BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00024098
         (440 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chlor...   265   2e-69
ref|XP_002304926.1| predicted protein [Populus trichocarpa] gi|2...   258   5e-67
ref|XP_003541622.1| PREDICTED: RNA pseudourine synthase 6, chlor...   257   8e-67
ref|XP_002518514.1| ribosomal pseudouridine synthase, putative [...   254   5e-66
ref|XP_004151517.1| PREDICTED: RNA pseudourine synthase 6, chlor...   252   2e-65

>ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic [Vitis
           vinifera] gi|302144082|emb|CBI23187.3| unnamed protein
           product [Vitis vinifera]
          Length = 472

 Score =  265 bits (678), Expect = 2e-69
 Identities = 127/146 (86%), Positives = 139/146 (95%)
 Frame = -1

Query: 440 ENGPPRIEHLVVSEGGPVLDFICKSLDLPPLFVADLIHFGAVYYALVCPKPPLSATPEQI 261
           +NGPPR+EHLVVSEGG VLD+I K+LDLPPLFVADLIHFGAVYYALVCP+PP SATPEQ+
Sbjct: 89  QNGPPRVEHLVVSEGGCVLDYISKALDLPPLFVADLIHFGAVYYALVCPEPPPSATPEQV 148

Query: 260 RLFKEVTSPSVLKKRLSVKGKTVREAQKTFRITHVHEFVEAGTYIRVHVHPKRFPRSYEI 81
           RLFKEVT+PSVL+KR S+KGKT+REAQKTFRIT V+EFVEAGTY+RVHVHPKRFPR YEI
Sbjct: 149 RLFKEVTAPSVLRKRPSIKGKTIREAQKTFRITDVNEFVEAGTYLRVHVHPKRFPRCYEI 208

Query: 80  DWKSRIIAVAESYVVLDKPAGTSVGG 3
           DWKSRIIAV ESYVVLDKPAGTSVGG
Sbjct: 209 DWKSRIIAVTESYVVLDKPAGTSVGG 234


>ref|XP_002304926.1| predicted protein [Populus trichocarpa] gi|222847890|gb|EEE85437.1|
           predicted protein [Populus trichocarpa]
          Length = 470

 Score =  258 bits (658), Expect = 5e-67
 Identities = 122/145 (84%), Positives = 136/145 (93%)
 Frame = -1

Query: 437 NGPPRIEHLVVSEGGPVLDFICKSLDLPPLFVADLIHFGAVYYALVCPKPPLSATPEQIR 258
           N PPRIEHLVVSE GPVLD+ICK+LDLPPLFVADLIHFGAV+YALVCP+PP +ATPEQIR
Sbjct: 84  NSPPRIEHLVVSEEGPVLDYICKALDLPPLFVADLIHFGAVHYALVCPQPPRTATPEQIR 143

Query: 257 LFKEVTSPSVLKKRLSVKGKTVREAQKTFRITHVHEFVEAGTYIRVHVHPKRFPRSYEID 78
           +F+EVT+PSVLKKR S+KGKTVREAQKTFRITHV +F+EAG Y+RVHVHPKRFPR Y+ID
Sbjct: 144 VFEEVTAPSVLKKRASIKGKTVREAQKTFRITHVDQFLEAGMYLRVHVHPKRFPRCYDID 203

Query: 77  WKSRIIAVAESYVVLDKPAGTSVGG 3
           WKSRII V ES+VVLDKPAGTSVGG
Sbjct: 204 WKSRIIHVTESFVVLDKPAGTSVGG 228


>ref|XP_003541622.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine
           max]
          Length = 473

 Score =  257 bits (656), Expect = 8e-67
 Identities = 121/143 (84%), Positives = 135/143 (94%)
 Frame = -1

Query: 431 PPRIEHLVVSEGGPVLDFICKSLDLPPLFVADLIHFGAVYYALVCPKPPLSATPEQIRLF 252
           PPRIEHLV+SEGGPVL+ ICK+LDLPPL+V+DLI FGAVYYALVCP+PP +AT EQIR+F
Sbjct: 92  PPRIEHLVISEGGPVLELICKALDLPPLYVSDLIQFGAVYYALVCPQPPPNATEEQIRVF 151

Query: 251 KEVTSPSVLKKRLSVKGKTVREAQKTFRITHVHEFVEAGTYIRVHVHPKRFPRSYEIDWK 72
           KEVT PSVL+KR S+KGKTVREAQKTFR+THV +FVE GTY+RVHVHPKRFPRSYEIDW+
Sbjct: 152 KEVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQFVEPGTYLRVHVHPKRFPRSYEIDWR 211

Query: 71  SRIIAVAESYVVLDKPAGTSVGG 3
           SRIIAVAESYVVLDKPAGTSVGG
Sbjct: 212 SRIIAVAESYVVLDKPAGTSVGG 234


>ref|XP_002518514.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223542359|gb|EEF43901.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 395

 Score =  254 bits (649), Expect = 5e-66
 Identities = 119/146 (81%), Positives = 136/146 (93%)
 Frame = -1

Query: 440 ENGPPRIEHLVVSEGGPVLDFICKSLDLPPLFVADLIHFGAVYYALVCPKPPLSATPEQI 261
           +N PPR+EHLVV E GPVLD+ICK+LDLPPLFVADLIHFGAV+YALVCP+PP +ATPEQI
Sbjct: 12  QNRPPRVEHLVVLEEGPVLDYICKALDLPPLFVADLIHFGAVHYALVCPQPPPTATPEQI 71

Query: 260 RLFKEVTSPSVLKKRLSVKGKTVREAQKTFRITHVHEFVEAGTYIRVHVHPKRFPRSYEI 81
           RLF+E T+PSVLKKR S+KGKTVREAQKTFR++ VH+F+E GTY+RV+VHP+RFPR YEI
Sbjct: 72  RLFEEFTAPSVLKKRASIKGKTVREAQKTFRVSSVHQFLEVGTYLRVYVHPRRFPRCYEI 131

Query: 80  DWKSRIIAVAESYVVLDKPAGTSVGG 3
           DWKSRIIAV ESYVVLDKPAGTSVGG
Sbjct: 132 DWKSRIIAVTESYVVLDKPAGTSVGG 157


>ref|XP_004151517.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Cucumis
           sativus]
          Length = 475

 Score =  252 bits (644), Expect = 2e-65
 Identities = 119/143 (83%), Positives = 131/143 (91%)
 Frame = -1

Query: 431 PPRIEHLVVSEGGPVLDFICKSLDLPPLFVADLIHFGAVYYALVCPKPPLSATPEQIRLF 252
           PPR+EH+VV E GPV+++ICKSL+LPPL+VADLIHFGAVYYALVCP+PP +ATPEQIRLF
Sbjct: 91  PPRVEHMVVLEAGPVMEYICKSLNLPPLYVADLIHFGAVYYALVCPQPPKTATPEQIRLF 150

Query: 251 KEVTSPSVLKKRLSVKGKTVREAQKTFRITHVHEFVEAGTYIRVHVHPKRFPRSYEIDWK 72
           K+ T PS LK R S+KGKTVREAQKTFRITHV EFVE GTY+RVHVHPKRFPR YEIDWK
Sbjct: 151 KKFTEPSFLKGRKSIKGKTVREAQKTFRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWK 210

Query: 71  SRIIAVAESYVVLDKPAGTSVGG 3
           SRIIAV ESYVVLDKPAGTSVGG
Sbjct: 211 SRIIAVTESYVVLDKPAGTSVGG 233