BLASTX nr result
ID: Coptis24_contig00024368
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00024368
(214 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selag... 75 5e-12
ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selag... 75 5e-12
ref|XP_003620148.1| Pentatricopeptide repeat-containing protein ... 75 5e-12
ref|XP_002309562.1| predicted protein [Populus trichocarpa] gi|2... 74 9e-12
ref|XP_002308709.1| predicted protein [Populus trichocarpa] gi|2... 74 9e-12
>ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
gi|300163955|gb|EFJ30565.1| hypothetical protein
SELMODRAFT_89033 [Selaginella moellendorffii]
Length = 600
Score = 75.1 bits (183), Expect = 5e-12
Identities = 39/73 (53%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Frame = +2
Query: 2 VITFNILVDALCK---EGRTNDAFDLLQVMSQRGIIPDVVTYNALIDGLFTSGKGKDAIG 172
V+T+NILVD LCK EGR +A L M ++G +PDVVTY+ALIDGL +GK DA
Sbjct: 433 VVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARR 492
Query: 173 LLNEMTGRGILPN 211
LL M +G +PN
Sbjct: 493 LLGAMEAKGCIPN 505
Score = 67.0 bits (162), Expect = 1e-09
Identities = 30/70 (42%), Positives = 47/70 (67%)
Frame = +2
Query: 2 VITFNILVDALCKEGRTNDAFDLLQVMSQRGIIPDVVTYNALIDGLFTSGKGKDAIGLLN 181
V T+NIL+D L KE R N+AF+L + + G+ PD +TY IDGL +G+ +DA+ +L
Sbjct: 293 VPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLK 352
Query: 182 EMTGRGILPN 211
+M +G +P+
Sbjct: 353 DMDEKGCVPD 362
Score = 62.8 bits (151), Expect = 3e-08
Identities = 29/69 (42%), Positives = 45/69 (65%)
Frame = +2
Query: 5 ITFNILVDALCKEGRTNDAFDLLQVMSQRGIIPDVVTYNALIDGLFTSGKGKDAIGLLNE 184
IT+ + +D LCK GR DA +L+ M ++G +PDVV++NA+I+GL + +A LL+
Sbjct: 329 ITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSG 388
Query: 185 MTGRGILPN 211
M +G PN
Sbjct: 389 MEAKGCSPN 397
Score = 57.8 bits (138), Expect = 9e-07
Identities = 26/70 (37%), Positives = 42/70 (60%)
Frame = +2
Query: 2 VITFNILVDALCKEGRTNDAFDLLQVMSQRGIIPDVVTYNALIDGLFTSGKGKDAIGLLN 181
V+T+N L+ CK G+ ++A + +RG +PDVVTYNALI+G + K +A +L
Sbjct: 120 VVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQ 179
Query: 182 EMTGRGILPN 211
M ++P+
Sbjct: 180 RMVSESLVPD 189
Score = 56.2 bits (134), Expect = 3e-06
Identities = 29/70 (41%), Positives = 43/70 (61%)
Frame = +2
Query: 2 VITFNILVDALCKEGRTNDAFDLLQVMSQRGIIPDVVTYNALIDGLFTSGKGKDAIGLLN 181
V+T++ L+D L K G+ +DA LL M +G IP+V TYN+LI GL K +A+ L
Sbjct: 471 VVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFV 530
Query: 182 EMTGRGILPN 211
M +G +P+
Sbjct: 531 AMVEKGCVPD 540
Score = 55.5 bits (132), Expect = 4e-06
Identities = 28/69 (40%), Positives = 40/69 (57%)
Frame = +2
Query: 5 ITFNILVDALCKEGRTNDAFDLLQVMSQRGIIPDVVTYNALIDGLFTSGKGKDAIGLLNE 184
IT+N L+ LC GR +DA L + M + G PDVVTYN L+ G GK +A+ + +
Sbjct: 86 ITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDG 145
Query: 185 MTGRGILPN 211
RG +P+
Sbjct: 146 AVKRGFVPD 154
Score = 54.3 bits (129), Expect = 1e-05
Identities = 26/70 (37%), Positives = 44/70 (62%)
Frame = +2
Query: 2 VITFNILVDALCKEGRTNDAFDLLQVMSQRGIIPDVVTYNALIDGLFTSGKGKDAIGLLN 181
V+T+N L++ CK + ++A +LQ M ++PDVVTYN+L++GL +G+ +A L+
