BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024238
         (475 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002319950.1| predicted protein [Populus trichocarpa] gi|2...   236   1e-60
ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containi...   234   7e-60
ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containi...   216   2e-54
ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containi...   210   1e-52
ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containi...   210   1e-52

>ref|XP_002319950.1| predicted protein [Populus trichocarpa] gi|222858326|gb|EEE95873.1|
           predicted protein [Populus trichocarpa]
          Length = 746

 Score =  236 bits (602), Expect = 1e-60
 Identities = 111/140 (79%), Positives = 128/140 (91%)
 Frame = -1

Query: 475 GIEPRHQHYACVVDLLGRAGYLDKAFNFIMKMPMEPGITVWGALLSACKNYRNVPLGEYA 296
           GIEPRHQHYACVVDLLGRAG+LD+A+NF+M MP+EPG++VWGALLSACK +R+V LGEYA
Sbjct: 506 GIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYA 565

Query: 295 AEHVFSLDPYNAGHYVQLSNLYASVRRWDGVSKVRVLMREKGLSKDLGYSLIEISGKLQA 116
           AE +FSLDPYN GHYVQLSNLYAS   WD V+KVRVLMREKGL+K LGYS+IEI+GKLQA
Sbjct: 566 AERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQA 625

Query: 115 FRVGDKSHPRSKEIFEEMGD 56
           F+ GDK+HPRSKEIFEE+ D
Sbjct: 626 FQAGDKTHPRSKEIFEEVED 645


>ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera] gi|296081235|emb|CBI17979.3| unnamed
           protein product [Vitis vinifera]
          Length = 742

 Score =  234 bits (596), Expect = 7e-60
 Identities = 110/138 (79%), Positives = 126/138 (91%)
 Frame = -1

Query: 475 GIEPRHQHYACVVDLLGRAGYLDKAFNFIMKMPMEPGITVWGALLSACKNYRNVPLGEYA 296
           GIE RHQHYACVVDLLGR+G+L++A++FI  MP+EPG++VWGALL ACK YR+V LGEYA
Sbjct: 502 GIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYA 561

Query: 295 AEHVFSLDPYNAGHYVQLSNLYASVRRWDGVSKVRVLMREKGLSKDLGYSLIEISGKLQA 116
           AE +FSLDP+N GHYVQLSNLYAS R WD V+KVR+LMREKGLSKDLGYSLIEI+GKLQA
Sbjct: 562 AEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQA 621

Query: 115 FRVGDKSHPRSKEIFEEM 62
           FRVGDKSHPR KEIFEE+
Sbjct: 622 FRVGDKSHPRFKEIFEEL 639


>ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  216 bits (549), Expect = 2e-54
 Identities = 104/137 (75%), Positives = 120/137 (87%)
 Frame = -1

Query: 472 IEPRHQHYACVVDLLGRAGYLDKAFNFIMKMPMEPGITVWGALLSACKNYRNVPLGEYAA 293
           I PR++HY+CVVDLLGRAGYL +A  FIMK+P+EPG++VWGALLSACK YR V LGEYAA
Sbjct: 488 IVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAA 547

Query: 292 EHVFSLDPYNAGHYVQLSNLYASVRRWDGVSKVRVLMREKGLSKDLGYSLIEISGKLQAF 113
             +FSLDPYN GHYVQLSNLYAS   WD V+ VRVLMREKGL+KDLGYS+IEI+GKLQAF
Sbjct: 548 NKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAF 607

Query: 112 RVGDKSHPRSKEIFEEM 62
            VGDKSHP +KEIF+E+
Sbjct: 608 HVGDKSHPMAKEIFDEL 624


>ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  210 bits (534), Expect = 1e-52
 Identities = 96/138 (69%), Positives = 119/138 (86%)
 Frame = -1

Query: 475 GIEPRHQHYACVVDLLGRAGYLDKAFNFIMKMPMEPGITVWGALLSACKNYRNVPLGEYA 296
           GIEP HQHY+CVVDLLGRAGYL++A++FIM MP++PG++VWGALLSACK +R V LGE A
Sbjct: 418 GIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIA 477

Query: 295 AEHVFSLDPYNAGHYVQLSNLYASVRRWDGVSKVRVLMREKGLSKDLGYSLIEISGKLQA 116
           AE +F LDPYN GHYVQLSNLYAS   W  V+ VR++M +KGL+KDLG+S IEI+G L+ 
Sbjct: 478 AEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLET 537

Query: 115 FRVGDKSHPRSKEIFEEM 62
           F+VGD+SHP+SKEIFEE+
Sbjct: 538 FQVGDRSHPKSKEIFEEL 555


>ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  210 bits (534), Expect = 1e-52
 Identities = 96/138 (69%), Positives = 119/138 (86%)
 Frame = -1

Query: 475 GIEPRHQHYACVVDLLGRAGYLDKAFNFIMKMPMEPGITVWGALLSACKNYRNVPLGEYA 296
           GIEP HQHY+CVVDLLGRAGYL++A++FIM MP++PG++VWGALLSACK +R V LGE A
Sbjct: 433 GIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIA 492

Query: 295 AEHVFSLDPYNAGHYVQLSNLYASVRRWDGVSKVRVLMREKGLSKDLGYSLIEISGKLQA 116
           AE +F LDPYN GHYVQLSNLYAS   W  V+ VR++M +KGL+KDLG+S IEI+G L+ 
Sbjct: 493 AEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLET 552

Query: 115 FRVGDKSHPRSKEIFEEM 62
           F+VGD+SHP+SKEIFEE+
Sbjct: 553 FQVGDRSHPKSKEIFEEL 570