BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024533
         (347 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                106   2e-21
gb|AAG50898.1|AC068901_7 hypothetical protein [Arabidopsis thali...   103   1e-20
gb|AAK38382.1|AC079028_6 hypothetical protein [Arabidopsis thali...   103   1e-20
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...   102   3e-20
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             101   6e-20

>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score =  106 bits (265), Expect = 2e-21
 Identities = 54/110 (49%), Positives = 72/110 (65%)
 Frame = +2

Query: 8    PEGNGQAESSNKTIMNNLKRKLEDKKGAWADELNHVL*AYRTTPRLSTQETPFSLAYGVE 187
            P+GN QAE++NK I+  LK+ L+D KG W +EL HVL AYRTTPR ST ETPFS+ YG+E
Sbjct: 918  PQGNSQAEATNKVILAGLKKHLDDAKGRWVEELPHVLWAYRTTPRRSTGETPFSMTYGME 977

Query: 188  AVILYEMVAATT*TKAVEEGSNWRILAADLNLAEERRDIACIKLEEYHRR 337
            AVI  E+   T         +N  +L   LN  EERR++A +K+  Y ++
Sbjct: 978  AVIPLELGFPTLKFDQYNNVTNHDMLHDSLNTIEERREVASVKMGSYQQK 1027


>gb|AAG50898.1|AC068901_7 hypothetical protein [Arabidopsis thaliana]
          Length = 243

 Score =  103 bits (258), Expect = 1e-20
 Identities = 54/111 (48%), Positives = 77/111 (69%), Gaps = 2/111 (1%)
 Frame = +2

Query: 8   PEGNGQAESSNKTIMNNLKRKLEDKKGAWADELNHVL*AYRTTPRLSTQETPFSLAYGVE 187
           P+GNGQAE++NK I++N+K+ L+ KK  W+D L+ VL AYRTTPR STQETPFSLAYG+E
Sbjct: 93  PQGNGQAEAANKAILSNIKKILDSKKSMWSDVLHGVLWAYRTTPRKSTQETPFSLAYGLE 152

Query: 188 AVILYEMVAATT*TKAVEEGS--NWRILAADLNLAEERRDIACIKLEEYHR 334
           AVI    +  +    A    S  N ++L  +++  +ERRD A I+++ Y +
Sbjct: 153 AVIPIVTIIPSVRRTASHANSDMNTQMLRDNMDFIDERRDQAMIRVQNYQQ 203


>gb|AAK38382.1|AC079028_6 hypothetical protein [Arabidopsis thaliana]
          Length = 257

 Score =  103 bits (258), Expect = 1e-20
 Identities = 54/111 (48%), Positives = 77/111 (69%), Gaps = 2/111 (1%)
 Frame = +2

Query: 8   PEGNGQAESSNKTIMNNLKRKLEDKKGAWADELNHVL*AYRTTPRLSTQETPFSLAYGVE 187
           P+GNGQAE++NK I++N+K+ L+ KK  W+D L+ VL AYRTTPR STQETPFSLAYG+E
Sbjct: 107 PQGNGQAEAANKAILSNIKKILDSKKSMWSDVLHGVLWAYRTTPRKSTQETPFSLAYGLE 166

Query: 188 AVILYEMVAATT*TKAVEEGS--NWRILAADLNLAEERRDIACIKLEEYHR 334
           AVI    +  +    A    S  N ++L  +++  +ERRD A I+++ Y +
Sbjct: 167 AVIPIVTIIPSVRRTASHANSDMNTQMLRDNMDFIDERRDQAMIRVQNYQQ 217


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  102 bits (255), Expect = 3e-20
 Identities = 57/109 (52%), Positives = 75/109 (68%), Gaps = 2/109 (1%)
 Frame = +2

Query: 8    PEGNGQAESSNKTIMNNLKRKLEDKKGAWADELNHVL*AYRTTPRLSTQETPFSLAYGVE 187
            P+GNGQAE++NKTI++NLK++L   KG W DEL  VL AYRTTPR ST ETPFSL YG++
Sbjct: 1096 PQGNGQAEAANKTILSNLKKRLNHLKGGWYDELQPVLWAYRTTPRRSTGETPFSLVYGMK 1155

Query: 188  AVILYEM-VAATT*TKA-VEEGSNWRILAADLNLAEERRDIACIKLEEY 328
            AV+  E+ V     T+A + E  N  +L   L+   ERRD A I+++ Y
Sbjct: 1156 AVVPAELNVPGLRRTEAPLNEKENSAMLDDSLDTINERRDQALIQIQNY 1204


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  101 bits (252), Expect = 6e-20
 Identities = 56/111 (50%), Positives = 75/111 (67%), Gaps = 2/111 (1%)
 Frame = +2

Query: 8    PEGNGQAESSNKTIMNNLKRKLEDKKGAWADELNHVL*AYRTTPRLSTQETPFSLAYGVE 187
            P+GNGQAE++NKTI++NLK++L   KG W +EL  VL AYRTTPR  T ETPFSL YG+E
Sbjct: 913  PQGNGQAEAANKTILSNLKKRLNHLKGGWYEELQPVLWAYRTTPRRPTGETPFSLVYGME 972

Query: 188  AVILYEM-VAATT*TKA-VEEGSNWRILAADLNLAEERRDIACIKLEEYHR 334
            AV+  E+ V     T+A + E  N  +L   L+   ERRD A I+++ Y +
Sbjct: 973  AVVPAELNVPGLRRTEAPLNEEENSAMLNDSLDTINERRDQALIRIQNYQQ 1023