BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024322
         (862 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278999.1| PREDICTED: pentatricopeptide repeat-containi...   273   3e-71
emb|CAN63553.1| hypothetical protein VITISV_003195 [Vitis vinifera]   270   3e-70
ref|XP_003552628.1| PREDICTED: pentatricopeptide repeat-containi...   265   1e-68
ref|XP_002329308.1| predicted protein [Populus trichocarpa] gi|2...   258   1e-66
ref|XP_002305302.1| predicted protein [Populus trichocarpa] gi|2...   255   1e-65

>ref|XP_002278999.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
            mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  273 bits (699), Expect = 3e-71
 Identities = 145/289 (50%), Positives = 197/289 (68%), Gaps = 2/289 (0%)
 Frame = -1

Query: 862  LYEYKMGSATKPPVQDGVSLFRNVVKWGRNLDMRLFSKVVETFTEGGYSLTTSILDEVVK 683
            LYE+ M  A KP + D   L R +V   + LD+ LFS+VV T+TEGG  LT S+LD ++K
Sbjct: 340  LYEFAMSGANKPSMYDCTFLLRKIVV-SKVLDISLFSRVVRTYTEGGNILTKSMLDAILK 398

Query: 682  SLISVEKVKECDKILKAMEKGGCIPSSELYNKIIYHLATVG--GEAVLMMSEMKASGHIP 509
            SL SV +  EC+K+LKAME+GG +  S + NKI + L++     EA   M+ M+ S   P
Sbjct: 399  SLTSVGRFGECNKLLKAMEEGGYVVGSGMQNKIAFGLSSARKTDEANEFMNNMEDSDCRP 458

Query: 508  DSKTWTSLIFGQCIAGDVKKASNSVRTMVKNFGITDAGPAFEEVVNGFCQQRKTTEAYKF 329
            + +TW+SLI G C+AGD+ KAS+  + MV+  G++ AG AFE +VN +C + ++ +A   
Sbjct: 459  NYRTWSSLIEGYCVAGDLDKASDCFQKMVEKEGVSYAGYAFEVLVNAYCCKGRSVDACGL 518

Query: 328  LFKTVREHHFKPQHSTYKMLIWKLLAEGRFNEALILLGLMNGHGFSPFLDPFIDHISKSG 149
            L     +  FKP HSTYK+LI KLL +G F  AL LLGLM  H F PFLDPFI+++S++G
Sbjct: 519  LCDLASKEKFKPWHSTYKLLISKLLVQGGFQAALNLLGLMKDHEFPPFLDPFIEYVSRTG 578

Query: 148  SGDDAISFLNAVTDKKFPSTSVVLRMIEAFLKVGRHSEARDCFSKCPSY 2
            +GDDAI+FL A+T K+FPSTSV L+  EAF K GRH+EA+D  SKCP Y
Sbjct: 579  TGDDAITFLRAMTVKRFPSTSVFLQTFEAFFKAGRHNEAQDFLSKCPGY 627


>emb|CAN63553.1| hypothetical protein VITISV_003195 [Vitis vinifera]
          Length = 650

 Score =  270 bits (690), Expect = 3e-70
 Identities = 144/289 (49%), Positives = 195/289 (67%), Gaps = 2/289 (0%)
 Frame = -1

Query: 862  LYEYKMGSATKPPVQDGVSLFRNVVKWGRNLDMRLFSKVVETFTEGGYSLTTSILDEVVK 683
            LYE+ M  A KP + D   L R +V   + LD+ LFS+VV T+TEGG  LT S+LD  +K
Sbjct: 340  LYEFAMSGANKPSMYDCTFLLRKIVV-SKVLDISLFSRVVRTYTEGGNILTKSMLDAXLK 398

Query: 682  SLISVEKVKECDKILKAMEKGGCIPSSELYNKIIYHLATVG--GEAVLMMSEMKASGHIP 509
            SL SV +  EC+K+LKAME+GG +  S + NKI + L++     EA   M+ M+ S   P
Sbjct: 399  SLTSVGRFGECNKLLKAMEEGGYVVGSGMQNKIAFGLSSARKTDEANEFMNNMEDSDCRP 458

