BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023908
         (984 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002329076.1| predicted protein [Populus trichocarpa] gi|2...    82   2e-13
ref|XP_002326594.1| predicted protein [Populus trichocarpa] gi|2...    79   2e-12
ref|XP_003621455.1| F-box protein [Medicago truncatula] gi|35549...    78   3e-12
ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vi...    76   1e-11
ref|XP_003610528.1| F-box family protein [Medicago truncatula] g...    73   9e-11

>ref|XP_002329076.1| predicted protein [Populus trichocarpa] gi|222869745|gb|EEF06876.1|
           predicted protein [Populus trichocarpa]
          Length = 419

 Score = 82.0 bits (201), Expect = 2e-13
 Identities = 53/164 (32%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
 Frame = +1

Query: 28  QVHTLGSTIWRRMNGVVPDVLRLANETVSVFVHKCLHWVAMDKISGNGVPVIVLFNLAVD 207
           +++T+G+  WRR+   +  + +L  +T    VH  +HW+   KI    +  I  FN   +
Sbjct: 193 EIYTIGTKKWRRIGNPLSCIEKLDFDTS---VHGYIHWIPDQKI----LQFICSFNFGKE 245

Query: 208 EFGSVPTPGSHLFKPAKGCYSLGVLEGNLSVV---ECTSESNVGIWVMKKYGVKESWVKQ 378
           +FG +P P ++    A+    LGVL+  L V    +  S    GIWVMKKYG+K+SW++Q
Sbjct: 246 QFGQLPLPPTYDGNDAR--VKLGVLKDCLCVSVPEKVGSVDKFGIWVMKKYGIKQSWIQQ 303

Query: 379 FSVEHDSLCRRGFRCENVEIIQLCQSGDLLLLCDAEYLVSYNIT 510
           + +E  +L     R +  E +    +G++L+  + E+LV YN T
Sbjct: 304 YVIE--NLYPDVGRLKFYEPLIFLSTGEILISFNGEFLVCYNTT 345


>ref|XP_002326594.1| predicted protein [Populus trichocarpa] gi|222833916|gb|EEE72393.1|
           predicted protein [Populus trichocarpa]
          Length = 477

 Score = 79.0 bits (193), Expect = 2e-12
 Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 3/178 (1%)
 Frame = +1

Query: 28  QVHTLGSTIWRRMNGVV---PDVLRLANETVSVFVHKCLHWVAMDKISGNGVPVIVLFNL 198
           ++HTLG   W  ++G     P  +R  N     FV  CLHW+  D      +  +     
Sbjct: 202 EIHTLGKGTWTSIHGGALSPPIDMRCHN----AFVGGCLHWIVNDPSKSEFIYCLEFGRE 257

Query: 199 AVDEFGSVPTPGSHLFKPAKGCYSLGVLEGNLSVVECTSESNVGIWVMKKYGVKESWVKQ 378
                 + P  G +  K   G   LGVL G L   +     +  IWVMK+YGV+ESW K+
Sbjct: 258 LFQPVAAPPHLGPN-DKDRTGDMMLGVLGGCLYFFDYPLGDSFDIWVMKQYGVQESWTKE 316

Query: 379 FSVEHDSLCRRGFRCENVEIIQLCQSGDLLLLCDAEYLVSYNITNRNCRFLEVEGVQN 552
           F +++ S     +  +    I L  +G++L+   ++ +VSYN  +R+ RFL++ G+QN
Sbjct: 317 FILKNPSTDIIWY-WDLYRPISLLSNGEILMSHKSKAMVSYNPEDRSFRFLKIYGIQN 373


>ref|XP_003621455.1| F-box protein [Medicago truncatula] gi|355496470|gb|AES77673.1|
           F-box protein [Medicago truncatula]
          Length = 404

 Score = 78.2 bits (191), Expect = 3e-12
 Identities = 54/173 (31%), Positives = 85/173 (49%)
 Frame = +1

Query: 25  VQVHTLGSTIWRRMNGVVPDVLRLANETVSVFVHKCLHWVAMDKISGNGVPVIVLFNLAV 204
           V+VHTLG+  WRR+     +++ L N  V  FV   ++W A++        VI+  +L  
Sbjct: 207 VRVHTLGTNFWRRIPNFPSNIMGLPNGYVGKFVSGTINW-AIENQKNYDSWVILSLDLGN 265

