BLASTX nr result

ID: Coptis24_contig00024340 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024340
         (249 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269262.1| PREDICTED: uncharacterized protein LOC100255...    64   2e-08
emb|CAN63978.1| hypothetical protein VITISV_006526 [Vitis vinifera]    64   2e-08
ref|XP_002324697.1| predicted protein [Populus trichocarpa] gi|2...    54   1e-05

>ref|XP_002269262.1| PREDICTED: uncharacterized protein LOC100255532 [Vitis vinifera]
           gi|296090285|emb|CBI40104.3| unnamed protein product
           [Vitis vinifera]
          Length = 290

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 32/46 (69%), Positives = 37/46 (80%)
 Frame = -3

Query: 139 AGFPTSPNGDIKMMFPIMCPAFVPGLIPMQNQEQQTNLGTGLYAVP 2
           +GFP SPNG+I+M FPIM PA VPGLI +QNQE Q N G G+YAVP
Sbjct: 29  SGFPVSPNGNIQM-FPIMYPALVPGLISLQNQE-QVNRGAGIYAVP 72


>emb|CAN63978.1| hypothetical protein VITISV_006526 [Vitis vinifera]
          Length = 172

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 32/46 (69%), Positives = 37/46 (80%)
 Frame = -3

Query: 139 AGFPTSPNGDIKMMFPIMCPAFVPGLIPMQNQEQQTNLGTGLYAVP 2
           +GFP SPNG+I+M FPIM PA VPGLI +QNQE Q N G G+YAVP
Sbjct: 73  SGFPVSPNGNIQM-FPIMYPALVPGLISLQNQE-QVNRGAGIYAVP 116


>ref|XP_002324697.1| predicted protein [Populus trichocarpa] gi|222866131|gb|EEF03262.1|
           predicted protein [Populus trichocarpa]
          Length = 290

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 28/46 (60%), Positives = 33/46 (71%)
 Frame = -3

Query: 139 AGFPTSPNGDIKMMFPIMCPAFVPGLIPMQNQEQQTNLGTGLYAVP 2
           +GFP  P+G  +M FP+M PA VPGL  MQNQE Q N G G+YAVP
Sbjct: 36  SGFPAYPDGGFQM-FPVMYPALVPGLNAMQNQE-QANHGPGIYAVP 79


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