BLASTX nr result
ID: Coptis24_contig00023903
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00023903
(1074 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera] 227 4e-57
ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containi... 226 7e-57
emb|CBI18522.3| unnamed protein product [Vitis vinifera] 222 1e-55
ref|XP_004163031.1| PREDICTED: pentatricopeptide repeat-containi... 199 7e-49
ref|XP_004148334.1| PREDICTED: pentatricopeptide repeat-containi... 199 7e-49
>emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]
Length = 993
Score = 227 bits (578), Expect = 4e-57
Identities = 126/286 (44%), Positives = 175/286 (61%), Gaps = 7/286 (2%)
Frame = -2
Query: 1070 PTVMTYGTLISALSKVGYFNNSKQLFEKMVRAGISPHTHLYNSLIDGYCKFGXXXXXXXX 891
P+ +TY TLI +L K G ++KQLFEKMV G +P+ +YNSLIDGYCKFG
Sbjct: 707 PSEITYATLIDSLCKEGCLLDAKQLFEKMVXKGFNPNVRVYNSLIDGYCKFGNMEEALNL 766
Query: 890 XXXXXXXXXKPDAFTVSAVINGFCRKGDMEGALTFYYESKRKDILPDFSGFVCIVKGLSI 711
KPD FTVSA+ING+C KGDMEGAL F++E K+KDILPDF GF+ +V+GL
Sbjct: 767 LIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFFFEFKKKDILPDFLGFMYLVRGLCA 826
Query: 710 KGRMEEARSILKEMLEISSNIDLINRAGDEKETESLASILISLCEQGNIEQATSIIGEVG 531
KGRMEEAR IL+EML+ S ++LINR E ETES+ S +ISLCEQG+I++A +++ EVG
Sbjct: 827 KGRMEEARGILREMLQTRSVLELINRVDTEIETESVESFIISLCEQGSIQEAVTVLNEVG 886
Query: 530 SVAFSSKKRYXXXXXXXXXXXXS-------MFTRNSLYAYMGSLGMRFPDLLKMRSSFEE 372
S+ F +R + +++S + L + ++ K+ ++
Sbjct: 887 SIFFPIGRRCRPQNRAEKEEKIYEGVTFGAVSSKHSSLNHKMDLDVGLSNVKKVEMVVDD 946
Query: 371 SDCFSIQPIPLDFSACYSLVSSLCSEGKLDKANEVVQEMLLNTTKG 234
D DF + YSL++SLCS G+L +AN ++MLL+ G
Sbjct: 947 YDNSEKGSRVPDFESYYSLIASLCSRGELLEANRKTRQMLLDMDTG 992
Score = 65.9 bits (159), Expect = 2e-08
Identities = 36/133 (27%), Positives = 60/133 (45%)
Frame = -2
Query: 1073 APTVMTYGTLISALSKVGYFNNSKQLFEKMVRAGISPHTHLYNSLIDGYCKFGXXXXXXX 894
AP ++Y LI S+ GY + EKM + G+ P+ Y +++ G+CK G
Sbjct: 190 APDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYT 249
Query: 893 XXXXXXXXXXKPDAFTVSAVINGFCRKGDMEGALTFYYESKRKDILPDFSGFVCIVKGLS 714
+ D F +I+GFC +GD++ + +++ I P + I+ GL
Sbjct: 250 LFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLC 309
Query: 713 IKGRMEEARSILK 675
GR EA + K
Sbjct: 310 KAGRTSEADEVSK 322
Score = 57.8 bits (138), Expect = 5e-06
Identities = 40/173 (23%), Positives = 75/173 (43%)
Frame = -2
Query: 1064 VMTYGTLISALSKVGYFNNSKQLFEKMVRAGISPHTHLYNSLIDGYCKFGXXXXXXXXXX 885
V+ Y + I + G + + ++M+ GI+P T Y LIDG+ + G
Sbjct: 158 VVFYSSWICGYFREGVLVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLE 217
Query: 884 XXXXXXXKPDAFTVSAVINGFCRKGDMEGALTFYYESKRKDILPDFSGFVCIVKGLSIKG 705
KP+ T +A++ GFC+KG ++ A T + + I D +V ++ G +G
Sbjct: 218 KMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTRG 277
Query: 704 RMEEARSILKEMLEISSNIDLINRAGDEKETESLASILISLCEQGNIEQATSI 546
++ +L++M + G + SI+ LC+ G +A +
