BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024515
         (518 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containi...   209   1e-52
ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containi...   184   5e-45
ref|XP_002524945.1| pentatricopeptide repeat-containing protein,...   172   3e-41
ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containi...   170   1e-40
emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]   162   3e-38

>ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  209 bits (533), Expect = 1e-52
 Identities = 99/146 (67%), Positives = 120/146 (82%)
 Frame = +2

Query: 80  KLAFHLDKSKSIHHILQIHAVILKNGLEEHPILNFKLQRSYSFHNRLDYSRTLFDAFDNP 259
           +LA  +DKSK+I H+LQIHAV+ ++GL+ HPILNFKLQRSY+   RLDYS  LF    NP
Sbjct: 32  RLAVLIDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNP 91

Query: 260 NVFFWTSLIHGHTLNGLYNDALSLYSQMLSYGVEPNHFTFSSVLKSCSLEPGKVIHSQIL 439
           +VFFWT++IHGH L GL+  AL+ Y+QML+ GVEPN FTFSS+LK C +EPGK +HSQ +
Sbjct: 92  SVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQAV 151

Query: 440 KLGFVSDVYVRTGLLDVYARGGDVVS 517
           KLGF SD+YVRTGLLDVYARGGDVVS
Sbjct: 152 KLGFDSDLYVRTGLLDVYARGGDVVS 177



 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 4/108 (3%)
 Frame = +2

Query: 200 YSFHNRLDYSRTLFDAFDNPNVFFWTSLIHGHTLNGLYNDALSLYSQMLSYGVEPNHFTF 379
           Y+ H  LD +R LFD  +  +   W  +I G+T NG+ N+AL L+ +ML    +PN  T 
Sbjct: 200 YAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTV 259

Query: 380 SSVLKSC----SLEPGKVIHSQILKLGFVSDVYVRTGLLDVYARGGDV 511
            SVL +C    +LE G+ +HS I   G   +V+V T L+D+Y++ G +
Sbjct: 260 LSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSL 307



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 28/90 (31%), Positives = 49/90 (54%)
 Frame = +2

Query: 131 IHAVILKNGLEEHPILNFKLQRSYSFHNRLDYSRTLFDAFDNPNVFFWTSLIHGHTLNGL 310
           +H+ I  NG++ +  +   L   YS    L+ +R +FD  D+ +V  W S+I G+ ++G 
Sbjct: 278 VHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGF 337

Query: 311 YNDALSLYSQMLSYGVEPNHFTFSSVLKSC 400
             +AL L+  M   G+ P + TF  +L +C
Sbjct: 338 SQEALQLFKSMCRMGLHPTNITFIGILSAC 367


>ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
           gi|449513125|ref|XP_004164238.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  184 bits (468), Expect = 5e-45
 Identities = 92/145 (63%), Positives = 113/145 (77%)
 Frame = +2

Query: 80  KLAFHLDKSKSIHHILQIHAVILKNGLEEHPILNFKLQRSYSFHNRLDYSRTLFDAFDNP 259
           + A  +DKSKS+ H+LQIHA +L+ GL  +PILNFKLQRSY+   RLD S  +F+ FD P
Sbjct: 49  RFASLIDKSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEP 108

Query: 260 NVFFWTSLIHGHTLNGLYNDALSLYSQMLSYGVEPNHFTFSSVLKSCSLEPGKVIHSQIL 439
           NVF ++++IH H  + L++ A   YSQMLS GVEPN FTFSSVLKSCSLE GKV+H Q +
Sbjct: 109 NVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSLESGKVLHCQAI 168

Query: 440 KLGFVSDVYVRTGLLDVYARGGDVV 514
           KLG  SD+YVRTGL+DVYARGGDVV
Sbjct: 169 KLGLGSDLYVRTGLVDVYARGGDVV 193



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
 Frame = +2

Query: 200 YSFHNRLDYSRTLFDAFDNPNVFFWTSLIHGHTLNGLYNDALSLYSQMLSYGVEPNHFTF 379
           YS    LD +R+LF+     +V  W  +I G+  +G+ N++L L+ +ML     PN  T 
Sbjct: 217 YSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTV 276

