BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024166
         (412 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003594391.1| F-box protein [Medicago truncatula] gi|35548...    63   3e-08
ref|XP_003594235.1| F-box protein [Medicago truncatula] gi|35548...    62   6e-08
ref|XP_003594188.1| F-box protein [Medicago truncatula] gi|87162...    59   4e-07
ref|XP_003594393.1| F-box protein [Medicago truncatula] gi|35548...    59   4e-07
ref|XP_003637499.1| F-box protein [Medicago truncatula] gi|35550...    58   7e-07

>ref|XP_003594391.1| F-box protein [Medicago truncatula] gi|355483439|gb|AES64642.1|
           F-box protein [Medicago truncatula]
          Length = 388

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
 Frame = +3

Query: 6   PDHLICN-SCNSRVATLDGNLCV-VSLDEASFELWVMKEYGARDSWTKQFIIGRHAHELE 179
           PD +I N S    +A L G LC+ V+      ++WVMKEYG RDSW K F + +   +  
Sbjct: 246 PDEIISNESFKISIAVLGGCLCLPVNYQTTKIDVWVMKEYGCRDSWCKHFTLVKSCLD-- 303

Query: 180 VQISCFLAPLCFIDDGETLVLDNGCNLLF-FELKSQTL 290
                FL PL +  DG  ++L+  C  LF ++LKS+ +
Sbjct: 304 -----FLRPLGYCSDGSKVLLEIDCKKLFWYDLKSEQI 336


>ref|XP_003594235.1| F-box protein [Medicago truncatula] gi|355483283|gb|AES64486.1|
           F-box protein [Medicago truncatula]
          Length = 325

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 9/102 (8%)
 Frame = +3

Query: 6   PDHLICNSCNSRVATLDGNLCV-VSLDEASFELWVMKEYGARDSWTKQFIIGRHAHELEV 182
           P+ +   S    V  L+G LC+ ++     FE+WVMKEYG+ DSW K F +      +++
Sbjct: 165 PEEVNSESFEINVVVLEGCLCMTLNYRNTEFEVWVMKEYGSTDSWCKLFTLMEPCFLVDL 224

Query: 183 QISCFLAPLCFIDDGETLVLD--------NGCNLLFFELKSQ 284
           +I     PLC+  DG  ++L+        N  NL++++LKS+
Sbjct: 225 EI---FRPLCYSSDGSKVLLEGIHVSTEGNNRNLIWYDLKSE 263


>ref|XP_003594188.1| F-box protein [Medicago truncatula] gi|87162697|gb|ABD28492.1|
           Cyclin-like F-box; F-box protein interaction domain;
           Galactose oxidase, central [Medicago truncatula]
           gi|355483236|gb|AES64439.1| F-box protein [Medicago
           truncatula]
          Length = 424

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
 Frame = +3

Query: 39  RVATLDGNLCV-VSLDEASFELWVMKEYGARDSWTKQFIIGRHAHELEVQISCFLAPLCF 215
           RVA L G LC+ V+ +    ++WVMK+YG+RDSW K F + +      +    FL PLC+
Sbjct: 283 RVAVLGGCLCMSVNYEATKIDVWVMKDYGSRDSWCKLFTLVKSCFNSPLD---FLRPLCY 339

Query: 216 IDDGETLVLDNGCN-------LLFFELKSQ 284
             DG  ++L+   N       L +++LKS+
Sbjct: 340 SSDGGKVLLEANPNLDKTLRKLFWYDLKSE 369


>ref|XP_003594393.1| F-box protein [Medicago truncatula] gi|355483441|gb|AES64644.1|
           F-box protein [Medicago truncatula]
          Length = 704

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
 Frame = +3

Query: 42  VATLDGNLCV-VSLDEASFELWVMKEYGARDSWTKQFIIGRHAHELEVQISCFLAPLCFI 218
           VA L G LC+ V   +   ++WVMKEYG RDSW K F +     +L +++   L P+C+ 
Sbjct: 277 VAVLGGCLCITVDYKDTKIDVWVMKEYGCRDSWCKLFTMAESCFDLPLKL---LRPICYS 333

Query: 219 DDGETLVLDNGCNLL--------FFELKSQTL 290
            DG  ++L+    LL        +++LKS+ +
Sbjct: 334 SDGSKVLLERAHVLLEVQHRKLFWYDLKSEQI 365


>ref|XP_003637499.1| F-box protein [Medicago truncatula] gi|355503434|gb|AES84637.1|
           F-box protein [Medicago truncatula]
          Length = 380

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
 Frame = +3

Query: 42  VATLDGNLC-VVSLDEASFELWVMKEYGARDSWTKQFIIGRHAHELEVQISCFLAPLCFI 218
           VA L+G LC +V+      ++WVMKEYG RDSW + F +      L ++    L PL + 
Sbjct: 252 VAVLEGCLCMIVNYQTVKIDVWVMKEYGCRDSWCELFTLAESCFILPLKT---LWPLAYS 308

Query: 219 DDGETLVLDNGCNLLF-FELKSQ 284
            DG  ++L+  C  LF ++LKS+
Sbjct: 309 SDGSMVLLEVDCEKLFWYDLKSE 331