BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024329
         (920 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270098.1| PREDICTED: putative SWI/SNF-related matrix-a...   337   2e-90
emb|CBI17093.3| unnamed protein product [Vitis vinifera]              333   3e-89
ref|XP_002527439.1| DNA repair helicase rad5,16, putative [Ricin...   331   2e-88
ref|XP_003632276.1| PREDICTED: putative SWI/SNF-related matrix-a...   330   2e-88
ref|NP_197667.1| DNA/RNA helicase protein RAD5 [Arabidopsis thal...   321   1e-85

>ref|XP_002270098.1| PREDICTED: putative SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 3-like 2-like isoform 2 [Vitis vinifera]
          Length = 1016

 Score =  337 bits (865), Expect = 2e-90
 Identities = 177/307 (57%), Positives = 224/307 (72%), Gaps = 8/307 (2%)
 Frame = +3

Query: 24  KVKDEMINTIRSIIGQEYSEMDIIRALHMSNNDITAAINIIFDTPNYSKKPQPRKLEKNE 203
           KV DE+++T+RS+IG  YS+MDIIRALHM+NND+TAAINIIFDTPN+  K          
Sbjct: 4   KVTDELLSTVRSVIGLNYSDMDIIRALHMANNDVTAAINIIFDTPNFGTKMGKNTETFRR 63

Query: 204 VVSKLDSRVVSTSSSVPDVNE-----SVCENGEDSEWWFVGSSEVSCLSTCKGRKLKGGD 368
             S + + VVS S    D  +     S C     SEWWF+  SE++ LSTCKGR++K GD
Sbjct: 64  NSSSVSAIVVSDSYRNEDETKNFEASSRCSGSIGSEWWFLNCSELAGLSTCKGRRMKSGD 123

Query: 369 EVVFSFPVKNSGNKFVGGR---GGRSPSACSEIVRFSTKEAGEIGRIPNEWARCLLPLVK 539
           EV F+FP+K S N    G+    GR   ACSEIVRFSTKE+GE+GRIPNEWARCLLPLV+
Sbjct: 124 EVFFTFPLKKSPNSPSPGKLTGRGRQMGACSEIVRFSTKESGEVGRIPNEWARCLLPLVR 183

Query: 540 DKKIRVEGQCKYAPDVLGIMDTVVLLVSVYINSSMFRKFHKTSIKSANSVNEESVVHPLP 719
           DKK+++EG CK APDVLGIMDT++L +SVYINSSMFRK  +TS+++A++ +EESVVH LP
Sbjct: 184 DKKVKIEGFCKAAPDVLGIMDTILLSISVYINSSMFRKCQQTSLRAASNSSEESVVHALP 243

Query: 720 TLFKLLGMTAFKKAEVTPEDLYTRKRPLGLKEDSGINASLLHICNSKKPMTQESKDDNEQ 899
           TLF+LLG+T FKKAE +P+DLYTRKRPL  K++SGI   L H+   K P    ++ +NE 
Sbjct: 244 TLFRLLGLTPFKKAEFSPDDLYTRKRPLESKDNSGIPGLLSHV-KFKNPSPNGNEVENE- 301

Query: 900 EPISDAE 920
           E ISD +
Sbjct: 302 ESISDTD 308


>emb|CBI17093.3| unnamed protein product [Vitis vinifera]
          Length = 1025

 Score =  333 bits (854), Expect = 3e-89
 Identities = 179/321 (55%), Positives = 229/321 (71%), Gaps = 22/321 (6%)
 Frame = +3

Query: 24  KVKDEMINTIRSIIGQEYSEMDIIRALHMSNNDITAAINIIFDTPNYSKKPQPRKLEKNE 203
           KV DE+++T+RS+IG  YS+MDIIRALHM+NND+TAAINIIFDTPN+  K     + KN 
Sbjct: 4   KVTDELLSTVRSVIGLNYSDMDIIRALHMANNDVTAAINIIFDTPNFGTK-----MGKNT 58

Query: 204 VVSKLDSRVVS----------------TSSSVPDVN---ESVCENGEDSEWWFVGSSEVS 326
              + +S  VS                T S++ D +    S C     SEWWF+  SE++
Sbjct: 59  ETFRRNSSSVSAIAKKCSLGSNENDTPTPSNLVDNSFEASSRCSGSIGSEWWFLNCSELA 118

Query: 327 CLSTCKGRKLKGGDEVVFSFPVKNSGNKFVGGR---GGRSPSACSEIVRFSTKEAGEIGR 497
            LSTCKGR++K GDEV F+FP+K S N    G+    GR   ACSEIVRFSTKE+GE+GR
Sbjct: 119 GLSTCKGRRMKSGDEVFFTFPLKKSPNSPSPGKLTGRGRQMGACSEIVRFSTKESGEVGR 178

