BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024346
         (1558 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002332188.1| predicted protein [Populus trichocarpa] gi|2...   587   e-165
ref|XP_003546633.1| PREDICTED: DNA repair protein recA homolog 1...   581   e-163
ref|XP_002271727.1| PREDICTED: DNA repair protein recA homolog 1...   579   e-163
emb|CBI21810.3| unnamed protein product [Vitis vinifera]              578   e-162
ref|XP_003562018.1| PREDICTED: DNA repair protein recA homolog 1...   577   e-162

>ref|XP_002332188.1| predicted protein [Populus trichocarpa] gi|222875295|gb|EEF12426.1|
            predicted protein [Populus trichocarpa]
          Length = 387

 Score =  587 bits (1512), Expect = e-165
 Identities = 299/376 (79%), Positives = 326/376 (86%), Gaps = 5/376 (1%)
 Frame = +3

Query: 93   PLQFPVTRLSFSSDRQTSKTQHASKTRSEF----NGS-LSDDFDSRFTDRQKALEAAMND 257
            PL F  +R+ F +    +  +   + R EF    NGS LS D D+RF D+QKALEAAMND
Sbjct: 6    PLYFQFSRVCFKTSHFAAVKKKPKEIRCEFDSKVNGSPLSSDLDARFLDKQKALEAAMND 65

Query: 258  INNSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEVYGPESSGKTTLAL 437
            INNSFGKGSVTRLGSAGGALVETFPSGCLTLD ALGGGLPKGRIVE++GPESSGKTTLAL
Sbjct: 66   INNSFGKGSVTRLGSAGGALVETFPSGCLTLDFALGGGLPKGRIVEIFGPESSGKTTLAL 125

Query: 438  HAIAEVQRLGGNAMLVDAEHAFDPAYSKDLGVDIENLIVCQPDNGEMALETADRMCRSGA 617
            HAIAEVQ+ GG+AMLVDAEHAFDPAYSK LGVD+ENLIVCQPDNGEMALE ADRMCRSGA
Sbjct: 126  HAIAEVQKFGGHAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGA 185

Query: 618  VDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLMFLNQIRY 797
            VDLICVDSVSALTPRAEIEGEIGMQQ+GLQARLMSQALRKMSGNASKAGCTL+FLNQIRY
Sbjct: 186  VDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRY 245

Query: 798  KIGVFYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDIGLXXXXXXXXXXXXXPY 977
            KIGV+YGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDED+G+             PY
Sbjct: 246  KIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDVGVRVRVRVQKSKVSRPY 305

Query: 978  KQAEFDIVFGQGVSQLGCILDCAETMDLIVKKGSWYSYEEHRLGQGRDKALQHLRENPLL 1157
            KQAEF+I+FG+GVSQLGCILDCAE MD++VKKGSWYSY +HRLGQGRDKALQ+LR+NP L
Sbjct: 306  KQAEFEIIFGEGVSQLGCILDCAEMMDVVVKKGSWYSYGDHRLGQGRDKALQYLRDNPHL 365

Query: 1158 CSEIEKVVRSKIADAT 1205
              EIEK VRS + D T
Sbjct: 366  QEEIEKKVRSTMTDGT 381


>ref|XP_003546633.1| PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like
            [Glycine max]
          Length = 414

 Score =  581 bits (1498), Expect = e-163
 Identities = 299/394 (75%), Positives = 329/394 (83%), Gaps = 3/394 (0%)
 Frame = +3

Query: 45   LKPHCFFFYLKTSAKQPLQFPVTRLSFSSDRQTSKTQHAS---KTRSEFNGSLSDDFDSR 215
            LKPHC    LK      L FP   L F   R  +  +HA+   +     NG+LS DFD R
Sbjct: 7    LKPHCVI--LKAPLSSSLLFPFP-LRF---RAVTAFKHANIQCELEGRPNGALSGDFDPR 60

Query: 216  FTDRQKALEAAMNDINNSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVE 395
            F DRQKALEAAMNDINN+FGKGSVTRLGSAGGALVETFPSGCLTLD ALGGGLPKGRI+E
Sbjct: 61   FIDRQKALEAAMNDINNNFGKGSVTRLGSAGGALVETFPSGCLTLDCALGGGLPKGRIIE 120

Query: 396  VYGPESSGKTTLALHAIAEVQRLGGNAMLVDAEHAFDPAYSKDLGVDIENLIVCQPDNGE 575
            +YGPESSGKTTLALHAIAEVQ+LGGNAMLVDAEHAFDPAYSK LGVD+ENLIVCQPD+GE
Sbjct: 121  IYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDHGE 180

