BLASTX nr result
ID: Coptis24_contig00024258
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00024258
(1149 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004136096.1| PREDICTED: uncharacterized protein LOC101205... 190 6e-87
ref|XP_004158824.1| PREDICTED: pentatricopeptide repeat-containi... 190 6e-87
ref|XP_002530453.1| pentatricopeptide repeat-containing protein,... 187 8e-86
ref|XP_002274114.2| PREDICTED: pentatricopeptide repeat-containi... 207 9e-77
ref|XP_002274044.2| PREDICTED: pentatricopeptide repeat-containi... 207 9e-77
>ref|XP_004136096.1| PREDICTED: uncharacterized protein LOC101205322 [Cucumis sativus]
Length = 1559
Score = 190 bits (483), Expect(3) = 6e-87
Identities = 90/144 (62%), Positives = 113/144 (78%)
Frame = -2
Query: 962 GNRGRRCKLYKEMKKKGIVLDVVAYNTDLHVIGISEGVDVSITLYKEMIELGCKPNIVTY 783
G + KLYKEMKKKG+ LDVVAYNT +H +GISEGVD + ++ EM E+GCKPN+VT
Sbjct: 787 GKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTC 846
Query: 782 NIIVKFFCQLGRFRLAYVILDQMPEKGCFPNVITYHGFFGCLEKPKEMLRLFDRMIESGV 603
N ++K FC+ GRF+ A+++LDQM ++ C PNVITYH FF LEKPKE+L LFDRMI+ GV
Sbjct: 847 NTVIKLFCENGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGV 906
Query: 602 RPRMDTYVMLLRRFGRWGSSSSVY 531
P+MDTYVMLLR+FGRWG V+
Sbjct: 907 HPKMDTYVMLLRKFGRWGFLRPVF 930
Score = 92.0 bits (227), Expect(3) = 6e-87
Identities = 45/64 (70%), Positives = 52/64 (81%)
Frame = -3
Query: 553 GVLRPVFIVGKKMEEHGCSPDASAYNAVIDALI*KNMVDMARKYDEEMLVKGLSAKPRKE 374
G LRPVF+V KMEE GCSP+ AYNA+IDAL+ K M+DMARKYDEEM+ KGLS K R E
Sbjct: 924 GFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLRVE 983
Query: 373 LGTK 362
LGT+
Sbjct: 984 LGTQ 987
Score = 87.8 bits (216), Expect(3) = 6e-87
Identities = 37/51 (72%), Positives = 43/51 (84%), Gaps = 3/51 (5%)
Frame = -1
Query: 1086 LPIRGWLKMGWWGKCR---EKMDERGIEKDLHSYSIYMDIVCKSGKPWKTL 943
L +RGWLKMGWW KCR E+MD++G+ KDLHSYSIYMDI CKSGKPWK +
Sbjct: 743 LILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAV 793
>ref|XP_004158824.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
mitochondrial-like [Cucumis sativus]
Length = 450
Score = 190 bits (483), Expect(3) = 6e-87
Identities = 90/144 (62%), Positives = 113/144 (78%)
Frame = -2
Query: 962 GNRGRRCKLYKEMKKKGIVLDVVAYNTDLHVIGISEGVDVSITLYKEMIELGCKPNIVTY 783
G + KLYKEMKKKG+ LDVVAYNT +H +GISEGVD + ++ EM E+GCKPN+VT
Sbjct: 236 GKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAVGISEGVDFASRVFHEMKEMGCKPNVVTC 295
Query: 782 NIIVKFFCQLGRFRLAYVILDQMPEKGCFPNVITYHGFFGCLEKPKEMLRLFDRMIESGV 603
N ++K FC+ GRF+ A+++LDQM ++ C PNVITYH FF LEKPKE+L LFDRMI+ GV
Sbjct: 296 NTVIKLFCENGRFKDAHMMLDQMLKRDCQPNVITYHCFFRSLEKPKEILVLFDRMIKYGV 355
