BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023938
         (378 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI26396.3| unnamed protein product [Vitis vinifera]              149   2e-34
ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containi...   142   4e-32
ref|XP_002525669.1| pentatricopeptide repeat-containing protein,...   131   5e-29
ref|XP_002331415.1| predicted protein [Populus trichocarpa] gi|2...   126   2e-27
ref|XP_004137641.1| PREDICTED: pentatricopeptide repeat-containi...   118   4e-25

>emb|CBI26396.3| unnamed protein product [Vitis vinifera]
          Length = 667

 Score =  149 bits (377), Expect = 2e-34
 Identities = 72/125 (57%), Positives = 91/125 (72%)
 Frame = -3

Query: 376 GCHHHNSVQNSLVNMYPKCGDLVSARRIFHLVKDKSTLLWTSLISGYAQLGNPSEAVNLF 197
           G  H + + N LV MY KC DLVSARR+F  V +KS  LWTS+ISGYAQ G P+EA++LF
Sbjct: 256 GFDHKDPIDNLLVAMYAKCKDLVSARRVFDAVHEKSVFLWTSMISGYAQFGYPNEALHLF 315

Query: 196 KHMTRTSTRPNEITLATVISACADXXXXXXXXXXXEYATLNGLCSDLRIQTSLIHMYCKC 17
             + RT++RPNE+TLATV+SACA+           +Y  LNGL SDLR+QTSLIHM+CKC
Sbjct: 316 NMLLRTASRPNELTLATVLSACAEMGSLRMGEEIEQYILLNGLGSDLRVQTSLIHMFCKC 375

Query: 16  GSFER 2
           GS ++
Sbjct: 376 GSIKK 380



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
 Frame = -3

Query: 355 VQNSLVNMYPKCGDLVSARRIFHLVKDKSTLLWTSLISGYAQLGNPSEAVNLF-KHMTRT 179
           VQ SL++M+ KCG +  A+ +F  + +K   +W+++I+GYA  G   EA+NLF K     
Sbjct: 364 VQTSLIHMFCKCGSIKKAQALFERIPNKDLAVWSAMINGYAVHGMGKEALNLFHKMQNEV 423

Query: 178 STRPNEITLATVISACA 128
             +P+ I   +V+ AC+
Sbjct: 424 GIKPDAIVYTSVLLACS 440


>ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 615

 Score =  142 bits (357), Expect = 4e-32
 Identities = 70/122 (57%), Positives = 86/122 (70%)
 Frame = -3

Query: 376 GCHHHNSVQNSLVNMYPKCGDLVSARRIFHLVKDKSTLLWTSLISGYAQLGNPSEAVNLF 197
           GC+  + V+N L+ MY KCG+L SARRIF L+ +KS L WTS+I+GY  LG+P EA++LF
Sbjct: 282 GCNEKDPVENLLITMYAKCGNLTSARRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLF 341

Query: 196 KHMTRTSTRPNEITLATVISACADXXXXXXXXXXXEYATLNGLCSDLRIQTSLIHMYCKC 17
           + M RT  RPN  TLATV+SACAD           EY  LNGL SD ++QTSLIHMY KC
Sbjct: 342 RRMIRTDIRPNGATLATVVSACADLGSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKC 401

Query: 16  GS 11
           GS
Sbjct: 402 GS 403



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
 Frame = -3

Query: 376 GCHHHNSVQNSLVNMYPKCGDLVSARRIFHLVKDKSTLLWTSLISGYAQLGNPSEAVNLF 197
           G      VQ SL++MY KCG +V AR +F  V DK   +WTS+I+ YA  G  +EA++LF
Sbjct: 383 GLESDQQVQTSLIHMYSKCGSIVKAREVFERVTDKDLTVWTSMINSYAIHGMGNEAISLF 442

Query: 196 KHMTRT-STRPNEITLATVISACA 128
             MT      P+ I   +V  AC+
Sbjct: 443 HKMTTAEGIMPDAIVYTSVFLACS 466



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 35/116 (30%), Positives = 55/116 (47%)
 Frame = -3

Query: 358 SVQNSLVNMYPKCGDLVSARRIFHLVKDKSTLLWTSLISGYAQLGNPSEAVNLFKHMTRT 179
           S+ NSL+ MY +   +  AR++F L+ +KS + WT++I GY ++G+  EA  LF  M   
Sbjct: 187 SLANSLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQ 246

Query: 178 STRPNEITLATVISACADXXXXXXXXXXXEYATLNGLCSDLRIQTSLIHMYCKCGS 11
           S   + +    +IS C                   G      ++  LI MY KCG+
Sbjct: 247 SVGIDFVVFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGN 302


