BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024498
         (492 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containi...   112   4e-23
emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera]   112   4e-23
ref|XP_002320971.1| predicted protein [Populus trichocarpa] gi|2...   110   9e-23
ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   110   2e-22
ref|XP_002515265.1| pentatricopeptide repeat-containing protein,...   108   3e-22

>ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
           mitochondrial [Vitis vinifera]
           gi|296089781|emb|CBI39600.3| unnamed protein product
           [Vitis vinifera]
          Length = 498

 Score =  112 bits (279), Expect = 4e-23
 Identities = 55/121 (45%), Positives = 84/121 (69%), Gaps = 3/121 (2%)
 Frame = +1

Query: 1   LERAVRKVGKP-SFRTLEMFMNFYLEKRQLDSALKYLKTAASMKN--EYEWKPSQDVVDM 171
           L  ++ K G     +TL++FM FYL+K QLD A+KYL   AS  +    +W P+++ + M
Sbjct: 365 LSESIAKRGPELKLKTLDLFMKFYLKKHQLDLAMKYLDMGASKADPENNKWFPTEETITM 424

Query: 172 FLRYLEEEKNVDGAENLFKSLKKLNSVSTEVYDSLLRTYVAAGIKDPEMHKRMKEDGIEA 351
           FL Y EE K+VD AE   ++++K++ + +++YDSLLRTY+AAG ++P M +RMK+DGIE 
Sbjct: 425 FLEYFEEVKDVDSAEKFCETMRKISRLDSKIYDSLLRTYIAAGKEEPLMSERMKDDGIEI 484

Query: 352 S 354
           S
Sbjct: 485 S 485


>emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera]
          Length = 494

 Score =  112 bits (279), Expect = 4e-23
 Identities = 55/121 (45%), Positives = 84/121 (69%), Gaps = 3/121 (2%)
 Frame = +1

Query: 1   LERAVRKVGKP-SFRTLEMFMNFYLEKRQLDSALKYLKTAASMKN--EYEWKPSQDVVDM 171
           L  ++ K G     +TL++FM FYL+K QLD A+KYL   AS  +    +W P+++ + M
Sbjct: 361 LSESIAKRGPELKLKTLDLFMKFYLKKHQLDLAMKYLDMGASKADPENNKWFPTEETITM 420

Query: 172 FLRYLEEEKNVDGAENLFKSLKKLNSVSTEVYDSLLRTYVAAGIKDPEMHKRMKEDGIEA 351
           FL Y EE K+VD AE   ++++K++ + +++YDSLLRTY+AAG ++P M +RMK+DGIE 
Sbjct: 421 FLEYFEEVKDVDSAEKFCETMRKISRLDSKIYDSLLRTYIAAGKEEPLMSERMKDDGIEI 480

Query: 352 S 354
           S
Sbjct: 481 S 481


>ref|XP_002320971.1| predicted protein [Populus trichocarpa] gi|222861744|gb|EEE99286.1|
           predicted protein [Populus trichocarpa]
          Length = 473

 Score =  110 bits (276), Expect = 9e-23
 Identities = 54/107 (50%), Positives = 71/107 (66%)
 Frame = +1

Query: 37  FRTLEMFMNFYLEKRQLDSALKYLKTAASMKNEYEWKPSQDVVDMFLRYLEEEKNVDGAE 216
           F   EMFM F+L+  QLD ALK++K A S   E EW+P    V  F  Y E+EK+V+GAE
Sbjct: 356 FNAREMFMVFFLKNHQLDLALKHMKAAFSEVKEIEWQPEPKTVSAFFAYFEDEKDVNGAE 415

Query: 217 NLFKSLKKLNSVSTEVYDSLLRTYVAAGIKDPEMHKRMKEDGIEASP 357
            L K LK +N + +  YD LL+TY+AAG   PEM +R++EDGIE +P
Sbjct: 416 RLCKILKHINRLDSNAYDLLLKTYIAAGKLAPEMRQRLEEDGIEINP 462


>ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02370, mitochondrial-like [Vitis vinifera]
          Length = 506

 Score =  110 bits (274), Expect = 2e-22
 Identities = 55/116 (47%), Positives = 78/116 (67%)
 Frame = +1

Query: 1   LERAVRKVGKPSFRTLEMFMNFYLEKRQLDSALKYLKTAASMKNEYEWKPSQDVVDMFLR 180
           L  AV++   P +  L+MFM  +L+ R++D+ALKY++ AAS     EW+P+ + V  FL+
Sbjct: 378 LYEAVKRSSGPFYTALDMFMAHHLKVREIDTALKYMEAAASEVKNNEWQPAPERVLAFLK 437

Query: 181 YLEEEKNVDGAENLFKSLKKLNSVSTEVYDSLLRTYVAAGIKDPEMHKRMKEDGIE 348
           Y EEEK+V+GAE   K LK ++ + +  Y  LL+T VAAG  +PEM KRMKED IE
Sbjct: 438 YFEEEKDVEGAEKFCKILKNISGLDSNAYQLLLQTXVAAGRTEPEMRKRMKEDDIE 493


>ref|XP_002515265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545745|gb|EEF47249.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 504

 Score =  108 bits (271), Expect = 3e-22
 Identities = 53/115 (46%), Positives = 77/115 (66%)
 Frame = +1

Query: 10  AVRKVGKPSFRTLEMFMNFYLEKRQLDSALKYLKTAASMKNEYEWKPSQDVVDMFLRYLE 189
           A+++   P F+  E FM F+L+  QLD ALK+++ A S   ++EWKP Q+ V+ +  Y  
Sbjct: 377 ALKRTRGPFFKARERFMLFFLKIHQLDLALKHMRAAFSESEKHEWKPLQETVNAYFDYFR 436

Query: 190 EEKNVDGAENLFKSLKKLNSVSTEVYDSLLRTYVAAGIKDPEMHKRMKEDGIEAS 354
            EK+VDGAE L K LK +N +++ VY  LL+TY+AAG   PEM +R++ED IE S
Sbjct: 437 TEKDVDGAEKLSKILKHINCLNSSVYSLLLKTYIAAGKLAPEMRQRLEEDNIEIS 491