Query: 380 SSVLKSC----SLEPGKVIHSQILKLGFVSDVYVRTGLLDVYARGGDV 511
            +VL +C    +LE G+ IHS I   G   +V+V T L+D+Y++ G +
Sbjct: 277 LAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSL 324


>ref|XP_002524945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535780|gb|EEF37442.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 417

 Score =  172 bits (436), Expect = 3e-41
 Identities = 86/146 (58%), Positives = 110/146 (75%)
 Frame = +2

Query: 80  KLAFHLDKSKSIHHILQIHAVILKNGLEEHPILNFKLQRSYSFHNRLDYSRTLFDAFDNP 259
           KLA  +DKSKSI+++ QIHA + ++ L  HPIL+FKLQRSYS    L++S TLF+   NP
Sbjct: 36  KLAIIIDKSKSINNLHQIHAFLYRHNLHHHPILSFKLQRSYSSLGHLNHSLTLFNQTQNP 95

Query: 260 NVFFWTSLIHGHTLNGLYNDALSLYSQMLSYGVEPNHFTFSSVLKSCSLEPGKVIHSQIL 439
           NVFF+TS+IH HT + L+  AL  Y+QML+  V PN FTFSS+LKSC LE  ++IH+Q +
Sbjct: 96  NVFFYTSIIHAHTFHKLHYQALLFYAQMLTQKVTPNAFTFSSILKSCPLEFAQIIHAQAI 155

Query: 440 KLGFVSDVYVRTGLLDVYARGGDVVS 517
           K G  SD+YVRT L+DVYARGGD VS
Sbjct: 156 KFGLDSDLYVRTCLVDVYARGGDFVS 181



 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 34/108 (31%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
 Frame = +2

Query: 200 YSFHNRLDYSRTLFDAFDNPNVFFWTSLIHGHTLNGLYNDALSLYSQMLSYGVEPNHFTF 379
           ++ H  +  +R LFD  ++ ++  W  +I G+  +GL N+ L L+ QML   V P+  T 
Sbjct: 204 FAKHGMVKEARVLFDGLEDRDLVCWNVMIDGYVQHGLANEGLVLFRQMLKDRVRPSEVTV 263

Query: 380 SSVLKSC----SLEPGKVIHSQILKLGFVSDVYVRTGLLDVYARGGDV 511
            +VL +C    +LE G+ +HS I   G   + +V + L+D+Y++ G++
Sbjct: 264 LAVLSACGQIGALESGRWVHSYIQNNGIEINAHVGSALIDMYSKCGNL 311



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 28/90 (31%), Positives = 47/90 (52%)
 Frame = +2

Query: 131 IHAVILKNGLEEHPILNFKLQRSYSFHNRLDYSRTLFDAFDNPNVFFWTSLIHGHTLNGL 310
           +H+ I  NG+E +  +   L   YS    L+ +R +F+     +V  W S++ G+  +G 
Sbjct: 282 VHSYIQNNGIEINAHVGSALIDMYSKCGNLEDARLVFERIKYKDVVVWNSMVTGYATHGF 341

Query: 311 YNDALSLYSQMLSYGVEPNHFTFSSVLKSC 400
             DAL L+++M   G +P   TF  VL +C
Sbjct: 342 SQDALQLFNEMCGLGYQPTDITFIGVLSAC 371


>ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  170 bits (431), Expect = 1e-40
 Identities = 81/145 (55%), Positives = 103/145 (71%)
 Frame = +2

Query: 83  LAFHLDKSKSIHHILQIHAVILKNGLEEHPILNFKLQRSYSFHNRLDYSRTLFDAFDNPN 262
           LA  +D SKS HH+LQIHA +L+ GL  HPILNFKLQRSY+    L +S TLF    NPN
Sbjct: 26  LALLIDNSKSTHHLLQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPN 85