>ref|XP_002525669.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535105|gb|EEF36787.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 494

 Score =  131 bits (330), Expect = 5e-29
 Identities = 61/125 (48%), Positives = 83/125 (66%)
 Frame = -3

Query: 376 GCHHHNSVQNSLVNMYPKCGDLVSARRIFHLVKDKSTLLWTSLISGYAQLGNPSEAVNLF 197
           GC   + + N LV MY KCGDL+SA+R F + ++KS  LWTS+I+ Y  LG P +A+ LF
Sbjct: 278 GCDDKDPIDNLLVTMYSKCGDLISAQRAFDIAREKSLYLWTSMIAAYTHLGYPVQALRLF 337

Query: 196 KHMTRTSTRPNEITLATVISACADXXXXXXXXXXXEYATLNGLCSDLRIQTSLIHMYCKC 17
             +  T+ +PNE TLAT++SACAD           EY   NGL S +++QTSLIHM+C+C
Sbjct: 338 NTLLGTAIKPNEATLATILSACADLGSLSMGEEIEEYILANGLHSSVQVQTSLIHMFCRC 397

Query: 16  GSFER 2
           GS E+
Sbjct: 398 GSLEK 402



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 41/112 (36%), Positives = 55/112 (49%)
 Frame = -3

Query: 349 NSLVNMYPKCGDLVSARRIFHLVKDKSTLLWTSLISGYAQLGNPSEAVNLFKHMTRTSTR 170
           N+L+NMY K G +  AR +F ++ +KS + WT++I GY   GN  EA +LF  M R S R
Sbjct: 187 NALLNMYVKHGQVHEARTLFDMMHEKSLISWTTVIGGYVDFGNVREAFSLFNQM-RISMR 245

Query: 169 PNEITLATVISACADXXXXXXXXXXXEYATLNGLCSDLRIQTSLIHMYCKCG 14
            + I   T+IS CA                  G      I   L+ MY KCG
Sbjct: 246 LDFIVFITLISGCAREGNLLLASSVHSLLVKYGCDDKDPIDNLLVTMYSKCG 297



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 34/117 (29%), Positives = 57/117 (48%)
 Frame = -3

Query: 364 HNSVQNSLVNMYPKCGDLVSARRIFHLVKDKSTLLWTSLISGYAQLGNPSEAVNLFKHMT 185
           H  V  +L++MY KC DL S+R++F  +  +ST+ W S+IS Y +     EA+++ + M 
Sbjct: 83  HVFVMTTLLDMYSKCYDLASSRKVFDEMPMRSTVSWNSIISAYCRFFLVDEAISMLQKMR 142

Query: 184 RTSTRPNEITLATVISACADXXXXXXXXXXXEYATLNGLCSDLRIQTSLIHMYCKCG 14
                P   T    +  C             ++  L G  SD+ +  +L++MY K G
Sbjct: 143 LIGFVPTSTTFLCFLPICLLQHGLSIQCCAFKFGLLEG--SDIPLTNALLNMYVKHG 197



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
 Frame = -3

Query: 376 GCHHHNSVQNSLVNMYPKCGDLVSARRIFHLVKDKSTLLWTSLISGYAQLGNPSEAVNLF 197
           G H    VQ SL++M+ +CG L  A+ +F  +  K    W+S+I+GYA  G   EA +LF
Sbjct: 379 GLHSSVQVQTSLIHMFCRCGSLEKAKAVFERLATKDLAAWSSMINGYAIHGMAEEAFSLF 438

Query: 196 -KHMTRTSTRPNEITLATVISACA 128
            K  T    +P+ +   +++ AC+
Sbjct: 439 HKMQTVEGIKPDAVIYTSILLACS 462


>ref|XP_002331415.1| predicted protein [Populus trichocarpa] gi|222873629|gb|EEF10760.1|
           predicted protein [Populus trichocarpa]
          Length = 458

 Score =  126 bits (316), Expect = 2e-27
 Identities = 59/122 (48%), Positives = 81/122 (66%)
 Frame = -3

Query: 376 GCHHHNSVQNSLVNMYPKCGDLVSARRIFHLVKDKSTLLWTSLISGYAQLGNPSEAVNLF 197
           GC + + + N L+ MY KCGDL+SAR++F +   K+  LWTS+I GY  +G P+EA+ LF
Sbjct: 14  GCENKDPLDNLLLGMYAKCGDLISARKVFDMALVKTVFLWTSIIGGYTHMGYPAEALLLF 73

Query: 196 KHMTRTSTRPNEITLATVISACADXXXXXXXXXXXEYATLNGLCSDLRIQTSLIHMYCKC 17
           K + +T+ +PN  TLAT++SACAD           EY   NG  SD ++QTSLIHM+ KC
Sbjct: 74  KKLLKTAIKPNGATLATILSACADLGSLDMGKEIEEYILSNGFQSDRQVQTSLIHMFSKC 133