Query: 508  DSKTWTSLIFGQCIAGDVKKASNSVRTMVKNFGITDAGPAFEEVVNGFCQQRKTTEAYKF 329
            + +TW+SLI G C+AGD+ KAS+  + MV+  G++  G AFE +VN +C + ++ +A   
Sbjct: 459  NYRTWSSLIEGYCVAGDLDKASDCFQKMVEKEGVSYXGYAFEVLVNAYCCKGRSVDACGL 518

Query: 328  LFKTVREHHFKPQHSTYKMLIWKLLAEGRFNEALILLGLMNGHGFSPFLDPFIDHISKSG 149
            L     +  FKP HSTYK+LI KLL +G F  AL LLGLM  H F PFLDPFI+++S++G
Sbjct: 519  LCDLASKEKFKPWHSTYKLLISKLLVQGGFQAALNLLGLMKDHEFPPFLDPFIEYVSRTG 578

Query: 148  SGDDAISFLNAVTDKKFPSTSVVLRMIEAFLKVGRHSEARDCFSKCPSY 2
            +GDDAI+FL A+T K+FPSTSV L+  EAF K GRH+EA+D  SKCP Y
Sbjct: 579  TGDDAITFLRAMTVKRFPSTSVFLQTFEAFFKAGRHNEAQDFLSKCPGY 627


>ref|XP_003552628.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
            mitochondrial-like [Glycine max]
          Length = 629

 Score =  265 bits (676), Expect = 1e-68
 Identities = 140/289 (48%), Positives = 184/289 (63%), Gaps = 2/289 (0%)
 Frame = -1

Query: 862  LYEYKMGSATKPPVQDGVSLFRNVVKWGRNLDMRLFSKVVETFTEGGYSLTTSILDEVVK 683
            LYE+ M  A KP VQ  V L R V   G+ LD  LFS+V++ FT  G  LT S+ + V+K
Sbjct: 315  LYEFAMAGANKPTVQCCVFLLRKVAA-GKELDTDLFSRVLKVFTGNGNVLTDSVANAVLK 373

Query: 682  SLISVEKVKECDKILKAMEKGGCIPSSELYNKIIYHLATVGG--EAVLMMSEMKASGHIP 509
            SL SV +  E +K+LK ME  G +    L +KI Y L   G   +A   M+ ++ SG  P
Sbjct: 374  SLTSVGRTGEWNKVLKEMEDCGFVAGGSLQSKIAYRLGAAGNKEQAHEFMNRIEVSGSNP 433

Query: 508  DSKTWTSLIFGQCIAGDVKKASNSVRTMVKNFGITDAGPAFEEVVNGFCQQRKTTEAYKF 329
              KTW SLI G C+AG++ KA  S + +V+  G+  AG +F  ++N +CQ  +  +A K 
Sbjct: 434  YRKTWESLIQGYCVAGNLDKAFESFKEIVEKEGVASAGYSFNVLMNSYCQMNRAVDASKI 493

Query: 328  LFKTVREHHFKPQHSTYKMLIWKLLAEGRFNEALILLGLMNGHGFSPFLDPFIDHISKSG 149
            L + V E   KP HSTYK+L+ KLL +G F +AL +LGLM  HGF PF DPFI+H+SKSG
Sbjct: 494  LCRLVNEKQLKPWHSTYKLLVTKLLVQGGFTDALNILGLMRTHGFPPFTDPFIEHLSKSG 553

Query: 148  SGDDAISFLNAVTDKKFPSTSVVLRMIEAFLKVGRHSEARDCFSKCPSY 2
            SGDDA+ FL A+T K+FPSTS+ LRM EAF K  RH EA++  SKCP Y
Sbjct: 554  SGDDAVLFLKAMTSKRFPSTSMFLRMFEAFFKHRRHEEAQNFLSKCPRY 602


>ref|XP_002329308.1| predicted protein [Populus trichocarpa] gi|222870762|gb|EEF07893.1|
            predicted protein [Populus trichocarpa]
          Length = 658

 Score =  258 bits (659), Expect = 1e-66
 Identities = 137/289 (47%), Positives = 189/289 (65%), Gaps = 2/289 (0%)
 Frame = -1

Query: 862  LYEYKMGSATKPPVQDGVSLFRNVVKWGRNLDMRLFSKVVETFTEGGYSLTTSILDEVVK 683
            LYE+ M  A KP  +    L RN+V   + LD+ LFS++V+ FTE G  LT S+LD V+K
Sbjct: 344  LYEFAMNGANKPSSKYCTYLLRNIVVC-KQLDIGLFSRIVKVFTENGNVLTDSMLDAVLK 402

