BLASTX nr result
ID: Coptis24_contig00023939
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00023939
(293 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002309609.1| predicted protein [Populus trichocarpa] gi|2... 113 1e-23
ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containi... 110 2e-22
emb|CBI21003.3| unnamed protein product [Vitis vinifera] 110 2e-22
ref|XP_002515553.1| pentatricopeptide repeat-containing protein,... 105 3e-21
ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containi... 105 5e-21
>ref|XP_002309609.1| predicted protein [Populus trichocarpa] gi|222855585|gb|EEE93132.1|
predicted protein [Populus trichocarpa]
Length = 841
Score = 113 bits (283), Expect = 1e-23
Identities = 53/96 (55%), Positives = 71/96 (73%)
Frame = +2
Query: 2 VGTRLMKGYCVQGNLQSALDIFSEMTESGISPNRVTYAVLIEGCYRNRNVEKAYELYNEM 181
V T LMKGYC QG+L SAL++F +M E+GI PN VTYAV+IE C +N N++KAYE+YN+M
Sbjct: 331 VATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQM 390
Query: 182 RGRGILPSAYTFNSLIRVCLDTHSIEKVDEIFDEAV 289
+ + I P+ + NSLIR L S E+ ++FDEAV
Sbjct: 391 KNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAV 426
Score = 72.0 bits (175), Expect = 5e-11
Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Frame = +2
Query: 14 LMKGYCVQGNLQSALDIFSEMTESGISPNRVTYAVLIEGCYRNRNVEKAYELYNEMRGRG 193
++ G+C QG++ SA +F EM E G+ PN +TY+VL++G ++ + E A+ LY+ MRG
Sbjct: 474 MILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGEN 533
Query: 194 ILPSAYTFNSLIR-VCLDTHSIEKVDEI 274
I PS +T N +I +C + E D +
Sbjct: 534 IAPSDFTCNIIINGLCKAGRTSESQDRL 561
>ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Vitis vinifera]
Length = 877
Score = 110 bits (274), Expect = 2e-22
Identities = 53/96 (55%), Positives = 70/96 (72%)
Frame = +2
Query: 2 VGTRLMKGYCVQGNLQSALDIFSEMTESGISPNRVTYAVLIEGCYRNRNVEKAYELYNEM 181
V T LMKGYC QGNL SAL++F+++TE G+ PN+VTY+VLIEGC + N+EKA ELY +M
Sbjct: 367 VATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQM 426
Query: 182 RGRGILPSAYTFNSLIRVCLDTHSIEKVDEIFDEAV 289
+ GI PS + NSL+R L E+ ++FDEAV
Sbjct: 427 KLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAV 462
Score = 64.7 bits (156), Expect = 8e-09
Identities = 27/72 (37%), Positives = 49/72 (68%)
Frame = +2
Query: 14 LMKGYCVQGNLQSALDIFSEMTESGISPNRVTYAVLIEGCYRNRNVEKAYELYNEMRGRG 193
++ G+C +GN+ A +FS+M + PN VTY++LI+G ++ + EKA +L+++M
Sbjct: 510 MILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLN 569
Query: 194 ILPSAYTFNSLI 229
I P+ +TFN++I
Sbjct: 570 IAPTDFTFNTII 581
Score = 59.7 bits (143), Expect = 2e-07
Identities = 29/93 (31%), Positives = 53/93 (56%)
Frame = +2
Query: 14 LMKGYCVQGNLQSALDIFSEMTESGISPNRVTYAVLIEGCYRNRNVEKAYELYNEMRGRG 193
++ G+ +GN+ SAL ++ EM E G+SPN VTY LI G ++ ++ A + +EMR +G
Sbjct: 615 IVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKG 674
Query: 194 ILPSAYTFNSLIRVCLDTHSIEKVDEIFDEAVK 292
+ +++LI +E ++F E ++
