BLASTX nr result
ID: Coptis24_contig00024427
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00024427
(261 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EEC68613.1| hypothetical protein OsI_36980 [Oryza sativa Indi... 97 1e-18
gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonic... 95 7e-18
gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japo... 95 7e-18
ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containi... 94 1e-17
emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera] 94 1e-17
>gb|EEC68613.1| hypothetical protein OsI_36980 [Oryza sativa Indica Group]
Length = 981
Score = 97.4 bits (241), Expect = 1e-18
Identities = 46/86 (53%), Positives = 61/86 (70%)
Frame = +1
Query: 1 LEFFSMLYTTNGIRTHVTFASVLTACSHREALTEGKIIHALIFREGLHENLLLGNALITM 180
L+ L+ TN I H+TF+S L ACS AL +GK++HA++ + L NLL+GN+LITM
Sbjct: 332 LKTLGQLFHTNEIPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITM 391
Query: 181 YGKCGVMGYAENIFQSMPQHDVVTWN 258
YGKC M AE +FQSMP HDVV++N
Sbjct: 392 YGKCNSMEDAEKVFQSMPTHDVVSYN 417
Score = 58.5 bits (140), Expect = 5e-07
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Frame = +1
Query: 58 ASVLTACSHR---EALTEGKIIHALIFREGLHENLLLGNALITMYGKCGVMGYAENIFQS 228
AS++TAC R E + G IHAL R GL N+ +G AL+ +YG G++ A +F
Sbjct: 45 ASLVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDARRLFWE 104
Query: 229 MPQHDVVTW 255
MP+ +VV+W
Sbjct: 105 MPERNVVSW 113
>gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 1000
Score = 94.7 bits (234), Expect = 7e-18
Identities = 44/86 (51%), Positives = 60/86 (69%)
Frame = +1
Query: 1 LEFFSMLYTTNGIRTHVTFASVLTACSHREALTEGKIIHALIFREGLHENLLLGNALITM 180
L+ L+ TN H+TF+S L ACS AL +GK++HA++ + L NLL+GN+LITM
Sbjct: 332 LKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITM 391
Query: 181 YGKCGVMGYAENIFQSMPQHDVVTWN 258
YGKC M AE +FQSMP HD+V++N
Sbjct: 392 YGKCNSMEDAEKVFQSMPTHDIVSYN 417
Score = 59.3 bits (142), Expect = 3e-07
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Frame = +1
Query: 58 ASVLTACSHR---EALTEGKIIHALIFREGLHENLLLGNALITMYGKCGVMGYAENIFQS 228
AS++TAC R E + G IHAL R GL N+ +G AL+ +YG G++ A+ +F
Sbjct: 45 ASLVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWE 104
Query: 229 MPQHDVVTW 255
MP+ +VV+W
Sbjct: 105 MPERNVVSW 113
>gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
Length = 1215
Score = 94.7 bits (234), Expect = 7e-18
Identities = 44/86 (51%), Positives = 60/86 (69%)
Frame = +1
Query: 1 LEFFSMLYTTNGIRTHVTFASVLTACSHREALTEGKIIHALIFREGLHENLLLGNALITM 180
L+ L+ TN H+TF+S L ACS AL +GK++HA++ + L NLL+GN+LITM
Sbjct: 634 LKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITM 693
Query: 181 YGKCGVMGYAENIFQSMPQHDVVTWN 258
YGKC M AE +FQSMP HD+V++N
Sbjct: 694 YGKCNSMEDAEKVFQSMPTHDIVSYN 719
Score = 59.3 bits (142), Expect = 3e-07
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Frame = +1
Query: 58 ASVLTACSHR---EALTEGKIIHALIFREGLHENLLLGNALITMYGKCGVMGYAENIFQS 228
AS++TAC R E + G IHAL R GL N+ +G AL+ +YG G++ A+ +F
Sbjct: 347 ASLVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWE 406
Query: 229 MPQHDVVTW 255
MP+ +VV+W
Sbjct: 407 MPERNVVSW 415
>ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
[Vitis vinifera]
Length = 1724
Score = 94.0 bits (232), Expect = 1e-17
Identities = 45/86 (52%), Positives = 58/86 (67%)
Frame = +1
Query: 1 LEFFSMLYTTNGIRTHVTFASVLTACSHREALTEGKIIHALIFREGLHENLLLGNALITM 180
L+ + L + HVTFAS L ACS+ E L E KI+HALI G H+ L++GNAL+TM
Sbjct: 1134 LKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTM 1193
Query: 181 YGKCGVMGYAENIFQSMPQHDVVTWN 258
YGK G+M A+ + Q+MPQ D VTWN
Sbjct: 1194 YGKLGMMMEAKKVLQTMPQPDRVTWN 1219
Score = 58.5 bits (140), Expect = 5e-07
Identities = 26/70 (37%), Positives = 45/70 (64%)
Frame = +1
Query: 52 TFASVLTACSHREALTEGKIIHALIFREGLHENLLLGNALITMYGKCGVMGYAENIFQSM 231
T +S+L+ CS + L G+ IH L+ + GL N+ + N L+T+Y + G AE +FQ+M
Sbjct: 1050 TLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAM 1109
Query: 232 PQHDVVTWNT 261
+ D+++WN+
Sbjct: 1110 TERDLISWNS 1119
Score = 54.7 bits (130), Expect = 8e-06
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = +1
Query: 58 ASVLTACSHREALT-EGKIIHALIFREGLHENLLLGNALITMYGKCGVMGYAENIFQSMP 234
AS++TACS + EG +H + + G+ ++ +G AL+ YG G++ A+ +F+ MP
Sbjct: 849 ASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMP 908
Query: 235 QHDVVTWNT 261
H+VV+W +
Sbjct: 909 DHNVVSWTS 917
>emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
Length = 1166
Score = 94.0 bits (232), Expect = 1e-17
Identities = 45/86 (52%), Positives = 58/86 (67%)
Frame = +1
Query: 1 LEFFSMLYTTNGIRTHVTFASVLTACSHREALTEGKIIHALIFREGLHENLLLGNALITM 180
L+ + L + HVTFAS L ACS+ E L E KI+HALI G H+ L++GNAL+TM
Sbjct: 484 LKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTM 543
Query: 181 YGKCGVMGYAENIFQSMPQHDVVTWN 258
YGK G+M A+ + Q+MPQ D VTWN
Sbjct: 544 YGKLGMMMEAKKVLQTMPQPDRVTWN 569
Score = 58.5 bits (140), Expect = 5e-07
Identities = 26/70 (37%), Positives = 45/70 (64%)
Frame = +1
Query: 52 TFASVLTACSHREALTEGKIIHALIFREGLHENLLLGNALITMYGKCGVMGYAENIFQSM 231
T +S+L+ CS + L G+ IH L+ + GL N+ + N L+T+Y + G AE +FQ+M
Sbjct: 400 TLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAM 459
Query: 232 PQHDVVTWNT 261
+ D+++WN+
Sbjct: 460 TERDLISWNS 469
Score = 54.7 bits (130), Expect = 8e-06
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = +1
Query: 58 ASVLTACSHREALT-EGKIIHALIFREGLHENLLLGNALITMYGKCGVMGYAENIFQSMP 234
AS++TACS + EG +H + + G+ ++ +G AL+ YG G++ A+ +F+ MP
Sbjct: 199 ASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMP 258
Query: 235 QHDVVTWNT 261
H+VV+W +
Sbjct: 259 DHNVVSWTS 267