Sbjct: 155 VVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLI- 213
Query: 182 EMTGRGILPN 211
+G PN
Sbjct: 214 --VDKGFSPN 221
>ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
gi|300156342|gb|EFJ22971.1| hypothetical protein
SELMODRAFT_53130 [Selaginella moellendorffii]
Length = 440
Score = 75.1 bits (183), Expect = 5e-12
Identities = 39/73 (53%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Frame = +2
Query: 2 VITFNILVDALCK---EGRTNDAFDLLQVMSQRGIIPDVVTYNALIDGLFTSGKGKDAIG 172
V+T+NILVD LCK EGR +A L M ++G +PDVVTY+ALIDGL +GK DA
Sbjct: 323 VVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARR 382
Query: 173 LLNEMTGRGILPN 211
LL M +G +PN
Sbjct: 383 LLGAMEAKGCIPN 395
Score = 67.0 bits (162), Expect = 1e-09
Identities = 30/70 (42%), Positives = 47/70 (67%)
Frame = +2
Query: 2 VITFNILVDALCKEGRTNDAFDLLQVMSQRGIIPDVVTYNALIDGLFTSGKGKDAIGLLN 181
V T+NIL+D L KE R N+AF+L + + G+ PD +TY IDGL +G+ +DA+ +L
Sbjct: 183 VPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLK 242
Query: 182 EMTGRGILPN 211
+M +G +P+
Sbjct: 243 DMDEKGCVPD 252
Score = 62.8 bits (151), Expect = 3e-08
Identities = 29/69 (42%), Positives = 45/69 (65%)
Frame = +2
Query: 5 ITFNILVDALCKEGRTNDAFDLLQVMSQRGIIPDVVTYNALIDGLFTSGKGKDAIGLLNE 184
IT+ + +D LCK GR DA +L+ M ++G +PDVV++NA+I+GL + +A LL+
Sbjct: 219 ITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSG 278
Query: 185 MTGRGILPN 211
M +G PN
Sbjct: 279 MEAKGCSPN 287
Score = 57.0 bits (136), Expect = 2e-06
Identities = 26/70 (37%), Positives = 41/70 (58%)
Frame = +2
Query: 2 VITFNILVDALCKEGRTNDAFDLLQVMSQRGIIPDVVTYNALIDGLFTSGKGKDAIGLLN 181
V+T+N L+ CK G ++A + +RG +PDVVTYNALI+G + K +A +L
Sbjct: 45 VVTYNTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQ 104
Query: 182 EMTGRGILPN 211
M ++P+
Sbjct: 105 RMVSENLVPD 114
Score = 55.8 bits (133), Expect = 3e-06
Identities = 29/70 (41%), Positives = 43/70 (61%)
Frame = +2
Query: 2 VITFNILVDALCKEGRTNDAFDLLQVMSQRGIIPDVVTYNALIDGLFTSGKGKDAIGLLN 181
V+T++ L+D L K G+ +DA LL M +G IP+V TYN+LI GL K +A+ L
Sbjct: 361 VVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFV 420
Query: 182 EMTGRGILPN 211
M +G +P+
Sbjct: 421 AMVEKGCVPD 430
Score = 54.3 bits (129), Expect = 1e-05
Identities = 26/70 (37%), Positives = 44/70 (62%)
Frame = +2
Query: 2 VITFNILVDALCKEGRTNDAFDLLQVMSQRGIIPDVVTYNALIDGLFTSGKGKDAIGLLN 181
V+T+N L++ CK + ++A +LQ M ++PDVVTYN+L++GL +G+ +A L+
Sbjct: 80 VVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARMLI- 138
Query: 182 EMTGRGILPN 211
+G PN
Sbjct: 139 --VDKGFSPN 146
>ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|217074978|gb|ACJ85849.1| unknown [Medicago
truncatula] gi|355495163|gb|AES76366.1|
Pentatricopeptide repeat-containing protein [Medicago
truncatula]
Length = 465
Score = 75.1 bits (183), Expect = 5e-12
Identities = 34/70 (48%), Positives = 47/70 (67%)
Frame = +2
Query: 2 VITFNILVDALCKEGRTNDAFDLLQVMSQRGIIPDVVTYNALIDGLFTSGKGKDAIGLLN 181
V+ ++ ++D +CK+ NDAFDL M +GI P+VVTY+ALI G FT GK KDA+ L N
Sbjct: 227 VVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFN 286
Query: 182 EMTGRGILPN 211
+M I P+
Sbjct: 287 KMISENIKPD 296
Score = 60.8 bits (146), Expect = 1e-07
Identities = 29/70 (41%), Positives = 44/70 (62%)