Sbjct: 675 LELDVTAYSALIDGFCKRRDMESAQDLFFELLE 707
>emb|CBI21003.3| unnamed protein product [Vitis vinifera]
Length = 837
Score = 110 bits (274), Expect = 2e-22
Identities = 53/96 (55%), Positives = 70/96 (72%)
Frame = +2
Query: 2 VGTRLMKGYCVQGNLQSALDIFSEMTESGISPNRVTYAVLIEGCYRNRNVEKAYELYNEM 181
V T LMKGYC QGNL SAL++F+++TE G+ PN+VTY+VLIEGC + N+EKA ELY +M
Sbjct: 327 VATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQM 386
Query: 182 RGRGILPSAYTFNSLIRVCLDTHSIEKVDEIFDEAV 289
+ GI PS + NSL+R L E+ ++FDEAV
Sbjct: 387 KLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAV 422
Score = 64.7 bits (156), Expect = 8e-09
Identities = 27/72 (37%), Positives = 49/72 (68%)
Frame = +2
Query: 14 LMKGYCVQGNLQSALDIFSEMTESGISPNRVTYAVLIEGCYRNRNVEKAYELYNEMRGRG 193
++ G+C +GN+ A +FS+M + PN VTY++LI+G ++ + EKA +L+++M
Sbjct: 470 MILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLN 529
Query: 194 ILPSAYTFNSLI 229
I P+ +TFN++I
Sbjct: 530 IAPTDFTFNTII 541
Score = 59.7 bits (143), Expect = 2e-07
Identities = 29/93 (31%), Positives = 53/93 (56%)
Frame = +2
Query: 14 LMKGYCVQGNLQSALDIFSEMTESGISPNRVTYAVLIEGCYRNRNVEKAYELYNEMRGRG 193
++ G+ +GN+ SAL ++ EM E G+SPN VTY LI G ++ ++ A + +EMR +G
Sbjct: 575 IVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKG 634
Query: 194 ILPSAYTFNSLIRVCLDTHSIEKVDEIFDEAVK 292
+ +++LI +E ++F E ++
Sbjct: 635 LELDVTAYSALIDGFCKRRDMESAQDLFFELLE 667
>ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223545497|gb|EEF47002.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 927
Score = 105 bits (263), Expect = 3e-21
Identities = 52/96 (54%), Positives = 67/96 (69%)
Frame = +2
Query: 2 VGTRLMKGYCVQGNLQSALDIFSEMTESGISPNRVTYAVLIEGCYRNRNVEKAYELYNEM 181
V T L+KGYC Q L SAL+ F +M E+G SPNRVTYAVLIE C +N N+ KAY+LY +M
Sbjct: 351 VATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQM 410
Query: 182 RGRGILPSAYTFNSLIRVCLDTHSIEKVDEIFDEAV 289
+ + I P+ + NSLIR L S E+ ++FDEAV
Sbjct: 411 KNKNICPTVFIVNSLIRGFLKVESREEASKLFDEAV 446
Score = 66.6 bits (161), Expect = 2e-09
Identities = 26/69 (37%), Positives = 48/69 (69%)
Frame = +2
Query: 14 LMKGYCVQGNLQSALDIFSEMTESGISPNRVTYAVLIEGCYRNRNVEKAYELYNEMRGRG 193
++ G+C QGNL A +FS+M + G+ PN +TY++L++G ++N + E A+ +++ M
Sbjct: 494 MILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDEN 553
Query: 194 ILPSAYTFN 220
I+PS +T+N
Sbjct: 554 IVPSDFTYN 562
Score = 66.2 bits (160), Expect = 3e-09
Identities = 33/90 (36%), Positives = 50/90 (55%)
Frame = +2
Query: 14 LMKGYCVQGNLQSALDIFSEMTESGISPNRVTYAVLIEGCYRNRNVEKAYELYNEMRGRG 193
+M G+ +G++ SAL + EM ESG+SPN +TY LI G +N N + A ++ NEMR +G
Sbjct: 599 IMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKG 658
Query: 194 ILPSAYTFNSLIRVCLDTHSIEKVDEIFDE 283
+ + +LI IE +F E
Sbjct: 659 LELDIAAYGALIDGFCKKQDIETASWLFSE 688
Score = 58.2 bits (139), Expect = 7e-07
Identities = 28/74 (37%), Positives = 46/74 (62%)
Frame = +2
Query: 8 TRLMKGYCVQGNLQSALDIFSEMTESGISPNRVTYAVLIEGCYRNRNVEKAYELYNEMRG 187