Query: 682  SLISVEKVKECDKILKAMEKGGCIPSSELYNKIIYHLATVGG--EAVLMMSEMKASGHIP 509
            +L SV + KEC+KIL+ M   G + S  L  KI + L + G   EA+  +  M++SG   
Sbjct: 403  ALRSVGRFKECNKILREMMVAGFVASGNLQRKIAFGLTSAGKNYEAIEFVDHMESSGSDL 462

Query: 508  DSKTWTSLIFGQCIAGDVKKASNSVRTMVKNFGITDAGPAFEEVVNGFCQQRKTTEAYKF 329
            D+K W SLI G C++GD++KAS+  + MV+  G+T AG A E +VN +C + +  +A   
Sbjct: 463  DNKAWASLIEGHCVSGDLEKASDCFKKMVEKKGVTGAGYAVELLVNAYCLKNRAGDACNL 522

Query: 328  LFKTVREHHFKPQHSTYKMLIWKLLAEGRFNEALILLGLMNGHGFSPFLDPFIDHISKSG 149
            L   V ++   P  +TYK+LI KLLA+G F +AL LLGLM  HG  P++DPF + +SKSG
Sbjct: 523  LCDYVCQNQLHPWRTTYKVLISKLLAQGGFKDALNLLGLMQSHGIPPYIDPFFEFVSKSG 582

Query: 148  SGDDAISFLNAVTDKKFPSTSVVLRMIEAFLKVGRHSEARDCFSKCPSY 2
            +GDDAI+F+NA+T KKFPS SV LR+ EAF    RHSEA+D  SKCP +
Sbjct: 583  TGDDAIAFMNAMTTKKFPSISVSLRLFEAFFNAKRHSEAQDFLSKCPVF 631


>ref|XP_002305302.1| predicted protein [Populus trichocarpa] gi|222848266|gb|EEE85813.1|
            predicted protein [Populus trichocarpa]
          Length = 616

 Score =  255 bits (651), Expect = 1e-65
 Identities = 136/289 (47%), Positives = 186/289 (64%), Gaps = 2/289 (0%)
 Frame = -1

Query: 862  LYEYKMGSATKPPVQDGVSLFRNVVKWGRNLDMRLFSKVVETFTEGGYSLTTSILDEVVK 683
            LYE+ M  A KP  +    L R +V  G+ LDM LFS+VVE FT  G  LT ++LD V+K
Sbjct: 314  LYEFAMTGANKPSAKCCTYLLRKIVV-GKQLDMGLFSRVVEIFTGHGNVLTDAMLDAVLK 372

Query: 682  SLISVEKVKECDKILKAMEKGGCIPSSELYNKIIYHLATVG--GEAVLMMSEMKASGHIP 509
            +L +V K  EC+K+L+ M+  G + S  L  KI + L + G   EA   ++ M++SG   
Sbjct: 373  ALTNVGKFGECNKVLREMKVAGFVASGNLQRKIAFGLTSAGKNDEANEFVNHMESSGRDL 432

Query: 508  DSKTWTSLIFGQCIAGDVKKASNSVRTMVKNFGITDAGPAFEEVVNGFCQQRKTTEAYKF 329
              K W SLI G C++GD++KAS+  + MV+  G++ AG A E +VN +C + +  +A   
Sbjct: 433  SYKAWASLIEGHCVSGDLEKASDCFKIMVEKKGVSGAGYAVELLVNAYCLKNRAMDACNL 492

Query: 328  LFKTVREHHFKPQHSTYKMLIWKLLAEGRFNEALILLGLMNGHGFSPFLDPFIDHISKSG 149
            L   V ++H  P  +TYK+LI KLL +G F +AL LLGLM  HG  PF+DPF + +SKSG
Sbjct: 493  LCDYVCQNHLCPWQTTYKVLISKLLVQGAFKDALNLLGLMQSHGIPPFIDPFFEFVSKSG 552

Query: 148  SGDDAISFLNAVTDKKFPSTSVVLRMIEAFLKVGRHSEARDCFSKCPSY 2
            +GDDAI+F+NA+T KKFPS SV LRM +AF K  RH EA+D  SKCP Y
Sbjct: 553  TGDDAIAFMNAMTTKKFPSISVALRMFKAFFKAKRHGEAQDFLSKCPIY 601