BLASTX nr result
ID: Coptis24_contig00024245
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00024245
(362 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004165485.1| PREDICTED: psbB mRNA maturation factor Mbb1,... 226 2e-57
ref|XP_004134505.1| PREDICTED: psbB mRNA maturation factor Mbb1,... 226 2e-57
ref|XP_002519222.1| pre-mRNA splicing factor, putative [Ricinus ... 224 7e-57
ref|XP_002272572.1| PREDICTED: psbB mRNA maturation factor Mbb1,... 224 7e-57
emb|CAN76674.1| hypothetical protein VITISV_011791 [Vitis vinifera] 222 3e-56
>ref|XP_004165485.1| PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like
[Cucumis sativus]
Length = 636
Score = 226 bits (575), Expect = 2e-57
Identities = 105/120 (87%), Positives = 115/120 (95%)
Frame = +1
Query: 1 ILSRQSKAADARAVYERGCQATQGENPYIWQCWAVLEKRMGNIRRARELFDAATVADKKH 180
+L +Q KAA+A+AVYERGCQATQGEN YIWQCWAVLE RMGNIR+ARELFDAATVA+KKH
Sbjct: 179 MLGKQMKAAEAKAVYERGCQATQGENSYIWQCWAVLESRMGNIRKARELFDAATVANKKH 238
Query: 181 IAAWHGWAVLELKQGNVKKARNLLSKGLKYCGGNEYVYQTLALLEAKANRIEQARYLFKQ 360
IAAWHGWAVLELKQGN+KKARNLL+KGLKYCGGNEY+YQTLALLEAK+NR EQARYLFKQ
Sbjct: 239 IAAWHGWAVLELKQGNIKKARNLLAKGLKYCGGNEYIYQTLALLEAKSNRYEQARYLFKQ 298
Score = 63.5 bits (153), Expect = 2e-08
Identities = 35/91 (38%), Positives = 48/91 (52%)
Frame = +1
Query: 88 WQCWAVLEKRMGNIRRARELFDAATVADKKHIAAWHGWAVLELKQGNVKKARNLLSKGLK 267
W WA LE ++ N ARELF+ A A K+ AWH W + E GN++K LL G
Sbjct: 310 WLAWAQLEMQLENNLLARELFEKAIQASPKNRFAWHIWGLFEANTGNIEKGMKLLKIGHV 369
Query: 268 YCGGNEYVYQTLALLEAKANRIEQARYLFKQ 360
+ + Q+L LLE K + AR LF++
Sbjct: 370 LNPRDPVLLQSLGLLEYKNSSASLARVLFRR 400
Score = 56.6 bits (135), Expect = 2e-06
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Frame = +1
Query: 10 RQSKAADARAVYERGCQATQGENPYIWQCWAVLEKRMGNIRRARELFDAATVADKKHIAA 189
+ S A+ AR ++ R + P +W W +E + GNI +AREL+ A + D +A
Sbjct: 387 KNSSASLARVLFRRASELDPKHQP-VWIAWGWMEWKEGNIVKARELYQRALLIDSDSESA 445
Query: 190 ---WHGWAVLELKQGNVKKARNLLSKGLKYCGGNEYVYQTLALLE---AKANRIEQARYL 351
W VLE + GN+ AR L L + + T A LE A R E+ R L
Sbjct: 446 ARCLQAWGVLEQRAGNLSAARRLYRSSLNINSQSYVTWMTWAALEEDQGNAIRAEEIRNL 505
Query: 352 FKQ 360
+ Q
Sbjct: 506 YFQ 508
>ref|XP_004134505.1| PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like
[Cucumis sativus]
Length = 636
Score = 226 bits (575), Expect = 2e-57
Identities = 105/120 (87%), Positives = 115/120 (95%)