Query: 498 IPNEWARCLLPLVKDKKIRVEGQCKYAPDVLGIMDTVVLLVSVYINSSMFRKFHKTSIKS 677
           IPNEWARCLLPLV+DKK+++EG CK APDVLGIMDT++L +SVYINSSMFRK  +TS+++
Sbjct: 179 IPNEWARCLLPLVRDKKVKIEGFCKAAPDVLGIMDTILLSISVYINSSMFRKCQQTSLRA 238

Query: 678 ANSVNEESVVHPLPTLFKLLGMTAFKKAEVTPEDLYTRKRPLGLKEDSGINASLLHICNS 857
           A++ +EESVVH LPTLF+LLG+T FKKAE +P+DLYTRKRPL  K++SGI   L H+   
Sbjct: 239 ASNSSEESVVHALPTLFRLLGLTPFKKAEFSPDDLYTRKRPLESKDNSGIPGLLSHV-KF 297

Query: 858 KKPMTQESKDDNEQEPISDAE 920
           K P    ++ +NE E ISD +
Sbjct: 298 KNPSPNGNEVENE-ESISDTD 317


>ref|XP_002527439.1| DNA repair helicase rad5,16, putative [Ricinus communis]
           gi|223533174|gb|EEF34931.1| DNA repair helicase rad5,16,
           putative [Ricinus communis]
          Length = 1028

 Score =  331 bits (848), Expect = 2e-88
 Identities = 170/319 (53%), Positives = 224/319 (70%), Gaps = 19/319 (5%)
 Frame = +3

Query: 21  NKVKDEMINTIRSIIGQEYSEMDIIRALHMSNNDITAAINIIFDTPNYSKKPQPRKLEKN 200
           NK+ DE++ T+RSI+G E+S+MDIIRALH+S ND +AAINIIFDTPN++ K +P+   K 
Sbjct: 3   NKMTDELLTTVRSIVGPEFSDMDIIRALHLSKNDPSAAINIIFDTPNFNSKLKPQTPYKT 62

Query: 201 EVVSKLDSRVVSTSSSVPDVNESV-------------CENGEDSEWWFVGSSEVSCLSTC 341
            ++   +S        V   NE+              C N   SEWW+ GS +V+ LST 
Sbjct: 63  PILENPNSNPTKEPKLVSKENENRNISVHNSDNIEDNCINENGSEWWYAGSGDVAGLSTS 122

Query: 342 KGRKLKGGDEVVFSFPVKNSGNKFVGGRG-----GRSPS-ACSEIVRFSTKEAGEIGRIP 503
           KGRKLK GD V+F+FP+K+S       +G     GR P+ ACSEIVRFST+++GE+GRIP
Sbjct: 123 KGRKLKAGDGVIFTFPLKSSNTSNSPSQGKAFGKGRQPATACSEIVRFSTRDSGEVGRIP 182

Query: 504 NEWARCLLPLVKDKKIRVEGQCKYAPDVLGIMDTVVLLVSVYINSSMFRKFHKTSIKSAN 683
           NEWARCLLPLV+ KK+R+EG CK APD+LGIMDT++L +SVYINS++FR   +TS+K+ +
Sbjct: 183 NEWARCLLPLVRYKKVRIEGYCKSAPDILGIMDTILLSISVYINSALFRMHQQTSLKAVS 242

Query: 684 SVNEESVVHPLPTLFKLLGMTAFKKAEVTPEDLYTRKRPLGLKEDSGINASLLHICNSKK 863
           +  EE++VHPLP LF+LLG+T FKKAE TP DLYTRKRPL  K+ SGI A LLH+  SK 
Sbjct: 243 NPTEETIVHPLPNLFRLLGLTPFKKAEFTPADLYTRKRPLNSKDGSGIPALLLHVNKSKN 302

Query: 864 PMTQESKDDNEQEPISDAE 920
                S+ +NE + ISD +
Sbjct: 303 QSKDGSEVENE-DSISDTD 320


>ref|XP_003632276.1| PREDICTED: putative SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 3-like 2-like [Vitis vinifera]
          Length = 1029

 Score =  330 bits (847), Expect = 2e-88
 Identities = 178/325 (54%), Positives = 229/325 (70%), Gaps = 26/325 (8%)
 Frame = +3

Query: 24  KVKDEMINTIRSIIGQEYSEMDIIRALHMSNNDITAAINIIFDTPNYSKKPQPRKLEKNE 203
           KV DE+++T+RS+IG  YS+MDIIRALHM+NND+TAAINIIFDTPN+  K     + KN 
Sbjct: 4   KVTDELLSTVRSVIGLNYSDMDIIRALHMANNDVTAAINIIFDTPNFGTK-----MGKNT 58

Query: 204 VVSKLDSRVVS--------------------TSSSVPDVN---ESVCENGEDSEWWFVGS 314
              + +S  V+                    T S++ D +    S C     SEWWF+  
Sbjct: 59  ETFRRNSSSVNSNRNNEAKKCSLGSNENDTPTPSNLVDNSFEASSRCSGSIGSEWWFLNC 118

