BLASTX nr result

ID: Coptis24_contig00024220 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024220
         (455 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003590818.1| PGPS/D12 [Medicago truncatula] gi|355479866|...   163   1e-38
ref|XP_003535433.1| PREDICTED: cell number regulator 10-like [Gl...   150   8e-35
ref|XP_003575228.1| PREDICTED: cell number regulator 2-like [Bra...   137   9e-31
dbj|BAK01385.1| predicted protein [Hordeum vulgare subsp. vulgare]    128   5e-28
dbj|BAK04959.1| predicted protein [Hordeum vulgare subsp. vulgare]    128   5e-28

>ref|XP_003590818.1| PGPS/D12 [Medicago truncatula] gi|355479866|gb|AES61069.1| PGPS/D12
           [Medicago truncatula]
          Length = 137

 Score =  163 bits (413), Expect = 1e-38
 Identities = 73/114 (64%), Positives = 85/114 (74%)
 Frame = +3

Query: 114 MNVQSHSQQSKWSSGLCGPEDQDVGTCFITCCLPCVTFGQIAEMLDEGQSSCASHAVMYG 293
           MN+   S   KWS+ LCG   ++ GTC ITCCLPC+TFGQIAE++DEG+SSCA    +YG
Sbjct: 1   MNIFGRSSPPKWSAKLCGC-GENPGTCLITCCLPCITFGQIAEVVDEGRSSCAMQGCVYG 59

Query: 294 LLMLCQCHCLYGAVYREKLRMKFSLPAEPCGDCCVHWCCGNCALCQEHAELTFR 455
           LLM   CH LY  +YREKLR K+ LPAEPC DCCVH+CC  CALCQEHAEL  R
Sbjct: 60  LLMTITCHWLYSCLYREKLRAKYGLPAEPCCDCCVHFCCDACALCQEHAELKAR 113


>ref|XP_003535433.1| PREDICTED: cell number regulator 10-like [Glycine max]
          Length = 136

 Score =  150 bits (380), Expect = 8e-35
 Identities = 69/104 (66%), Positives = 77/104 (74%)
 Frame = +3

Query: 144 KWSSGLCGPEDQDVGTCFITCCLPCVTFGQIAEMLDEGQSSCASHAVMYGLLMLCQCHCL 323
           KWS+  C    +D  TC ITCCLPCVTFGQIAE++DEG+SSC      YGLLML  CH L
Sbjct: 10  KWSAKFCDC-GEDPKTCLITCCLPCVTFGQIAEIVDEGRSSCFGQGCAYGLLMLVTCHWL 68

Query: 324 YGAVYREKLRMKFSLPAEPCGDCCVHWCCGNCALCQEHAELTFR 455
           Y  +YREKLR KF LPAEPC DCCV++CC  CALCQEHAEL  R
Sbjct: 69  YSCLYREKLRSKFGLPAEPCCDCCVNFCCEACALCQEHAELKAR 112


>ref|XP_003575228.1| PREDICTED: cell number regulator 2-like [Brachypodium distachyon]
          Length = 187

 Score =  137 bits (345), Expect = 9e-31
 Identities = 58/113 (51%), Positives = 74/113 (65%), Gaps = 1/113 (0%)
 Frame = +3

Query: 120 VQSHSQQSKWSSGLCGPEDQDVGTCFITCCLPCVTFGQIAEMLDEGQSSCASHAVMYGLL 299
           +Q    Q+ WS+GLC   D D G C +TC  PC+TFGQ+AE++D G SSC S   +Y L+
Sbjct: 44  MQGAQAQAAWSTGLCDCFD-DCGNCCVTCLCPCITFGQVAEIIDRGSSSCGSSGALYALI 102

Query: 300 MLCQ-CHCLYGAVYREKLRMKFSLPAEPCGDCCVHWCCGNCALCQEHAELTFR 455
           ML   CHC+Y   YR K+R ++ L   PC DCC+HWCC  CALCQE+ EL  R
Sbjct: 103 MLLTGCHCVYSCFYRAKMRAQYGLQERPCADCCIHWCCEPCALCQEYRELKKR 155


>dbj|BAK01385.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 187

 Score =  128 bits (321), Expect = 5e-28
 Identities = 55/113 (48%), Positives = 72/113 (63%), Gaps = 1/113 (0%)
 Frame = +3

Query: 120 VQSHSQQSKWSSGLCGPEDQDVGTCFITCCLPCVTFGQIAEMLDEGQSSCASHAVMYGLL 299
           +Q+ +  + WS+GLC   D D   C +TC  PCVTFGQIAE++D G +SC +   +Y L+
Sbjct: 44  MQAQAPLAAWSTGLCDCFD-DCSNCCVTCLCPCVTFGQIAEIIDRGSTSCGASGALYALI 102

Query: 300 M-LCQCHCLYGAVYREKLRMKFSLPAEPCGDCCVHWCCGNCALCQEHAELTFR 455
           M L  C C+Y   YR K+R  + L   PC DCC+HWCC  CALCQE+ EL  R
Sbjct: 103 MCLTGCQCVYSCFYRAKMRAHYGLQESPCADCCIHWCCEPCALCQEYRELKKR 155


>dbj|BAK04959.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 246

 Score =  128 bits (321), Expect = 5e-28
 Identities = 55/113 (48%), Positives = 72/113 (63%), Gaps = 1/113 (0%)
 Frame = +3

Query: 120 VQSHSQQSKWSSGLCGPEDQDVGTCFITCCLPCVTFGQIAEMLDEGQSSCASHAVMYGLL 299
           +Q+ +  + WS+GLC   D D   C +TC  PCVTFGQIAE++D G +SC +   +Y L+
Sbjct: 103 MQAQAPLAAWSTGLCDCFD-DCSNCCVTCLCPCVTFGQIAEIIDRGSTSCGASGALYALI 161

Query: 300 M-LCQCHCLYGAVYREKLRMKFSLPAEPCGDCCVHWCCGNCALCQEHAELTFR 455
           M L  C C+Y   YR K+R  + L   PC DCC+HWCC  CALCQE+ EL  R
Sbjct: 162 MCLTGCQCVYSCFYRAKMRAHYGLQESPCADCCIHWCCEPCALCQEYRELKKR 214


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