Query: 602 RPRMDTYVMLLRRFGRWGSSSSVY 531
P+MDTYVMLLR+FGRWG V+
Sbjct: 356 HPKMDTYVMLLRKFGRWGFLRPVF 379
Score = 92.0 bits (227), Expect(3) = 6e-87
Identities = 45/64 (70%), Positives = 52/64 (81%)
Frame = -3
Query: 553 GVLRPVFIVGKKMEEHGCSPDASAYNAVIDALI*KNMVDMARKYDEEMLVKGLSAKPRKE 374
G LRPVF+V KMEE GCSP+ AYNA+IDAL+ K M+DMARKYDEEM+ KGLS K R E
Sbjct: 373 GFLRPVFLVWNKMEELGCSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLRVE 432
Query: 373 LGTK 362
LGT+
Sbjct: 433 LGTQ 436
Score = 87.8 bits (216), Expect(3) = 6e-87
Identities = 37/51 (72%), Positives = 43/51 (84%), Gaps = 3/51 (5%)
Frame = -1
Query: 1086 LPIRGWLKMGWWGKCR---EKMDERGIEKDLHSYSIYMDIVCKSGKPWKTL 943
L +RGWLKMGWW KCR E+MD++G+ KDLHSYSIYMDI CKSGKPWK +
Sbjct: 192 LILRGWLKMGWWSKCRDFWEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAV 242
>ref|XP_002530453.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223529998|gb|EEF31923.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 391
Score = 187 bits (474), Expect(3) = 8e-86
Identities = 87/138 (63%), Positives = 109/138 (78%)
Frame = -2
Query: 962 GNRGRRCKLYKEMKKKGIVLDVVAYNTDLHVIGISEGVDVSITLYKEMIELGCKPNIVTY 783
G + KLYKEMK+KG+ LDVV+YN + +G+SEGVD ++ +Y+EM ELGC PN+VTY
Sbjct: 186 GKPWKAVKLYKEMKRKGMKLDVVSYNIVVRAVGLSEGVDFAMRVYREMKELGCMPNVVTY 245
Query: 782 NIIVKFFCQLGRFRLAYVILDQMPEKGCFPNVITYHGFFGCLEKPKEMLRLFDRMIESGV 603
N I+K C+ GR + AY +LD M +KG +VITYH FF CLEKPKE+L LFDRMIESGV
Sbjct: 246 NTIIKLLCETGRVKEAYKMLDDMRKKGIVADVITYHCFFRCLEKPKEILWLFDRMIESGV 305
Query: 602 RPRMDTYVMLLRRFGRWG 549
+PRMDTYVML+R+FGRWG
Sbjct: 306 QPRMDTYVMLMRKFGRWG 323
Score = 92.4 bits (228), Expect(3) = 8e-86
Identities = 45/64 (70%), Positives = 51/64 (79%)
Frame = -3
Query: 553 GVLRPVFIVGKKMEEHGCSPDASAYNAVIDALI*KNMVDMARKYDEEMLVKGLSAKPRKE 374
G LRPV +V KKMEE GCSPD AYNA+IDAL+ K M+ MAR+Y+EEML KGLSAKPR E
Sbjct: 323 GFLRPVLLVWKKMEEQGCSPDEFAYNALIDALVQKGMLHMARRYEEEMLAKGLSAKPRAE 382
Query: 373 LGTK 362
L K
Sbjct: 383 LSKK 386
Score = 87.0 bits (214), Expect(3) = 8e-86
Identities = 35/49 (71%), Positives = 41/49 (83%), Gaps = 3/49 (6%)
Frame = -1
Query: 1080 IRGWLKMGWWGKCRE---KMDERGIEKDLHSYSIYMDIVCKSGKPWKTL 943
+RGW KMGWW KCRE +MD++G+ KDLHSYSIYMDIVCK GKPWK +
Sbjct: 144 LRGWFKMGWWSKCREFWEEMDQKGVHKDLHSYSIYMDIVCKGGKPWKAV 192
>ref|XP_002274114.2| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
mitochondrial-like [Vitis vinifera]
Length = 571
Score = 207 bits (527), Expect(2) = 9e-77
Identities = 102/173 (58%), Positives = 128/173 (73%), Gaps = 4/173 (2%)
Frame = -2
Query: 1037 RKWMKGVLRRTCIRILYIWILYVS----RGNRGRRCKLYKEMKKKGIVLDVVAYNTDLHV 870
R++ + + RR + LY + +Y+ G R KLYKEMKKKGI LDVVAYNT +
