BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024414
         (512 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI38481.3| unnamed protein product [Vitis vinifera]              235   2e-60
ref|XP_004134800.1| PREDICTED: pentatricopeptide repeat-containi...   210   1e-52
ref|NP_193380.3| pentatricopeptide (PPR) repeat-containing prote...   188   3e-46
ref|XP_003594259.1| Thymidine kinase [Medicago truncatula] gi|35...   185   3e-45
ref|XP_002868131.1| predicted protein [Arabidopsis lyrata subsp....   172   3e-41

>emb|CBI38481.3| unnamed protein product [Vitis vinifera]
          Length = 665

 Score =  235 bits (600), Expect = 2e-60
 Identities = 111/167 (66%), Positives = 141/167 (84%)
 Frame = -2

Query: 502 VDQKLKSLCYSGRIIQAVDILSHTESQLGAQTYALLLQECIFRKQLIVGKRIHAQMFKVG 323
           +D+ LK LC+SGR+++AV +L  T  Q+   TYALLLQECIF+K+   G+RIHAQM  VG
Sbjct: 62  LDETLKGLCFSGRVMEAVGLLCRTGLQVEPATYALLLQECIFKKEFKTGRRIHAQMIVVG 121

Query: 322 FRPDQYLQTKLIILYAKDGDLDTAHILFDTIPERSLVSWNAMISGYVQKGLEEMGLDFYN 143
           + PD+YL+TKL+IL+AK GDLDT+HILFD + ++SL+SWNAMI+GYVQKGLEE GL+ Y+
Sbjct: 122 YYPDEYLKTKLLILHAKTGDLDTSHILFDDLSKKSLISWNAMIAGYVQKGLEEEGLNLYD 181

Query: 142 KMRRSGFMPDQFTFSSVFRACATLAAIEKGKQAHAVMIKSDIKDNVV 2
           +MR+SG  PDQ+TF+SVFRACATLA +EKGKQAH VMIKS IK+NVV
Sbjct: 182 EMRQSGLTPDQYTFASVFRACATLATLEKGKQAHCVMIKSQIKENVV 228



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 37/119 (31%), Positives = 62/119 (52%)
 Frame = -2

Query: 409 TYALLLQECIFRKQLIVGKRIHAQMFKVGFRPDQYLQTKLIILYAKDGDLDTAHILFDTI 230
           T+A + + C     L  GK+ H  M K   + +  + + L+ +Y K   L   H +F+  
Sbjct: 194 TFASVFRACATLATLEKGKQAHCVMIKSQIKENVVVNSALMDMYFKCSSLYDGHRVFNKS 253

Query: 229 PERSLVSWNAMISGYVQKGLEEMGLDFYNKMRRSGFMPDQFTFSSVFRACATLAAIEKG 53
             R++++W A+ISGY Q G     L F++KM+  GF P+  TF +V  AC+    + +G
Sbjct: 254 LNRNVITWTALISGYGQHGRVAEVLVFFSKMKTEGFRPNYVTFLAVISACSHGGLVNEG 312


>ref|XP_004134800.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g16470-like [Cucumis sativus]
           gi|449526397|ref|XP_004170200.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g16470-like [Cucumis sativus]
          Length = 486

 Score =  210 bits (534), Expect = 1e-52
 Identities = 100/166 (60%), Positives = 134/166 (80%)
 Frame = -2

Query: 499 DQKLKSLCYSGRIIQAVDILSHTESQLGAQTYALLLQECIFRKQLIVGKRIHAQMFKVGF 320
           D+ L+ LC +G++ +AV +L     Q  ++TY LLLQECIFRK+ + GKRIHAQM  VG+
Sbjct: 60  DKTLRGLCLTGKLAEAVALLCCMALQFHSKTYCLLLQECIFRKEYMKGKRIHAQMVVVGY 119

Query: 319 RPDQYLQTKLIILYAKDGDLDTAHILFDTIPERSLVSWNAMISGYVQKGLEEMGLDFYNK 140
            P++YL TKL+ILYAK GDL+TA++L + + E+SLVSWN++I+GYVQKGL E+GL+FY K
Sbjct: 120 VPNEYLNTKLLILYAKSGDLETAYVLHEHLLEKSLVSWNSLIAGYVQKGLAEVGLEFYLK 179