Query: 263 VFFWTSLIHGHTLNGLYNDALSLYSQMLSYGVEPNHFTFSSVLKSCSLEPGKVIHSQILK 442
           VF WT +I+ H    L++ ALS YSQML++ ++PN FT SS+LK+C+L P + +HS  +K
Sbjct: 86  VFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACTLHPARAVHSHAIK 145

Query: 443 LGFVSDVYVRTGLLDVYARGGDVVS 517
            G  S +YV TGL+D YARGGDV S
Sbjct: 146 FGLSSHLYVSTGLVDAYARGGDVAS 170



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
 Frame = +2

Query: 200 YSFHNRLDYSRTLFDAFDNPNVFFWTSLIHGHTLNGLYNDALSLYSQML-------SYGV 358
           Y+ H  L  +R LF+     +V  W  +I G+  +G  N+AL  + +M+       +  V
Sbjct: 193 YAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKV 252

Query: 359 EPNHFTFSSVLKSC----SLEPGKVIHSQILKLGFVSDVYVRTGLLDVYARGGDV 511
            PN  T  +VL SC    +LE GK +HS +   G   +V V T L+D+Y + G +
Sbjct: 253 RPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSL 307



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 27/91 (29%), Positives = 52/91 (57%)
 Frame = +2

Query: 131 IHAVILKNGLEEHPILNFKLQRSYSFHNRLDYSRTLFDAFDNPNVFFWTSLIHGHTLNGL 310
           +H+ +  NG++ +  +   L   Y     L+ +R +FD  +  +V  W S+I G+ ++G 
Sbjct: 278 VHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGF 337

Query: 311 YNDALSLYSQMLSYGVEPNHFTFSSVLKSCS 403
            ++AL L+ +M   GV+P+  TF +VL +C+
Sbjct: 338 SDEALQLFHEMCCIGVKPSDITFVAVLTACA 368


>emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  162 bits (410), Expect = 3e-38
 Identities = 77/111 (69%), Positives = 90/111 (81%)
 Frame = +2

Query: 185 KLQRSYSFHNRLDYSRTLFDAFDNPNVFFWTSLIHGHTLNGLYNDALSLYSQMLSYGVEP 364
           KLQRSY+   RLDYS  LF    NP+VFFWT++IHGH L GL+  AL+ Y+QML+ GVEP
Sbjct: 14  KLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEP 73

Query: 365 NHFTFSSVLKSCSLEPGKVIHSQILKLGFVSDVYVRTGLLDVYARGGDVVS 517
           N FTFSS+LK C +EPGK +HSQ +KLGF SD+YVRTGLLDVYARGGDVVS
Sbjct: 74  NAFTFSSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVS 124



 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 4/108 (3%)
 Frame = +2

Query: 200 YSFHNRLDYSRTLFDAFDNPNVFFWTSLIHGHTLNGLYNDALSLYSQMLSYGVEPNHFTF 379
           Y+ H  LD +R LFD  +  +   W  +I G+T NG+ N+AL L+ +ML    +PN  T 
Sbjct: 147 YAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTV 206

Query: 380 SSVLKSC----SLEPGKVIHSQILKLGFVSDVYVRTGLLDVYARGGDV 511
            SVL +C    +LE G+ +HS I   G   +V+V T L+D+Y++ G +
Sbjct: 207 LSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSL 254



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 28/90 (31%), Positives = 48/90 (53%)
 Frame = +2

Query: 131 IHAVILKNGLEEHPILNFKLQRSYSFHNRLDYSRTLFDAFDNPNVFFWTSLIHGHTLNGL 310
           +H+ I  NG++ +  +   L   YS    L+ +R +FD  D+ +V  W S+I G+ + G 
Sbjct: 225 VHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGF 284

Query: 311 YNDALSLYSQMLSYGVEPNHFTFSSVLKSC 400
             +AL L+  M   G+ P + TF  +L +C
Sbjct: 285 SQEALQLFKSMCRMGLHPTNITFIGILSAC 314