Query: 315 SEVSCLSTCKGRKLKGGDEVVFSFPVKNSGNKFVGGR---GGRSPSACSEIVRFSTKEAG 485
           SE++ LSTCKGR++K GDEV F+FP+K S N    G+    GR   ACSEIVRFSTKE+G
Sbjct: 119 SELAGLSTCKGRRMKSGDEVFFTFPLKKSPNSPSPGKLTGRGRQMGACSEIVRFSTKESG 178

Query: 486 EIGRIPNEWARCLLPLVKDKKIRVEGQCKYAPDVLGIMDTVVLLVSVYINSSMFRKFHKT 665
           E+GRIPNEWARCLLPLV+DKK+++EG CK APDVLGIMDT++L +SVYINSSMFRK  +T
Sbjct: 179 EVGRIPNEWARCLLPLVRDKKVKIEGFCKAAPDVLGIMDTILLSISVYINSSMFRKCQQT 238

Query: 666 SIKSANSVNEESVVHPLPTLFKLLGMTAFKKAEVTPEDLYTRKRPLGLKEDSGINASLLH 845
           S+++A++ +EESVVH LPTLF+LLG+T FKKAE +P+DLYTRKRPL  K++SGI   L H
Sbjct: 239 SLRAASNSSEESVVHALPTLFRLLGLTPFKKAEFSPDDLYTRKRPLESKDNSGIPGLLSH 298

Query: 846 ICNSKKPMTQESKDDNEQEPISDAE 920
           +   K P    ++ +NE E ISD +
Sbjct: 299 V-KFKNPSPNGNEVENE-ESISDTD 321


>ref|NP_197667.1| DNA/RNA helicase protein RAD5 [Arabidopsis thaliana]
           gi|60390961|sp|Q9FNI6.1|SM3L2_ARATH RecName:
           Full=Putative SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 3-like 2; Short=SMARCA3-like protein 2
           gi|10178249|dbj|BAB11681.1| DNA repair protein RAD5
           protein [Arabidopsis thaliana]
           gi|110737306|dbj|BAF00599.1| hypothetical protein
           [Arabidopsis thaliana] gi|332005687|gb|AED93070.1|
           DNA/RNA helicase protein RAD5 [Arabidopsis thaliana]
          Length = 1029

 Score =  321 bits (823), Expect = 1e-85
 Identities = 173/320 (54%), Positives = 222/320 (69%), Gaps = 21/320 (6%)
 Frame = +3

Query: 24  KVKDEMINTIRSIIGQEYSEMDIIRALHMSNNDITAAINIIFDTPNYSKK----PQPRKL 191
           KV D++++T+RS++G +YS+MDIIRALHM+N+D TAAINIIFDTP+++K     P P   
Sbjct: 4   KVSDDLVSTVRSVVGSDYSDMDIIRALHMANHDPTAAINIIFDTPSFAKPDVATPTPSGS 63

Query: 192 EKNEVVSKL-------DSRVVSTSSSVPDVNESVCENGEDS----EWWFVGSSEVSCLST 338
              + V          DS  V  +  V + NESV   GE+S    EWWFVG SE++ LST
Sbjct: 64  NGGKRVDSGLKGCTFGDSGSVGANHRVEEENESVNGGGEESVSGNEWWFVGCSELAGLST 123

Query: 339 CKGRKLKGGDEVVFSFP------VKNSGNKFVGGRGGRSPSACSEIVRFSTKEAGEIGRI 500
           CKGRKLK GDE+VF+FP       + +  K   GRG  +    S+IVRFSTK++GEIGRI
Sbjct: 124 CKGRKLKSGDELVFTFPHSKGLKPETTPGKRGFGRGRPALRGASDIVRFSTKDSGEIGRI 183

Query: 501 PNEWARCLLPLVKDKKIRVEGQCKYAPDVLGIMDTVVLLVSVYINSSMFRKFHKTSIKSA 680
           PNEWARCLLPLV+DKKIR+EG CK AP+ L IMDT++L VSVYINSSMF+K   TS K+A
Sbjct: 184 PNEWARCLLPLVRDKKIRIEGSCKSAPEALSIMDTILLSVSVYINSSMFQKHSATSFKTA 243

Query: 681 NSVNEESVVHPLPTLFKLLGMTAFKKAEVTPEDLYTRKRPLGLKEDSGINASLLHICNSK 860
           ++  EES+ HPLP LF+LLG+  FKKAE TPED Y++KRPL  K+ S I  SLL + N  
Sbjct: 244 SNTAEESMFHPLPNLFRLLGLIPFKKAEFTPEDFYSKKRPLSSKDGSAIPTSLLQL-NKV 302

Query: 861 KPMTQESKDDNEQEPISDAE 920
           K M Q++  D  ++ ISD +
Sbjct: 303 KNMNQDANGDENEQCISDGD 322