Query: 139 MRRSGFMPDQFTFSSVFRACATLAAIEKGKQAHAVMIKSDIKDNVV 2
           MR+SG MPDQ+TF+SV RACA+LA++E GK+AH V+IK  I DNVV
Sbjct: 180 MRQSGLMPDQYTFASVLRACASLASLEHGKRAHGVLIKCQIGDNVV 225



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 36/129 (27%), Positives = 63/129 (48%)
 Frame = -2

Query: 409 TYALLLQECIFRKQLIVGKRIHAQMFKVGFRPDQYLQTKLIILYAKDGDLDTAHILFDTI 230
           T+A +L+ C     L  GKR H  + K     +  + + L+ +Y K   L   H  F+  
Sbjct: 191 TFASVLRACASLASLEHGKRAHGVLIKCQIGDNVVVSSALVDMYFKCSSLSDGHKAFNKS 250

Query: 229 PERSLVSWNAMISGYVQKGLEEMGLDFYNKMRRSGFMPDQFTFSSVFRACATLAAIEKGK 50
             R++++W A+ISGY Q G     L+ ++ M   G+ P+  TF +V  AC+    + +  
Sbjct: 251 SNRNVITWTALISGYGQHGRISEVLESFHSMINKGYRPNYVTFLAVLAACSRGGFVSEAW 310

Query: 49  QAHAVMIKS 23
              ++M K+
Sbjct: 311 NYFSLMTKT 319


>ref|NP_193380.3| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana] gi|223635634|sp|O23491.2|PP315_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g16470 gi|332658358|gb|AEE83758.1| pentatricopeptide
           (PPR) repeat-containing protein [Arabidopsis thaliana]
          Length = 501

 Score =  188 bits (478), Expect = 3e-46
 Identities = 95/167 (56%), Positives = 124/167 (74%)
 Frame = -2

Query: 502 VDQKLKSLCYSGRIIQAVDILSHTESQLGAQTYALLLQECIFRKQLIVGKRIHAQMFKVG 323
           +D+ LK LC +GR+ +AV +L  +  Q+  +TYA+LLQEC  RK+   GKRIHAQMF VG
Sbjct: 79  LDKTLKGLCVTGRLKEAVGLLWSSGLQVEPETYAVLLQECKQRKEYTKGKRIHAQMFVVG 138

Query: 322 FRPDQYLQTKLIILYAKDGDLDTAHILFDTIPERSLVSWNAMISGYVQKGLEEMGLDFYN 143
           F  ++YL+ KL+ILYA  GDL TA ILF ++  R L+ WNAMISGYVQKGLE+ GL  Y 
Sbjct: 139 FALNEYLKVKLLILYALSGDLQTAGILFRSLKIRDLIPWNAMISGYVQKGLEQEGLFIYY 198

Query: 142 KMRRSGFMPDQFTFSSVFRACATLAAIEKGKQAHAVMIKSDIKDNVV 2
            MR++  +PDQ+TF+SVFRAC+ L  +E GK+AHAVMIK  IK N++
Sbjct: 199 DMRQNRIVPDQYTFASVFRACSALDRLEHGKRAHAVMIKRCIKSNII 245



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 39/130 (30%), Positives = 64/130 (49%)
 Frame = -2

Query: 409 TYALLLQECIFRKQLIVGKRIHAQMFKVGFRPDQYLQTKLIILYAKDGDLDTAHILFDTI 230
           T+A + + C    +L  GKR HA M K   + +  + + L+ +Y K       H +FD +
Sbjct: 211 TFASVFRACSALDRLEHGKRAHAVMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQL 270

Query: 229 PERSLVSWNAMISGYVQKGLEEMGLDFYNKMRRSGFMPDQFTFSSVFRACATLAAIEKGK 50
             R++++W ++ISGY   G     L  + KM+  G  P+  TF  V  AC     ++KG 
Sbjct: 271 STRNVITWTSLISGYGYHGKVSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKGW 330

Query: 49  QAHAVMIKSD 20
           + H   +K D
Sbjct: 331 E-HFYSMKRD 339


>ref|XP_003594259.1| Thymidine kinase [Medicago truncatula] gi|355483307|gb|AES64510.1|
           Thymidine kinase [Medicago truncatula]
          Length = 644

 Score =  185 bits (470), Expect = 3e-45
 Identities = 90/167 (53%), Positives = 124/167 (74%)
 Frame = -2

Query: 502 VDQKLKSLCYSGRIIQAVDILSHTESQLGAQTYALLLQECIFRKQLIVGKRIHAQMFKVG 323
           +D+ L+ LC SG++  A+ +L  T   +  +TY+L+LQECIF K    G+RIHA M  VG
Sbjct: 142 LDKVLQGLCVSGKLEDAIRLLYRTGFPVHPRTYSLMLQECIFWKNYGRGRRIHAHMIIVG 201