Frame = +1
Query: 1 ILSRQSKAADARAVYERGCQATQGENPYIWQCWAVLEKRMGNIRRARELFDAATVADKKH 180
+L +Q KAA+A+AVYERGCQATQGEN YIWQCWAVLE RMGNIR+ARELFDAATVA+KKH
Sbjct: 179 MLGKQMKAAEAKAVYERGCQATQGENSYIWQCWAVLESRMGNIRKARELFDAATVANKKH 238
Query: 181 IAAWHGWAVLELKQGNVKKARNLLSKGLKYCGGNEYVYQTLALLEAKANRIEQARYLFKQ 360
IAAWHGWAVLELKQGN+KKARNLL+KGLKYCGGNEY+YQTLALLEAK+NR EQARYLFKQ
Sbjct: 239 IAAWHGWAVLELKQGNIKKARNLLAKGLKYCGGNEYIYQTLALLEAKSNRYEQARYLFKQ 298
Score = 63.5 bits (153), Expect = 2e-08
Identities = 35/91 (38%), Positives = 48/91 (52%)
Frame = +1
Query: 88 WQCWAVLEKRMGNIRRARELFDAATVADKKHIAAWHGWAVLELKQGNVKKARNLLSKGLK 267
W WA LE ++ N ARELF+ A A K+ AWH W + E GN++K LL G
Sbjct: 310 WLAWAQLEMQLENNLLARELFEKAIQASPKNRFAWHIWGLFEANTGNIEKGMKLLKIGHV 369
Query: 268 YCGGNEYVYQTLALLEAKANRIEQARYLFKQ 360
+ + Q+L LLE K + AR LF++
Sbjct: 370 LNPRDPVLLQSLGLLEYKNSSASLARVLFRR 400
Score = 56.2 bits (134), Expect = 3e-06
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Frame = +1
Query: 10 RQSKAADARAVYERGCQATQGENPYIWQCWAVLEKRMGNIRRARELFDAATVADKKHIAA 189
+ S A+ AR ++ R + P +W W +E + GNI +AREL+ A + D +A
Sbjct: 387 KNSSASLARVLFRRASELDPKHQP-VWIAWGWMEWKEGNIVKARELYQRALLIDSDSESA 445
Query: 190 ---WHGWAVLELKQGNVKKARNLLSKGLKYCGGNEYVYQTLALLE---AKANRIEQARYL 351
W VLE + GN+ AR L L + + T A LE A R E+ R L
Sbjct: 446 ARCLQAWGVLEQRVGNLSAARRLYRSSLNINSQSYVTWMTWAALEEDQGNAIRAEEIRNL 505
Query: 352 FKQ 360
+ Q
Sbjct: 506 YFQ 508
>ref|XP_002519222.1| pre-mRNA splicing factor, putative [Ricinus communis]
gi|223541537|gb|EEF43086.1| pre-mRNA splicing factor,
putative [Ricinus communis]
Length = 648
Score = 224 bits (570), Expect = 7e-57
Identities = 103/120 (85%), Positives = 115/120 (95%)
Frame = +1
Query: 1 ILSRQSKAADARAVYERGCQATQGENPYIWQCWAVLEKRMGNIRRARELFDAATVADKKH 180
IL++QSK A+ARAVYE+GCQATQGEN YIWQCWAVLE +MGNIRRARELFDAATVADK+H
Sbjct: 199 ILTKQSKTAEARAVYEKGCQATQGENAYIWQCWAVLENKMGNIRRARELFDAATVADKRH 258
Query: 181 IAAWHGWAVLELKQGNVKKARNLLSKGLKYCGGNEYVYQTLALLEAKANRIEQARYLFKQ 360
IAAWHGWAVLELKQGN+KKAR LL+KG+K+CGGNEY+YQTLALLEAKANR EQARYLF+Q
Sbjct: 259 IAAWHGWAVLELKQGNIKKARQLLAKGIKFCGGNEYIYQTLALLEAKANRYEQARYLFRQ 318
Score = 65.5 bits (158), Expect = 4e-09
Identities = 37/91 (40%), Positives = 48/91 (52%)
Frame = +1
Query: 88 WQCWAVLEKRMGNIRRARELFDAATVADKKHIAAWHGWAVLELKQGNVKKARNLLSKGLK 267
W WA +E + N ARELF A A K+ AWH W V E GN++ AR LL G
