BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024353
         (594 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI34116.3| unnamed protein product [Vitis vinifera]              192   3e-47
ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containi...   192   3e-47
ref|XP_002525881.1| pentatricopeptide repeat-containing protein,...   180   1e-43
ref|XP_002514422.1| pentatricopeptide repeat-containing protein,...   170   2e-40
ref|XP_004162464.1| PREDICTED: pentatricopeptide repeat-containi...   162   3e-38

>emb|CBI34116.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  192 bits (489), Expect = 3e-47
 Identities = 99/195 (50%), Positives = 135/195 (69%)
 Frame = +3

Query: 3   ILNDMWKKPDDALLFFRQLNDRGFRHDIKCYSALVRILCGSGNRKRLGSLFMELIVSKEK 182
           I  ++  +P+ A  FF QL + GF+H++  Y+AL+R+LC     ++L SL  E++ SKE 
Sbjct: 69  IFYNLKNEPNLAWSFFTQLKESGFQHNVDTYAALIRVLCRWRLERKLQSLLSEIVGSKES 128

Query: 183 HPHFDVYELFEVLGESYGNYEECDKSSPLVRAFDVLVKTYVELGMFDDAINAFFQTERWG 362
              FD+  LF+VL E  G  E  + SS L+   D+LVK YV +GMFD+AI+A FQT+R G
Sbjct: 129 VLGFDITALFDVLREGGGEVEG-EHSSVLILVLDMLVKAYVRVGMFDEAIDALFQTKRRG 187

Query: 363 FVPHVWSCNYIMNCLIDRGKSDTALAFFQQLKRLGLSANAYTYVILIKAYCRRGNVDEAF 542
           FVPH+ SCN++MN LI+ GK D A+A ++ LKRLGL+ N YTY I IKA CR+GN +EA 
Sbjct: 188 FVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAV 247

Query: 543 KVFYDMEEAGVTPSA 587
            VF +MEEAGV P+A
Sbjct: 248 DVFREMEEAGVNPNA 262


>ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial [Vitis vinifera]
          Length = 817

 Score =  192 bits (489), Expect = 3e-47
 Identities = 99/195 (50%), Positives = 135/195 (69%)
 Frame = +3

Query: 3   ILNDMWKKPDDALLFFRQLNDRGFRHDIKCYSALVRILCGSGNRKRLGSLFMELIVSKEK 182
           I  ++  +P+ A  FF QL + GF+H++  Y+AL+R+LC     ++L SL  E++ SKE 
Sbjct: 69  IFYNLKNEPNLAWSFFTQLKESGFQHNVDTYAALIRVLCRWRLERKLQSLLSEIVGSKES 128

Query: 183 HPHFDVYELFEVLGESYGNYEECDKSSPLVRAFDVLVKTYVELGMFDDAINAFFQTERWG 362
              FD+  LF+VL E  G  E  + SS L+   D+LVK YV +GMFD+AI+A FQT+R G
Sbjct: 129 VLGFDITALFDVLREGGGEVEG-EHSSVLILVLDMLVKAYVRVGMFDEAIDALFQTKRRG 187

Query: 363 FVPHVWSCNYIMNCLIDRGKSDTALAFFQQLKRLGLSANAYTYVILIKAYCRRGNVDEAF 542
           FVPH+ SCN++MN LI+ GK D A+A ++ LKRLGL+ N YTY I IKA CR+GN +EA 
Sbjct: 188 FVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAV 247

Query: 543 KVFYDMEEAGVTPSA 587
            VF +MEEAGV P+A
Sbjct: 248 DVFREMEEAGVNPNA 262


>ref|XP_002525881.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534795|gb|EEF36485.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 913

 Score =  180 bits (457), Expect = 1e-43
 Identities = 90/199 (45%), Positives = 130/199 (65%), Gaps = 2/199 (1%)
 Frame = +3

Query: 3   ILNDMWKKPDDALLFFRQLNDRGFRHDIKCYSALVRILCGSGNRKRLGSLFMELIV--SK 176
           IL ++  +P  AL FF QL D GF+HDI  Y+A++RILC  G  K+L S+F+++I     
Sbjct: 72  ILYNLKNQPISALSFFNQLKDSGFKHDISTYAAIIRILCYWGLHKQLRSIFLDIIYVSCN 131

Query: 177 EKHPHFDVYELFEVLGESYGNYEECDKSSPLVRAFDVLVKTYVELGMFDDAINAFFQTER 356
           +    F++    + L + + + +   +S  + + +D LVK YV +GMFDDAI+  FQ  R
Sbjct: 132 DNDTPFEISHFLDTLSDGFVDVDSKKQSLFMSKVYDALVKAYVSVGMFDDAIDVLFQMGR 191

Query: 357 WGFVPHVWSCNYIMNCLIDRGKSDTALAFFQQLKRLGLSANAYTYVILIKAYCRRGNVDE 536
             FVPH++ CN++MN LI   K D ALA ++QLKRLGLS N YTY I+IKA C  G+++E
Sbjct: 192 RRFVPHIFICNFLMNSLIKNSKLDMALAVYKQLKRLGLSPNDYTYAIVIKALCINGSLEE 251