Sbjct: 338 REFWEEMDRRGVCKSLYSYSIYMDIQCKSGKPWRAVKLYKEMKKKGIRLDVVAYNTVIRA 397
Query: 869 IGISEGVDVSITLYKEMIELGCKPNIVTYNIIVKFFCQLGRFRLAYVILDQMPEKGCFPN 690
IG+SEGVD SI +++EM E+GC+PN+VTYN I+K C+ GR R AY + DQM EKG PN
Sbjct: 398 IGLSEGVDFSIRVFREMKEVGCEPNVVTYNTIIKLLCENGRIREAYGVFDQMREKGYAPN 457
Query: 689 VITYHGFFGCLEKPKEMLRLFDRMIESGVRPRMDTYVMLLRRFGRWGSSSSVY 531
VITYH FFGC+EKPK++LR FDRMI SGVRPRMDTYVML+++FGRWG V+
Sbjct: 458 VITYHCFFGCIEKPKQILRTFDRMINSGVRPRMDTYVMLMKKFGRWGFLRPVF 510
Score = 107 bits (267), Expect(2) = 9e-77
Identities = 52/65 (80%), Positives = 57/65 (87%)
Frame = -3
Query: 553 GVLRPVFIVGKKMEEHGCSPDASAYNAVIDALI*KNMVDMARKYDEEMLVKGLSAKPRKE 374
G LRPVFIV KKMEE GCSPDA AYNA+IDAL+ K MVD+ARKY+EEML KGLSAKPR +
Sbjct: 504 GFLRPVFIVWKKMEEQGCSPDACAYNALIDALVQKGMVDLARKYEEEMLAKGLSAKPRVD 563
Query: 373 LGTKP 359
LGTKP
Sbjct: 564 LGTKP 568
Score = 78.6 bits (192), Expect = 3e-12
Identities = 33/49 (67%), Positives = 39/49 (79%), Gaps = 3/49 (6%)
Frame = -1
Query: 1080 IRGWLKMGWWGKCR---EKMDERGIEKDLHSYSIYMDIVCKSGKPWKTL 943
+RGW KMGWW KCR E+MD RG+ K L+SYSIYMDI CKSGKPW+ +
Sbjct: 325 LRGWFKMGWWKKCREFWEEMDRRGVCKSLYSYSIYMDIQCKSGKPWRAV 373
>ref|XP_002274044.2| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
mitochondrial-like [Vitis vinifera]
Length = 390
Score = 207 bits (527), Expect(2) = 9e-77
Identities = 102/173 (58%), Positives = 128/173 (73%), Gaps = 4/173 (2%)
Frame = -2
Query: 1037 RKWMKGVLRRTCIRILYIWILYVS----RGNRGRRCKLYKEMKKKGIVLDVVAYNTDLHV 870
R++ + + RR + LY + +Y+ G R KLYKEMKKKGI LDVVAYNT +
Sbjct: 157 REFWEEMDRRGVCKSLYSYSIYMDIQCKSGKPWRAVKLYKEMKKKGIRLDVVAYNTVIRA 216
Query: 869 IGISEGVDVSITLYKEMIELGCKPNIVTYNIIVKFFCQLGRFRLAYVILDQMPEKGCFPN 690
IG+SEGVD SI +++EM E+GC+PN+VTYN I+K C+ GR R AY + DQM EKG PN
Sbjct: 217 IGLSEGVDFSIRVFREMKEVGCEPNVVTYNTIIKLLCENGRIREAYGVFDQMREKGYAPN 276
Query: 689 VITYHGFFGCLEKPKEMLRLFDRMIESGVRPRMDTYVMLLRRFGRWGSSSSVY 531
VITYH FFGC+EKPK++LR FDRMI SGVRPRMDTYVML+++FGRWG V+
Sbjct: 277 VITYHCFFGCIEKPKQILRTFDRMINSGVRPRMDTYVMLMKKFGRWGFLRPVF 329
Score = 107 bits (267), Expect(2) = 9e-77
Identities = 52/65 (80%), Positives = 57/65 (87%)
Frame = -3
Query: 553 GVLRPVFIVGKKMEEHGCSPDASAYNAVIDALI*KNMVDMARKYDEEMLVKGLSAKPRKE 374
G LRPVFIV KKMEE GCSPDA AYNA+IDAL+ K MVD+ARKY+EEML KGLSAKPR +
Sbjct: 323 GFLRPVFIVWKKMEEQGCSPDACAYNALIDALVQKGMVDLARKYEEEMLAKGLSAKPRVD 382
Query: 373 LGTKP 359
LGTKP
Sbjct: 383 LGTKP 387
Score = 78.6 bits (192), Expect = 3e-12
Identities = 33/49 (67%), Positives = 39/49 (79%), Gaps = 3/49 (6%)
Frame = -1
Query: 1080 IRGWLKMGWWGKCR---EKMDERGIEKDLHSYSIYMDIVCKSGKPWKTL 943
+RGW KMGWW KCR E+MD RG+ K L+SYSIYMDI CKSGKPW+ +
Sbjct: 144 LRGWFKMGWWKKCREFWEEMDRRGVCKSLYSYSIYMDIQCKSGKPWRAV 192