H+GK N ++F  NG ++VL PM   V+     + ASK+K Q
Sbjct: 575 SMLLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDELARASKQKNQ 630



 Score = 50.8 bits (120), Expect(3) = 2e-16
 Identities = 21/43 (48%), Positives = 29/43 (67%)
 Frame = -2

Query: 349 CNLIIEGGSSENIVSKEMDDKLQLPTEKHPSPYSIGWIKDVGE 221
           C++II+GGS  N+ S EM +KL L T+ HP PY I W+   G+
Sbjct: 502 CHVIIDGGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGK 544



 Score = 22.3 bits (46), Expect(3) = 2e-16
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 389 HNIFQTKCTVNGR 351
           H +FQTKC +  R
Sbjct: 488 HTLFQTKCVIKER 500


>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
          Length = 1475

 Score = 54.3 bits (129), Expect(3) = 8e-16
 Identities = 22/43 (51%), Positives = 29/43 (67%)
 Frame = -2

Query: 349 CNLIIEGGSSENIVSKEMDDKLQLPTEKHPSPYSIGWIKDVGE 221
           CNLII+GGS  N+ S  + +KL LPT+ HPSPY + W+    E
Sbjct: 400 CNLIIDGGSCTNVASSTLIEKLSLPTQDHPSPYKLRWLNKGAE 442



 Score = 49.3 bits (116), Expect(3) = 8e-16
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = -1

Query: 149 LLGRPWQYDVDSTHWGKDNTFTFSKNGVRVVLAPM 45
           LLGRPW++D DS H G+DNT+TF     +V+L P+
Sbjct: 476 LLGRPWEFDRDSVHHGRDNTYTFKFRSRKVILTPL 510



 Score = 24.3 bits (51), Expect(3) = 8e-16
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 392 RHNIFQTKCTVNGRV 348
           R  IF+++CT+ GRV
Sbjct: 385 RQQIFRSRCTIKGRV 399


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
           gi|15217296|gb|AAK92640.1|AC079634_1 Putative
           retroelement [Oryza sativa Japonica Group]
           gi|31431373|gb|AAP53161.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 1708

 Score = 54.7 bits (130), Expect(3) = 2e-15
 Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
 Frame = -1

Query: 155 SSLLGRPWQYDVDSTHWGKDNTFTFSKNGVRVVLAPMGNPVV-----SEASKEKVQ 3
           S  LGRPWQ+D DS H+GK N ++F  NG ++VL PM   V+     + ASK+K Q
Sbjct: 575 SIFLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDELARASKQKNQ 630



 Score = 47.4 bits (111), Expect(3) = 2e-15
 Identities = 20/43 (46%), Positives = 27/43 (62%)
 Frame = -2

Query: 349 CNLIIEGGSSENIVSKEMDDKLQLPTEKHPSPYSIGWIKDVGE 221
           C +II+ GS  N+ S EM +KL L T+ HP PY I W+   G+
Sbjct: 502 CRVIIDRGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGK 544



 Score = 24.3 bits (51), Expect(3) = 2e-15
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 392 RHNIFQTKCTVNGR 351
           RH +FQTKC +  R
Sbjct: 487 RHTLFQTKCVIKER 500