Query: 576  MALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNAS 755
            MALE ADRMCRSGA+DLICVDSVSALTPRAEIEGEIGMQQ+GLQARLMSQALRKMSGNAS
Sbjct: 181  MALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNAS 240

Query: 756  KAGCTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDIGLX 935
            KAGCTL+FLNQIRYKIGV+YGNPEVTSGGIALKFFAS+RLE+R TGKIKS KGDE+IGL 
Sbjct: 241  KAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEVRPTGKIKSAKGDEEIGLK 300

Query: 936  XXXXXXXXXXXXPYKQAEFDIVFGQGVSQLGCILDCAETMDLIVKKGSWYSYEEHRLGQG 1115
                        PYK AEF+I+FG+G+S+LGCILDCAE  D++ KKGSWYSY +HRLGQG
Sbjct: 301  VRLRVQKSKVSRPYKIAEFEIIFGEGISKLGCILDCAEMTDIVSKKGSWYSYGDHRLGQG 360

Query: 1116 RDKALQHLRENPLLCSEIEKVVRSKIADATKQAS 1217
            RDKA+Q+L+EN  L  EIEKVVRS + D T Q S
Sbjct: 361  RDKAIQYLKENTHLLEEIEKVVRSSLIDGTNQTS 394


>ref|XP_002271727.1| PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like
            [Vitis vinifera]
          Length = 415

 Score =  579 bits (1493), Expect = e-163
 Identities = 298/391 (76%), Positives = 328/391 (83%)
 Frame = +3

Query: 66   FYLKTSAKQPLQFPVTRLSFSSDRQTSKTQHASKTRSEFNGSLSDDFDSRFTDRQKALEA 245
            F LKT    P  FP + L      +  + +   +   + NG+LS D D RF DRQKALEA
Sbjct: 13   FPLKTLL--PSAFPSSSLPPHMGAKRQQMRLRCEFEVKVNGALSSDPDPRFLDRQKALEA 70

Query: 246  AMNDINNSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEVYGPESSGKT 425
            AMNDIN+SFGKGSVTRLGSAGGALVETFPSGCLTLD ALGGGLPKGRIVE+YGPESSGKT
Sbjct: 71   AMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDFALGGGLPKGRIVEIYGPESSGKT 130

Query: 426  TLALHAIAEVQRLGGNAMLVDAEHAFDPAYSKDLGVDIENLIVCQPDNGEMALETADRMC 605
            TLALHAIAEVQ+LGGNAMLVDAEHAFDPAYSK LGVD+ENLIVCQPD+GEMALE ADRMC
Sbjct: 131  TLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDHGEMALEIADRMC 190

Query: 606  RSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLMFLN 785
            RSGA+DLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTL+FLN
Sbjct: 191  RSGAIDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLN 250

Query: 786  QIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDIGLXXXXXXXXXXX 965
            QIRYKIGV+YGNPEVTSGGIALKFFAS+RLEIR  GKIKS KGDEDIGL           
Sbjct: 251  QIRYKIGVYYGNPEVTSGGIALKFFASLRLEIRPIGKIKSSKGDEDIGLRVRVRVQKSKV 310

Query: 966  XXPYKQAEFDIVFGQGVSQLGCILDCAETMDLIVKKGSWYSYEEHRLGQGRDKALQHLRE 1145
              PYKQAEF+I+FG+GVS+LGCILDCAE MD++VKKGSWYSY ++RLGQGRD+ALQ+LRE
Sbjct: 311  SRPYKQAEFEIIFGEGVSKLGCILDCAELMDVVVKKGSWYSYGDNRLGQGRDRALQYLRE 370

Query: 1146 NPLLCSEIEKVVRSKIADATKQASLTQSRPS 1238
            NPL+C EIEK+VR  +A+   Q      R S
Sbjct: 371  NPLVCHEIEKIVRPMMAEGIGQLGAPHVRLS 401


>emb|CBI21810.3| unnamed protein product [Vitis vinifera]
          Length = 384

 Score =  578 bits (1490), Expect = e-162
 Identities = 293/362 (80%), Positives = 318/362 (87%), Gaps = 4/362 (1%)
 Frame = +3

Query: 165  KTRSEF----NGSLSDDFDSRFTDRQKALEAAMNDINNSFGKGSVTRLGSAGGALVETFP 332
            + R EF    NG+LS D D RF DRQKALEAAMNDIN+SFGKGSVTRLGSAGGALVETFP
Sbjct: 9    RLRCEFEVKVNGALSSDPDPRFLDRQKALEAAMNDINSSFGKGSVTRLGSAGGALVETFP 68