Query: 16  GS 11
           GS
Sbjct: 134 GS 135



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = -3

Query: 376 GCHHHNSVQNSLVNMYPKCGDLVSARRIFHLVKDKSTLLWTSLISGYAQLGNPSEAVNLF 197
           G      VQ SL++M+ KCG +  A  +F  + DK    W+S+I+GYA  G   EA+ LF
Sbjct: 115 GFQSDRQVQTSLIHMFSKCGSIGKAISVFERISDKDLAAWSSMINGYAIHGMAEEALGLF 174

Query: 196 KHMTR-TSTRPNEITLATVISACA 128
             M      +P+ +   +++ AC+
Sbjct: 175 HKMLEIKEIKPDAVVFTSILLACS 198


>ref|XP_004137641.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
           gi|449514868|ref|XP_004164502.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 601

 Score =  118 bits (296), Expect = 4e-25
 Identities = 58/125 (46%), Positives = 78/125 (62%)
 Frame = -3

Query: 376 GCHHHNSVQNSLVNMYPKCGDLVSARRIFHLVKDKSTLLWTSLISGYAQLGNPSEAVNLF 197
           G  + + +   L++MY KCGDL+SAR +F L+ +KS   WTS+ISGYA  G P EA++LF
Sbjct: 287 GLKYEDPIGCLLISMYSKCGDLLSARAVFDLLSEKSIYSWTSMISGYANAGYPREALSLF 346

Query: 196 KHMTRTSTRPNEITLATVISACADXXXXXXXXXXXEYATLNGLCSDLRIQTSLIHMYCKC 17
              T+ + RPN   LAT ISACAD            +   +GL SD ++ TSLIH+YCK 
Sbjct: 347 SMATQNNVRPNGAMLATAISACADLGSLSMRREIEAFIQQDGLASDSQVSTSLIHLYCKF 406

Query: 16  GSFER 2
           GS E+
Sbjct: 407 GSIEK 411



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
 Frame = -3

Query: 355 VQNSLVNMYPKCGDLVSARRIFHLVKDKSTLLWTSLISGYAQLGNPSEAVNLFKHMTRTS 176
           VQ SLV+MY K  +L ++R++F     +S + W S+I+ Y++    +EA+ LF+ M    
Sbjct: 90  VQTSLVDMYSKFSNLRASRQVFDETSTRSVISWNSMIAAYSRSFRVNEALKLFREMLGGG 149

Query: 175 TRPNEITLATVISACADXXXXXXXXXXXEYATLN--GLCSDLRIQTSLIHMYCKCGSFE 5
             PN  T  +++S  AD            +  L    L  D  ++ SL+ MY   G  +
Sbjct: 150 FEPNSSTFVSLLSGFADPTHGSLFQGRLLHGCLTKFQLHDDTPVENSLVQMYVNFGQID 208



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 33/119 (27%), Positives = 53/119 (44%)
 Frame = -3

Query: 370 HHHNSVQNSLVNMYPKCGDLVSARRIFHLVKDKSTLLWTSLISGYAQLGNPSEAVNLFKH 191
           H    V+NSLV MY   G + SA  +F+ + +K+ + WT ++ GY + G  ++    F  
Sbjct: 188 HDDTPVENSLVQMYVNFGQIDSACSVFYAISEKTVISWTIMLGGYLKAGAVAKVFETFSQ 247

Query: 190 MTRTSTRPNEITLATVISACADXXXXXXXXXXXEYATLNGLCSDLRIQTSLIHMYCKCG 14
           M + +   ++     +IS+C                   GL  +  I   LI MY KCG
Sbjct: 248 MRQNNVVLDKFVFVDIISSCIQLGNLFLGSSLHSLLLKTGLKYEDPIGCLLISMYSKCG 306



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 24/83 (28%), Positives = 47/83 (56%)
 Frame = -3

Query: 376 GCHHHNSVQNSLVNMYPKCGDLVSARRIFHLVKDKSTLLWTSLISGYAQLGNPSEAVNLF 197
           G    + V  SL+++Y K G +  A ++F+ +  +    W+S+++GYA  G   + +NLF
Sbjct: 388 GLASDSQVSTSLIHLYCKFGSIEKAEKVFNSMIHRDLAAWSSMMNGYAVHGMGEKTMNLF 447

Query: 196 KHMTRTSTRPNEITLATVISACA 128
             M R+  +P+    A+++ AC+
Sbjct: 448 HEMQRSGIKPDGSVYASILLACS 470