Frame = +2
Query: 2 VITFNILVDALCKEGRTNDAFDLLQVMSQRGIIPDVVTYNALIDGLFTSGKGKDAIGLLN 181
V TFNILVD CK G+ + A L+ M RG P++VTY++++D L + + A+ LL
Sbjct: 297 VYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLT 356
Query: 182 EMTGRGILPN 211
++ +GI PN
Sbjct: 357 KLKDQGIRPN 366
Score = 56.6 bits (135), Expect = 2e-06
Identities = 27/66 (40%), Positives = 43/66 (65%)
Frame = +2
Query: 2 VITFNILVDALCKEGRTNDAFDLLQVMSQRGIIPDVVTYNALIDGLFTSGKGKDAIGLLN 181
++T++ ++DALCK R + A LL + +GI P++ TY LIDGL TSGK +DA +
Sbjct: 332 IVTYSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFE 391
Query: 182 EMTGRG 199
++ +G
Sbjct: 392 DLLVKG 397
>ref|XP_002309562.1| predicted protein [Populus trichocarpa] gi|222855538|gb|EEE93085.1|
predicted protein [Populus trichocarpa]
Length = 590
Score = 74.3 bits (181), Expect = 9e-12
Identities = 34/70 (48%), Positives = 47/70 (67%)
Frame = +2
Query: 2 VITFNILVDALCKEGRTNDAFDLLQVMSQRGIIPDVVTYNALIDGLFTSGKGKDAIGLLN 181
V+T+NIL+D+LCK+ N+A D+ M + I PD+ TYN+LI GL + K+A LLN
Sbjct: 235 VVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLN 294
Query: 182 EMTGRGILPN 211
EMT I+PN
Sbjct: 295 EMTSLNIMPN 304
Score = 59.7 bits (143), Expect = 2e-07
Identities = 29/70 (41%), Positives = 42/70 (60%)
Frame = +2
Query: 2 VITFNILVDALCKEGRTNDAFDLLQVMSQRGIIPDVVTYNALIDGLFTSGKGKDAIGLLN 181
+ T+++L+D CKEG AF L +VM + PD+ YN LID + G KDA L +
Sbjct: 445 LFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFS 504
Query: 182 EMTGRGILPN 211
E+ +G+LPN
Sbjct: 505 ELFVQGLLPN 514
Score = 57.8 bits (138), Expect = 9e-07
Identities = 27/70 (38%), Positives = 46/70 (65%)
Frame = +2
Query: 2 VITFNILVDALCKEGRTNDAFDLLQVMSQRGIIPDVVTYNALIDGLFTSGKGKDAIGLLN 181
+ TFN+LVDA+CKEG+ ++A + + M++ G+ PDVVTY++L+ G + +A L +
Sbjct: 305 IFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFD 364
Query: 182 EMTGRGILPN 211
M +G P+
Sbjct: 365 AMITKGCKPD 374
>ref|XP_002308709.1| predicted protein [Populus trichocarpa] gi|222854685|gb|EEE92232.1|
predicted protein [Populus trichocarpa]
Length = 1115
Score = 74.3 bits (181), Expect = 9e-12
Identities = 34/69 (49%), Positives = 48/69 (69%)
Frame = +2
Query: 2 VITFNILVDALCKEGRTNDAFDLLQVMSQRGIIPDVVTYNALIDGLFTSGKGKDAIGLLN 181
V+TF ILV+ALCK GR N+AFDLL M ++G++P++ TYN LI GL + + DA+ L +
Sbjct: 369 VVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFS 428
Query: 182 EMTGRGILP 208
M G+ P
Sbjct: 429 NMESLGVEP 437
Score = 63.5 bits (153), Expect = 2e-08
Identities = 29/68 (42%), Positives = 45/68 (66%)
Frame = +2
Query: 8 TFNILVDALCKEGRTNDAFDLLQVMSQRGIIPDVVTYNALIDGLFTSGKGKDAIGLLNEM 187
++ ILVD LC GR +DA + + Q G+ PD+V YN +I+GL S + ++A+ L +EM
Sbjct: 967 SYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEM 1026
Query: 188 TGRGILPN 211
RGI+P+
Sbjct: 1027 QNRGIVPD 1034
Score = 55.5 bits (132), Expect = 4e-06
Identities = 28/70 (40%), Positives = 38/70 (54%)
Frame = +2
Query: 2 VITFNILVDALCKEGRTNDAFDLLQVMSQRGIIPDVVTYNALIDGLFTSGKGKDAIGLLN 181
VI N L+D L K GR +A+ + M + + P VVTYN L+ GL G+ + A+ L
Sbjct: 544 VIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFE 603
Query: 182 EMTGRGILPN 211
M G G PN
Sbjct: 604 SMNGHGCSPN 613