Query: 205 DEFGSVPTPGSHLFKPAKGCYSLGVLEGNLSVVECTSESNVGIWVMKKYGVKESWVKQFS 384
           + +  +  P   L  P    ++LGV +  L V+  T E+ +GIWVMK YG K SW K F+
Sbjct: 266 ESYQEISRPDFGLDDPVH-IFTLGVSKDCLCVLVYT-ETLLGIWVMKDYGNKNSWTKLFA 323

Query: 385 VEHDSLCRRGFRCENVEIIQLCQSGDLLLLCDAEYLVSYNITNRNCRFLEVEG 543
           V +  +   GF   ++  I        L  C   Y+  YN  N   + L+++G
Sbjct: 324 VPYAKVGYHGFGFVDLHYISEEDDQVFLHFCSKVYV--YNYKNSTVKTLDIQG 374


>ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vinifera]
           gi|147785390|emb|CAN68678.1| hypothetical protein
           VITISV_041941 [Vitis vinifera]
          Length = 409

 Score = 76.3 bits (186), Expect = 1e-11
 Identities = 59/189 (31%), Positives = 88/189 (46%), Gaps = 13/189 (6%)
 Frame = +1

Query: 25  VQVHTLGSTIWRRMNGVVPDVLRLANETVSVFVHKCLHWVAMDKISGNGVPVIVLFNLAV 204
           VQV TLGS  WR +  V   + R  +E +   V+  LHWV   +        IV F+LA 
Sbjct: 208 VQVLTLGSPTWRSLGKVSYQLDRWPSEAL---VNGRLHWVTRPR--RYVTRFIVSFDLAD 262

Query: 205 DEFGSVPTPGSHLFKPAKGCYSLGVLEGNLSVVECTSESNVGIWVMKKYGVKESWVKQFS 384
           ++F  +P P           Y L VL G LS     S   + +WVMK+Y VKESW+K+F+
Sbjct: 263 EQFREIPKPDCGGLSRCN--YHLLVLGGCLSAAVHRSNGKLEVWVMKEYDVKESWIKEFN 320

Query: 385 V-------------EHDSLCRRGFRCENVEIIQLCQSGDLLLLCDAEYLVSYNITNRNCR 525
           +                 + R   +   V ++ L ++G++LL      LVSYN      +
Sbjct: 321 IGAHLPKGLKQDVNRPHRIWRNAPKGRGVRLLCLLKNGEILLEYKGRVLVSYNPERGKFK 380

Query: 526 FLEVEGVQN 552
            L ++G+ N
Sbjct: 381 DLTLKGLPN 389


>ref|XP_003610528.1| F-box family protein [Medicago truncatula]
           gi|355511583|gb|AES92725.1| F-box family protein
           [Medicago truncatula]
          Length = 392

 Score = 73.2 bits (178), Expect = 9e-11
 Identities = 47/181 (25%), Positives = 92/181 (50%), Gaps = 1/181 (0%)
 Frame = +1

Query: 13  YENIVQVHTLGSTIWRRMNGVVPDVLRLANETVSVFVHKCLHWVAMDKISGNGVPVIVLF 192
           +++ V+++T+ + +W+ +  + P  L  A  T+ VFV   LHWV    +      +IV F
Sbjct: 170 FDSHVKIYTMRTDVWKTLPSM-PYALCCAR-TMGVFVSGALHWVVTRDLEPESRDLIVAF 227

Query: 193 NLAVDEFGSVPTPGSHLFKPAKGCYSLGVLEGNLSVVECTSESNVGIWVMKKYGVKESWV 372
           +L  + F  V  PG+      K    + +L G L ++E        +WVM++YG  +SW 
Sbjct: 228 DLRFEVFREVALPGT---VDGKFDMDVALLRGMLCIIENRGSDGFDVWVMREYGSHDSWC 284

Query: 373 KQFSVEHDSLCRRGFRCENVEIIQLCQSGDLLLL-CDAEYLVSYNITNRNCRFLEVEGVQ 549
           K F+V      R     ++++ +   ++GD +L   D++ L  YN+ +++  ++ + G+ 
Sbjct: 285 KMFTVGQP---RDVKLMKSLKPLGYSRNGDKVLFEQDSKKLCWYNLASKDVSWVRISGIP 341

Query: 550 N 552
           N
Sbjct: 342 N 342