BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024469
         (500 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thalia...    64   1e-08
gb|AFP55576.1| hypothetical protein [Rosa rugosa]                      64   1e-08
ref|XP_002327939.1| predicted protein [Populus trichocarpa] gi|2...    62   5e-08
ref|NP_178523.1| RNase H domain-containing protein [Arabidopsis ...    62   6e-08
gb|AAO11668.1| hypothetical protein [Arabidopsis thaliana]             60   1e-07

>ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|9294184|dbj|BAB02086.1| reverse transcriptase-like
           protein [Arabidopsis thaliana]
           gi|332643482|gb|AEE77003.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 343

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
 Frame = +3

Query: 36  IMDAIW*VRNNKKFQGSKSNKQSTLQHAYTIL*DWNRAFTNDVEVTDEQLENDSTSTPP- 212
           I+  +W  RN   FQ    + Q+TLQ A   + +W    T  V+  ++Q+ +     P  
Sbjct: 123 ILWRLWKSRNQLVFQQKSISWQNTLQRARNDVQEWEDTNTY-VQSLNQQVHSSRHQQPTM 181

Query: 213 -ESSWINPPPGWVKLNFDASFHQGCYYTNIAVIGRDSRGEFLGGKVSRVKTTSPG-EAEA 386
             + W  PP  W+K N+D +F+          + RD  G ++G   +   TTS   E+E 
Sbjct: 182 ARTKWQRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEF 241

Query: 387 LAAELTVNYAV*QYWREVIVEGDAKLV 467
            A  + + +A  Q +R+VI EGD+K V
Sbjct: 242 QALIIAMQHAWSQGYRKVIFEGDSKQV 268


>gb|AFP55576.1| hypothetical protein [Rosa rugosa]
          Length = 237

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 41/96 (42%), Positives = 50/96 (52%)
 Frame = +3

Query: 207 PPESSWINPPPGWVKLNFDASFHQGCYYTNIAVIGRDSRGEFLGGKVSRVKTTSPGEAEA 386
           P + SW  PP   V++N DA + Q      IA I RDSRG  LGGK  R+   SP  AEA
Sbjct: 21  PRQQSWCPPPLNTVRINTDACWFQSSLSGAIAAIARDSRGAVLGGKAFRILAPSPMAAEA 80

Query: 387 LAAELTVNYAV*QYWREVIVEGDAKLVILACANMIS 494
           LA    V  A+     EVI+  D+K +I  C  M S
Sbjct: 81  LALREAVCLAMDFTLGEVIISSDSKSLI-QCLEMRS 115


>ref|XP_002327939.1| predicted protein [Populus trichocarpa] gi|222837348|gb|EEE75727.1|
           predicted protein [Populus trichocarpa]
          Length = 248

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 36/91 (39%), Positives = 52/91 (57%)
 Frame = +3

Query: 222 WINPPPGWVKLNFDASFHQGCYYTNIAVIGRDSRGEFLGGKVSRVKTTSPGEAEALAAEL 401
           W  PP G+VKLN DAS+   C  +++A + RD  G +L G  SRVK+ S  EAE LA   
Sbjct: 55  WKKPPLGFVKLNTDASYKYNCSKSSVAGVCRDEHGIWLFGFSSRVKSGSAFEAELLAVRE 114

Query: 402 TVNYAV*QYWREVIVEGDAKLVILACANMIS 494
            +  A  +  + VIVE D++ V+    N ++
Sbjct: 115 ALKLAWDKGLKRVIVESDSESVVNRIRNQLT 145


>ref|NP_178523.1| RNase H domain-containing protein [Arabidopsis thaliana]
           gi|4587608|gb|AAD25836.1| putative non-LTR retrolelement
           reverse transcriptase [Arabidopsis thaliana]
           gi|50058827|gb|AAT69158.1| hypothetical protein
           At2g04420 [Arabidopsis thaliana]
           gi|330250739|gb|AEC05833.1| RNase H domain-containing
           protein [Arabidopsis thaliana]
          Length = 221

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 6/146 (4%)
 Frame = +3

Query: 48  IW*VRNNKKFQGSKSNKQSTLQHAYTIL*DWNRA-----FTNDVEVTDEQLENDSTSTPP 212
           +W  RN   FQ    + QSTL+ A   + +W  A       N   V +     +ST    
Sbjct: 4   LWRSRNQLVFQHQNLSWQSTLKRAKDDVQEWENAQEYIQSLNHYTVREGCNNREST---- 59

Query: 213 ESSWINPPPGWVKLNFDASFHQGCYYTNIAVIGRDSRGEFLGGKVSRVKTTSPG-EAEAL 389
              W  PP GW+K N+D SF+     TN   + RD +G + G   +   T +   E+E  
Sbjct: 60  HQKWEQPPMGWIKCNYDGSFNYRTQQTNSGWLIRDDKGFYKGAAQAVGGTMNNALESELQ 119

Query: 390 AAELTVNYAV*QYWREVIVEGDAKLV 467
           A  + + +   Q +R+VI EGD+K V
Sbjct: 120 ALVMAMQHTWSQGYRKVIFEGDSKQV 145


>gb|AAO11668.1| hypothetical protein [Arabidopsis thaliana]
          Length = 221

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 45/146 (30%), Positives = 66/146 (45%), Gaps = 6/146 (4%)
 Frame = +3

Query: 48  IW*VRNNKKFQGSKSNKQSTLQHAYTIL*DWNRA-----FTNDVEVTDEQLENDSTSTPP 212
           +W  RN   FQ    + QSTL+ A   + +W  A       N   V +     +ST    
Sbjct: 4   LWRSRNQLVFQHQNLSWQSTLKRAKDDVQEWENAQEYIQSLNHYTVREGCNNREST---- 59

Query: 213 ESSWINPPPGWVKLNFDASFHQGCYYTNIAVIGRDSRGEFLGGKVSRVKTTSPG-EAEAL 389
              W  PP GW+K N+D SF      TN   + RD +G + G   +   T +   E+E  
Sbjct: 60  HQKWEQPPMGWIKCNYDGSFTYRTQQTNSGWLIRDDKGFYKGAAQAVGGTMNNALESELQ 119

Query: 390 AAELTVNYAV*QYWREVIVEGDAKLV 467
           A  + + +   Q +R+VI EGD+K V
Sbjct: 120 ALVMAMQHTWSQGYRKVIFEGDSKQV 145