BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024179
         (646 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    93   5e-17
gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    87   3e-15
gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    86   5e-15
ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...    84   2e-14
gb|ABN08796.1| Ribonuclease H [Medicago truncatula]                    84   2e-14

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 92.8 bits (229), Expect = 5e-17
 Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 1/184 (0%)
 Frame = -3

Query: 599  DLKILKHFQLQLKIRRSPKIFECYWLPPPPGILKINTDGCSKGNPGRSGWGYVFKNYRGD 420
            D  IL+ F +  + R+   I    W  P P +LK+NTDG   G  G +  G +F++  G 
Sbjct: 991  DSAILEEFSVSPRHRKYKDIILVLWKNPSPPLLKVNTDGSVVG--GLAACGGLFRDSSGS 1048

Query: 419  FLGAAAGGMGISTNYMAETMAIIQAIKQAIDLGWRYIWVECDSTSVVQAF*NNT-THWRV 243
            FLGA +  +G+++ + AET+A I A++ A   GWR +W+E DSTS +  F N++   W +
Sbjct: 1049 FLGAFSCNIGLASVFHAETLAFILALEHAAHHGWRNLWLESDSTSALMIFSNSSLVQWLL 1108

Query: 242  KEIWQSLKGKAAWINLAPSWRETNLGADSCARQGATLTQGESIWWISRPSFLIHLENHHT 63
            +  W + +     +  +    E N  AD+ A  G  + QG SIW  + P+ L      H 
Sbjct: 1109 RNRWHNAQRLGIQVISSHILHEGNRCADNLANMGHGI-QG-SIWLETLPTEL------HL 1160

Query: 62   TYYR 51
             +YR
Sbjct: 1161 DFYR 1164


>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 86.7 bits (213), Expect = 3e-15
 Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 8/168 (4%)
 Frame = -3

Query: 611 NSMHDLKILKHFQLQLKIRRSPKIFECYWLPPPPGILKINTDGCSKGNPGRSGWGYVFKN 432
           +SM D K+ + F +  K  R     E  W+PP  G +KIN DG   G+P     G +F+ 
Sbjct: 217 SSMQDFKLARLFSIPFKTNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRA 276

Query: 431 YRGDFLGAAAGGMGISTNYMAETMAIIQAIKQAIDLGWRYIWVECDSTSVVQAF*NNT-T 255
            +  F GA A  +G +T   AE  A + AI++A +L    IW+E DS +V++AF  NT  
Sbjct: 277 SQTMFCGAFAQNIGYATALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTGV 336

Query: 254 HWRVKEIW-------QSLKGKAAWINLAPSWRETNLGADSCARQGATL 132
            W++   W       +S++     +N     RE NL AD+ A+ G  L
Sbjct: 337 PWKMHIRWHNCLLFCRSIRSLCTHVN-----REGNLVADALAKNGQGL 379


>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 86.3 bits (212), Expect = 5e-15
 Identities = 56/148 (37%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
 Frame = -3

Query: 521 PPPPGILKINTDGCSKGNPGRSGWGYVFKNYRGDFLGAAAGGMGISTNYMAETMAIIQAI 342
           P   G +KIN DG + G P     G VF+N++   LG  A  +G +T + AE  A I AI
Sbjct: 5   PAVQGRVKINLDGSAFGAPSCGATGGVFRNWQTHSLGGFAQNIGHATCFKAELCAAIFAI 64

Query: 341 KQAIDLGWRYIWVECDSTSVVQAF*NNTTH--WRVKEIWQSLKGKAAWINLAPS--WRET 174
           +++I+   R IW+E DS  VV+AF +++ H  W+++  W +    A  I    +   RE 
Sbjct: 65  EKSIEYNLRDIWLETDSKLVVKAF-SSSEHVPWQLRTRWNNCLALAQKIKCVCTHIHREG 123

Query: 173 NLGADSCARQGATLTQGESIWWISRPSF 90
           N GADS A+ G +L    S WW S P F
Sbjct: 124 NAGADSLAKNGKSLALLTSQWWSSSPLF 151


>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
           gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
           protein ccsA [Medicago truncatula]
          Length = 666

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 56/181 (30%), Positives = 90/181 (49%), Gaps = 3/181 (1%)
 Frame = -3

Query: 611 NSMHDLKILKHFQLQLKIRRSPKIFECYWLPPPPGILKINTDGCSKGNPGRSGWGYVFKN 432
           ++M D K+ K F +  K++R     +  W PP   I+KIN DG S G       G V ++
Sbjct: 188 SAMQDYKVAKLFNIPFKVKRVTPHLDIIWKPPIGDIVKINCDGSSVGRHPCGSIGIVIRD 247

Query: 431 YRGDFLGAAAGGMGISTNYMAETMAIIQAIKQAIDLGWRYIWVECDSTSVVQAF*NNT-T 255
               FLGA +  +G +T   AE  A + A+++A ++   ++ +E DS  VV AF      
Sbjct: 248 SNHHFLGAISSNIGNATPLEAEFCAGMMAMEKAQEMQLMHVCLETDSLKVVNAFNKGLGV 307

Query: 254 HWRVKEIWQSLKGKAAWINLA--PSWRETNLGADSCARQGATLTQGESIWWISRPSFLIH 81
            W+++  WQ+       I+ +     RE N+ AD+ A+ G  L+   +  W S P F+ H
Sbjct: 308 PWQMRARWQNCWDFCDSISCSCVHILREGNMVADALAKHGQGLSLYYTQLWTSPPPFIYH 367

Query: 80  L 78
           L
Sbjct: 368 L 368


>gb|ABN08796.1| Ribonuclease H [Medicago truncatula]
          Length = 221

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 56/181 (30%), Positives = 90/181 (49%), Gaps = 3/181 (1%)
 Frame = -3

Query: 611 NSMHDLKILKHFQLQLKIRRSPKIFECYWLPPPPGILKINTDGCSKGNPGRSGWGYVFKN 432
           ++M D K+ K F +  K++R     +  W PP   I+KIN DG S G       G V ++
Sbjct: 25  SAMQDYKVAKLFNIPFKVKRVTPHLDIIWKPPIGDIVKINCDGSSVGRHPCGSIGIVIRD 84

Query: 431 YRGDFLGAAAGGMGISTNYMAETMAIIQAIKQAIDLGWRYIWVECDSTSVVQAF*NNT-T 255
               FLGA +  +G +T   AE  A + A+++A ++   ++ +E DS  VV AF      
Sbjct: 85  SNHHFLGAISSNIGNATPLEAEFCAGMMAMEKAQEMQLMHVCLETDSLKVVNAFNKGLGV 144

Query: 254 HWRVKEIWQSLKGKAAWINLA--PSWRETNLGADSCARQGATLTQGESIWWISRPSFLIH 81
            W+++  WQ+       I+ +     RE N+ AD+ A+ G  L+   +  W S P F+ H
Sbjct: 145 PWQMRARWQNCWDFCDSISCSCVHILREGNMVADALAKHGQGLSLYYTQLWTSPPPFIYH 204

Query: 80  L 78
           L
Sbjct: 205 L 205