Query: 333  SGCLTLDLALGGGLPKGRIVEVYGPESSGKTTLALHAIAEVQRLGGNAMLVDAEHAFDPA 512
            SGCLTLD ALGGGLPKGRIVE+YGPESSGKTTLALHAIAEVQ+LGGNAMLVDAEHAFDPA
Sbjct: 69   SGCLTLDFALGGGLPKGRIVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPA 128

Query: 513  YSKDLGVDIENLIVCQPDNGEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQ 692
            YSK LGVD+ENLIVCQPD+GEMALE ADRMCRSGA+DLICVDSVSALTPRAEIEGEIGMQ
Sbjct: 129  YSKALGVDVENLIVCQPDHGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQ 188

Query: 693  QMGLQARLMSQALRKMSGNASKAGCTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVR 872
            QMGLQARLMSQALRKMSGNASKAGCTL+FLNQIRYKIGV+YGNPEVTSGGIALKFFAS+R
Sbjct: 189  QMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLR 248

Query: 873  LEIRSTGKIKSVKGDEDIGLXXXXXXXXXXXXXPYKQAEFDIVFGQGVSQLGCILDCAET 1052
            LEIR  GKIKS KGDEDIGL             PYKQAEF+I+FG+GVS+LGCILDCAE 
Sbjct: 249  LEIRPIGKIKSSKGDEDIGLRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCILDCAEL 308

Query: 1053 MDLIVKKGSWYSYEEHRLGQGRDKALQHLRENPLLCSEIEKVVRSKIADATKQASLTQSR 1232
            MD++VKKGSWYSY ++RLGQGRD+ALQ+LRENPL+C EIEK+VR  +A+   Q      R
Sbjct: 309  MDVVVKKGSWYSYGDNRLGQGRDRALQYLRENPLVCHEIEKIVRPMMAEGIGQLGAPHVR 368

Query: 1233 PS 1238
             S
Sbjct: 369  LS 370


>ref|XP_003562018.1| PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like
            isoform 1 [Brachypodium distachyon]
          Length = 412

 Score =  577 bits (1487), Expect = e-162
 Identities = 291/377 (77%), Positives = 322/377 (85%), Gaps = 5/377 (1%)
 Frame = +3

Query: 105  PVTRLSFSSDRQTSKTQHASKTRSEF-----NGSLSDDFDSRFTDRQKALEAAMNDINNS 269
            P  R+S +    +  T    + R EF     NG+LS + D R  DRQKAL+AAMNDINNS
Sbjct: 18   PRRRVSATRASASGTTGRGRRLRCEFVASVGNGALSGEDDPRLIDRQKALDAAMNDINNS 77

Query: 270  FGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEVYGPESSGKTTLALHAIA 449
            FGKGSVTRLGSAGGA VETFPSGCLTLD ALGGGLPKGR+VEVYGPESSGKTTLALHAIA
Sbjct: 78   FGKGSVTRLGSAGGAFVETFPSGCLTLDFALGGGLPKGRVVEVYGPESSGKTTLALHAIA 137

Query: 450  EVQRLGGNAMLVDAEHAFDPAYSKDLGVDIENLIVCQPDNGEMALETADRMCRSGAVDLI 629
            E+Q+LGGNAMLVDAEHAFDPAYSK LGVDIENLIVCQPDNGEMALE ADRMCRSGA+DLI
Sbjct: 138  EIQKLGGNAMLVDAEHAFDPAYSKALGVDIENLIVCQPDNGEMALEIADRMCRSGAIDLI 197

Query: 630  CVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLMFLNQIRYKIGV 809
            C+DSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLMFLNQIRYKIGV
Sbjct: 198  CIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLMFLNQIRYKIGV 257

Query: 810  FYGNPEVTSGGIALKFFASVRLEIRSTGKIKSVKGDEDIGLXXXXXXXXXXXXXPYKQAE 989
            FYGNPEVTSGGIALKFFASVRLEIR  GKIKS KGDED+G+             PYKQAE
Sbjct: 258  FYGNPEVTSGGIALKFFASVRLEIRHIGKIKSAKGDEDVGVKVRVRVQKSKVSRPYKQAE 317

Query: 990  FDIVFGQGVSQLGCILDCAETMDLIVKKGSWYSYEEHRLGQGRDKALQHLRENPLLCSEI 1169
            F+I+FG+GVS+LGCILDCAE M+++ KKGSWYSY++ RLGQGR+KALQ+LRE+P +C EI
Sbjct: 318  FEIMFGEGVSKLGCILDCAELMEVVAKKGSWYSYKDIRLGQGREKALQYLRESPTICDEI 377

Query: 1170 EKVVRSKIADATKQASL 1220
            EKVVR+ I + T+  +L
Sbjct: 378  EKVVRAMIPEGTRHMTL 394