Sbjct: 330 WLAWAQVEVQQENNLTARELFQKAVQASPKNRFAWHVWGVFEANIGNIEMARKLLKIGHT 389
Query: 268 YCGGNEYVYQTLALLEAKANRIEQARYLFKQ 360
+ + Q+LALLE K + AR LF++
Sbjct: 390 LNPRDPVLLQSLALLEYKHSTANLARVLFRR 420
>ref|XP_002272572.1| PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic [Vitis
vinifera] gi|296083248|emb|CBI22884.3| unnamed protein
product [Vitis vinifera]
Length = 651
Score = 224 bits (570), Expect = 7e-57
Identities = 104/120 (86%), Positives = 116/120 (96%)
Frame = +1
Query: 1 ILSRQSKAADARAVYERGCQATQGENPYIWQCWAVLEKRMGNIRRARELFDAATVADKKH 180
ILS+QSK ++ARAVYE+GCQATQGENPYIWQCWAVLE +MGNIRRAR+LFDAATVADK+H
Sbjct: 188 ILSKQSKTSEARAVYEKGCQATQGENPYIWQCWAVLENKMGNIRRARDLFDAATVADKRH 247
Query: 181 IAAWHGWAVLELKQGNVKKARNLLSKGLKYCGGNEYVYQTLALLEAKANRIEQARYLFKQ 360
+AAWHGWAVLELKQGN+KKAR+LL+KGLKY GGNEY+YQTLALLEAKANR EQARYLFKQ
Sbjct: 248 VAAWHGWAVLELKQGNIKKARHLLAKGLKYGGGNEYIYQTLALLEAKANRHEQARYLFKQ 307
Score = 62.8 bits (151), Expect = 3e-08
Identities = 35/91 (38%), Positives = 46/91 (50%)
Frame = +1
Query: 88 WQCWAVLEKRMGNIRRARELFDAATVADKKHIAAWHGWAVLELKQGNVKKARNLLSKGLK 267
W WA LE + N AR+LF+ A A K+ AWH W V E GN R LL G
Sbjct: 319 WLAWAQLEMQQENNHTARQLFEKAVQASPKNRFAWHVWGVFEANLGNADVGRKLLKIGHA 378
Query: 268 YCGGNEYVYQTLALLEAKANRIEQARYLFKQ 360
+ + Q+LALLE K + +R LF++
Sbjct: 379 VNPRDPVLLQSLALLEYKYSTANLSRVLFRR 409
>emb|CAN76674.1| hypothetical protein VITISV_011791 [Vitis vinifera]
Length = 629
Score = 222 bits (565), Expect = 3e-56
Identities = 103/120 (85%), Positives = 115/120 (95%)
Frame = +1
Query: 1 ILSRQSKAADARAVYERGCQATQGENPYIWQCWAVLEKRMGNIRRARELFDAATVADKKH 180
ILS+QSK ++ARAVYE+GCQATQGENPYIWQCWAVLE +MGNIRRAR+LFDAATVADK+H
Sbjct: 188 ILSKQSKTSEARAVYEKGCQATQGENPYIWQCWAVLENKMGNIRRARDLFDAATVADKRH 247
Query: 181 IAAWHGWAVLELKQGNVKKARNLLSKGLKYCGGNEYVYQTLALLEAKANRIEQARYLFKQ 360
+AAWHGWAVLELKQGN+KKAR+LL+KGLKY GGNEY+YQTL LLEAKANR EQARYLFKQ
Sbjct: 248 VAAWHGWAVLELKQGNIKKARHLLAKGLKYGGGNEYIYQTLXLLEAKANRHEQARYLFKQ 307
Score = 62.8 bits (151), Expect = 3e-08
Identities = 35/91 (38%), Positives = 46/91 (50%)
Frame = +1
Query: 88 WQCWAVLEKRMGNIRRARELFDAATVADKKHIAAWHGWAVLELKQGNVKKARNLLSKGLK 267
W WA LE + N AR+LF+ A A K+ AWH W V E GN R LL G
Sbjct: 319 WLAWAQLEMQQENNHTARQLFEKAVQASPKNRFAWHVWGVFEANLGNADVGRKLLKIGHA 378
Query: 268 YCGGNEYVYQTLALLEAKANRIEQARYLFKQ 360
+ + Q+LALLE K + +R LF++
Sbjct: 379 VNPRDPVLLQSLALLEYKYSTANLSRVLFRR 409