Query: 537 AFKVFYDMEEAGVTPSAFA 593
           A  V  +MEE+G+TP+ FA
Sbjct: 252 AMYVIKEMEESGITPTGFA 270



 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 47/184 (25%), Positives = 75/184 (40%)
 Frame = +3

Query: 24  KPDDALLFFRQLNDRGFRHDIKCYSALVRILCGSGNRKRLGSLFMELIVSKEKHPHFDVY 203
           K D A    R +   G   D+ CY+AL+   C +GN  +  +   E++    K     V 
Sbjct: 318 KFDKAESVLRDMEKEGMVPDMHCYTALICRFCKAGNLLKAYAFLNEMMSKGVKVNCVIVG 377

Query: 204 ELFEVLGESYGNYEECDKSSPLVRAFDVLVKTYVELGMFDDAINAFFQTERWGFVPHVWS 383
            +   L                            ELGM  + ++ F Q +  G      S
Sbjct: 378 SILHCL---------------------------CELGMHSEVVDQFNQFKSLGLFLDGVS 410

Query: 384 CNYIMNCLIDRGKSDTALAFFQQLKRLGLSANAYTYVILIKAYCRRGNVDEAFKVFYDME 563
            N +++ L   GK + A+    ++K   ++ +   Y  LI  YC +GNV +AFKVF +M 
Sbjct: 411 YNNVVDALCKLGKLEEAITLLDEMKMKQINMDVMHYTTLINGYCCQGNVVDAFKVFEEMR 470

Query: 564 EAGV 575
           E G+
Sbjct: 471 ENGI 474


>ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546418|gb|EEF47918.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 809

 Score =  170 bits (430), Expect = 2e-40
 Identities = 87/196 (44%), Positives = 124/196 (63%)
 Frame = +3

Query: 6   LNDMWKKPDDALLFFRQLNDRGFRHDIKCYSALVRILCGSGNRKRLGSLFMELIVSKEKH 185
           LN++  +P  A  +F QL + G+ HD   Y+A+VRILC  G  ++L S+ ME I+ K+ +
Sbjct: 66  LNNLRNEPSLAFSYFNQLKESGYSHDPYTYAAIVRILCFWGWSRKLDSILME-IIKKDGN 124

Query: 186 PHFDVYELFEVLGESYGNYEECDKSSPLVRAFDVLVKTYVELGMFDDAINAFFQTERWGF 365
             F +  LFE LG+   N    +  S LV+  D L+K  V  GMFD A +   QT+  GF
Sbjct: 125 LDFGIVNLFEALGDGIAN----ESFSVLVQVSDALIKVCVASGMFDQAFDVLLQTKHCGF 180

Query: 366 VPHVWSCNYIMNCLIDRGKSDTALAFFQQLKRLGLSANAYTYVILIKAYCRRGNVDEAFK 545
            P + SCN++MN L++  K D A+A ++QLK  GL+ N YTY I IK +CR+GN+ EA  
Sbjct: 181 APQILSCNFLMNRLVESRKVDMAIAIYRQLKAFGLNPNDYTYTIAIKGFCRKGNLAEAID 240

Query: 546 VFYDMEEAGVTPSAFA 593
           VF DMEE+GVTP++F+
Sbjct: 241 VFRDMEESGVTPNSFS 256


>ref|XP_004162464.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial-like [Cucumis sativus]
          Length = 795

 Score =  162 bits (411), Expect = 3e-38
 Identities = 79/197 (40%), Positives = 123/197 (62%)
 Frame = +3

Query: 3   ILNDMWKKPDDALLFFRQLNDRGFRHDIKCYSALVRILCGSGNRKRLGSLFMELIVSKEK 182
           +L  + ++P  A  FF +L +RGF+H+I  Y+AL+RILC  G  ++L +LF+ LI SK+ 
Sbjct: 65  VLESLRREPKIAFSFFCELEERGFQHNISTYAALIRILCSWGLGRKLETLFLNLIGSKKV 124

Query: 183 HPHFDVYELFEVLGESYGNYEECDKSSPLVRAFDVLVKTYVELGMFDDAINAFFQTERWG 362
              FDV +L E L +       C   +  +R +D L+K YV + +FD  ++  F+  R G
Sbjct: 125 E--FDVLDLIESLNQG------CVVDASFIRVYDALIKAYVSVNLFDSVVDLLFRLGRKG 176

Query: 363 FVPHVWSCNYIMNCLIDRGKSDTALAFFQQLKRLGLSANAYTYVILIKAYCRRGNVDEAF 542
           FVPH+++CNY++N LI+ GK + AL  ++QLKR G   N YTY  +IK  C+ G +++A 
Sbjct: 177 FVPHIFTCNYLLNRLIEHGKMNMALVVYEQLKRFGCQPNDYTYATVIKGLCKIGKMEKAI 236

Query: 543 KVFYDMEEAGVTPSAFA 593
            +F +M   G+ P+AFA
Sbjct: 237 DIFEEMSGYGMVPNAFA 253