T L+ G C +G L++A I +EM I+PN Y LI G ++ N+++A+ L+NEM
Sbjct: 772 TVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLD 831
Query: 188 RGILPSAYTFNSLI 229
+G+ P+ T++ LI
Sbjct: 832 KGLTPNDTTYDILI 845
>ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Cucumis sativus]
Length = 657
Score = 105 bits (261), Expect = 5e-21
Identities = 48/97 (49%), Positives = 73/97 (75%)
Frame = +2
Query: 2 VGTRLMKGYCVQGNLQSALDIFSEMTESGISPNRVTYAVLIEGCYRNRNVEKAYELYNEM 181
V T LMKGYC+QGNL+SAL + +E++ESG+ PN+VTY+VLI+GC +N N+EKA+E Y+EM
Sbjct: 147 VATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEM 206
Query: 182 RGRGILPSAYTFNSLIRVCLDTHSIEKVDEIFDEAVK 292
+ +GI S Y+ NS++ L S + +F++A++
Sbjct: 207 KTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALE 243
Score = 64.7 bits (156), Expect = 8e-09
Identities = 28/94 (29%), Positives = 57/94 (60%)
Frame = +2
Query: 8 TRLMKGYCVQGNLQSALDIFSEMTESGISPNRVTYAVLIEGCYRNRNVEKAYELYNEMRG 187
T L+ G+C N+ AL + ++M G+ + Y LI+G + R+++ A+EL NE+RG
Sbjct: 428 TSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRG 487
Query: 188 RGILPSAYTFNSLIRVCLDTHSIEKVDEIFDEAV 289
G+ P+ + +NS+I + +++E+ +++ + V
Sbjct: 488 AGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMV 521
Score = 60.1 bits (144), Expect = 2e-07
Identities = 25/86 (29%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +2
Query: 14 LMKGYCVQGNLQSALDIFSEMTESGISPNRVTYAVLIEGCYRNRNVEKAYELYNEMRGRG 193
++ G+C + N+ +A ++ EM ++G +PN VT+ +L++G ++ ++E A+ +++ M+
Sbjct: 290 IILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDAN 349
Query: 194 ILPSAYTFNSLIR-VCLDTHSIEKVD 268
ILP+ T +I+ +C S E D
Sbjct: 350 ILPTDTTLGIIIKGLCKAGRSFEGRD 375
Score = 57.0 bits (136), Expect = 2e-06
Identities = 26/90 (28%), Positives = 51/90 (56%)
Frame = +2
Query: 14 LMKGYCVQGNLQSALDIFSEMTESGISPNRVTYAVLIEGCYRNRNVEKAYELYNEMRGRG 193
++ G+ +GN+ A +++ EM E GI+P+ VTY LI+G + N++ A +L N+M+ +G
Sbjct: 395 IIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKG 454
Query: 194 ILPSAYTFNSLIRVCLDTHSIEKVDEIFDE 283
+ + +LI ++ E+ +E
Sbjct: 455 LKMDIKAYGTLIDGFCKRRDMKSAHELLNE 484
Score = 55.1 bits (131), Expect = 6e-06
Identities = 30/90 (33%), Positives = 50/90 (55%)
Frame = +2
Query: 14 LMKGYCVQGNLQSALDIFSEMTESGISPNRVTYAVLIEGCYRNRNVEKAYELYNEMRGRG 193
L+ G+C + +++SA ++ +E+ +G+SPNR Y +I G NVE+A +LY +M G
Sbjct: 465 LIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEG 524
Query: 194 ILPSAYTFNSLIRVCLDTHSIEKVDEIFDE 283
I T+ SLI L + + +I E
Sbjct: 525 IPCDLKTYTSLIDGLLKSGRLLYASDIHTE 554
Score = 54.7 bits (130), Expect = 8e-06
Identities = 30/88 (34%), Positives = 44/88 (50%)
Frame = +2
Query: 14 LMKGYCVQGNLQSALDIFSEMTESGISPNRVTYAVLIEGCYRNRNVEKAYELYNEMRGRG 193
L+ C +G + A +++ E+ GISPN V+Y +I G R N+ A ++Y EM G
Sbjct: 255 LLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNG 314
Query: 194 ILPSAYTFNSLIRVCLDTHSIEKVDEIF 277
P+A TF L+ IE IF
Sbjct: 315 FTPNAVTFTILMDGYFKKGDIENAFSIF 342