Query: 322 FRPDQYLQTKLIILYAKDGDLDTAHILFDTIPERSLVSWNAMISGYVQKGLEEMGLDFYN 143
           + P++YL+ KL+ILYAK G L+TA  LF+ + E+   +WNAMI+GYVQKGLEE+GL+ + 
Sbjct: 202 YVPNEYLKIKLLILYAKSGCLETAQFLFNNLVEKDSFAWNAMIAGYVQKGLEEVGLETFY 261

Query: 142 KMRRSGFMPDQFTFSSVFRACATLAAIEKGKQAHAVMIKSDIKDNVV 2
           +MR++   PDQ+TF+SVFRACATLA +E G+QAH VM+K  I DNVV
Sbjct: 262 EMRQASLRPDQYTFASVFRACATLALLEPGRQAHGVMLKCQIGDNVV 308



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 35/128 (27%), Positives = 62/128 (48%)
 Frame = -2

Query: 409 TYALLLQECIFRKQLIVGKRIHAQMFKVGFRPDQYLQTKLIILYAKDGDLDTAHILFDTI 230
           T+A + + C     L  G++ H  M K     +  + + LI +Y K   +    +LFD  
Sbjct: 274 TFASVFRACATLALLEPGRQAHGVMLKCQIGDNVVVNSALIDMYFKCSCICDGRLLFDKC 333

Query: 229 PERSLVSWNAMISGYVQKGLEEMGLDFYNKMRRSGFMPDQFTFSSVFRACATLAAIEKGK 50
             R+ ++W  +ISGY + G     LD +++M    F P+  TF +V  AC+ +  I++  
Sbjct: 334 LSRNTITWTTLISGYGKHGQVVEVLDSFHRMISESFRPNYVTFLAVLVACSHVGLIDEAY 393

Query: 49  QAHAVMIK 26
           +    MI+
Sbjct: 394 KYFQSMIR 401


>ref|XP_002868131.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297313967|gb|EFH44390.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 484

 Score =  172 bits (435), Expect = 3e-41
 Identities = 87/167 (52%), Positives = 116/167 (69%)
 Frame = -2

Query: 502 VDQKLKSLCYSGRIIQAVDILSHTESQLGAQTYALLLQECIFRKQLIVGKRIHAQMFKVG 323
           +D+ LK LC +GR+ +AV +L  +  Q+  +TYA+LLQEC  RK+   GKRIHAQM  VG
Sbjct: 79  LDKTLKGLCVTGRLKEAVGLLWRSRLQVEPETYAVLLQECKQRKEYTKGKRIHAQMIVVG 138

Query: 322 FRPDQYLQTKLIILYAKDGDLDTAHILFDTIPERSLVSWNAMISGYVQKGLEEMGLDFYN 143
           + P++YL+ KL+ILYA D                 L+ WNAMISGYVQKGLE+ GL  Y 
Sbjct: 139 YAPNEYLKVKLLILYALD-----------------LIPWNAMISGYVQKGLEQEGLYIYY 181

Query: 142 KMRRSGFMPDQFTFSSVFRACATLAAIEKGKQAHAVMIKSDIKDNVV 2
            MR++G +PDQ+TF+SVFR C+ LA++E GK+AHAVMIK  IK N++
Sbjct: 182 DMRQNGIVPDQYTFASVFRVCSALASLEHGKRAHAVMIKRHIKSNII 228



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 36/119 (30%), Positives = 58/119 (48%)
 Frame = -2

Query: 409 TYALLLQECIFRKQLIVGKRIHAQMFKVGFRPDQYLQTKLIILYAKDGDLDTAHILFDTI 230
           T+A + + C     L  GKR HA M K   + +  + + L+ +Y K       H +FD +
Sbjct: 194 TFASVFRVCSALASLEHGKRAHAVMIKRHIKSNIIVDSALVDMYFKCSSFSDGHKVFDQL 253

Query: 229 PERSLVSWNAMISGYVQKGLEEMGLDFYNKMRRSGFMPDQFTFSSVFRACATLAAIEKG 53
             R++V+W +++SGY   G     L  + KM+  G  P+  TF  V  AC     ++KG
Sbjct: 254 STRNVVTWTSLMSGYGYHGKVSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKG 312