Sbjct: 278 DIDCVFGLLEDM----------EKRGISPSIVTYNSIINGLCKAGRTSEADEV 320
Score = 57.0 bits (136), Expect = 8e-06
Identities = 39/170 (22%), Positives = 72/170 (42%)
Frame = -2
Query: 1070 PTVMTYGTLISALSKVGYFNNSKQLFEKMVRAGISPHTHLYNSLIDGYCKFGXXXXXXXX 891
P + T L+ AL ++G L M R Y+S I GY + G
Sbjct: 121 PNIATCTALLGALFQLGRVREVSDLVSWMEREEFVFDVVFYSSWICGYFREGVLVEAIRK 180
Query: 890 XXXXXXXXXKPDAFTVSAVINGFCRKGDMEGALTFYYESKRKDILPDFSGFVCIVKGLSI 711
PD + + +I+GF R+G +E A+ F + K+ + P+ + I+ G
Sbjct: 181 HKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCK 240
Query: 710 KGRMEEARSILKEMLEISSNIDLINRAGDEKETESLASILISLCEQGNIE 561
KG+++EA ++ K ++ G E + +++ C +G+I+
Sbjct: 241 KGKLDEAYTLFK----------MVENLGIEVDEFMYVTLIDGFCTRGDID 280
>ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
mitochondrial-like [Vitis vinifera]
Length = 993
Score = 226 bits (576), Expect = 7e-57
Identities = 126/286 (44%), Positives = 175/286 (61%), Gaps = 7/286 (2%)
Frame = -2
Query: 1070 PTVMTYGTLISALSKVGYFNNSKQLFEKMVRAGISPHTHLYNSLIDGYCKFGXXXXXXXX 891
P+ +TY TLI +L K G ++KQLFEKMV G +P+ +YNSLIDGYCKFG
Sbjct: 707 PSEITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNSLIDGYCKFGNMEEALNL 766
Query: 890 XXXXXXXXXKPDAFTVSAVINGFCRKGDMEGALTFYYESKRKDILPDFSGFVCIVKGLSI 711
KPD FTVSA+ING+C KGDMEGAL F++E K+KDILPDF GF+ +V+GL
Sbjct: 767 LIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFFFEFKKKDILPDFLGFMYLVRGLCA 826
Query: 710 KGRMEEARSILKEMLEISSNIDLINRAGDEKETESLASILISLCEQGNIEQATSIIGEVG 531
KGRMEEAR IL+EML+ S ++LINR E ETES+ S +ISLCEQG+I++A +++ EVG
Sbjct: 827 KGRMEEARGILREMLQTRSVLELINRVDTEIETESVESFIISLCEQGSIQEAVTVLNEVG 886
Query: 530 SVAFSSKKRYXXXXXXXXXXXXS-------MFTRNSLYAYMGSLGMRFPDLLKMRSSFEE 372
S+ F +R + +++S + L + ++ K+ ++
Sbjct: 887 SIFFPIGRRCRPQNRAEKEEKIYEGVTFGAVSSKHSSLNHKMDLDVGLSNVKKVEMVVDD 946
Query: 371 SDCFSIQPIPLDFSACYSLVSSLCSEGKLDKANEVVQEMLLNTTKG 234
D DF + YSL++SLCS G+L +AN ++MLL+ G
Sbjct: 947 YDNSEKGSRVPDFESYYSLIASLCSRGELLEANRKTRQMLLDMDTG 992
Score = 65.9 bits (159), Expect = 2e-08
Identities = 36/133 (27%), Positives = 60/133 (45%)
Frame = -2
Query: 1073 APTVMTYGTLISALSKVGYFNNSKQLFEKMVRAGISPHTHLYNSLIDGYCKFGXXXXXXX 894
AP ++Y LI S+ GY + EKM + G+ P+ Y +++ G+CK G
Sbjct: 190 APDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYT 249
Query: 893 XXXXXXXXXXKPDAFTVSAVINGFCRKGDMEGALTFYYESKRKDILPDFSGFVCIVKGLS 714
+ D F +I+GFC +GD++ + +++ I P + I+ GL
Sbjct: 250 LFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLC 309
Query: 713 IKGRMEEARSILK 675
GR EA + K
Sbjct: 310 KAGRTSEADEVSK 322
Score = 57.8 bits (138), Expect = 5e-06
Identities = 40/173 (23%), Positives = 75/173 (43%)
Frame = -2
Query: 1064 VMTYGTLISALSKVGYFNNSKQLFEKMVRAGISPHTHLYNSLIDGYCKFGXXXXXXXXXX 885
V+ Y + I + G + + ++M+ GI+P T Y LIDG+ + G
Sbjct: 158 VVFYSSWICGYFREGVLVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLE 217
Query: 884 XXXXXXXKPDAFTVSAVINGFCRKGDMEGALTFYYESKRKDILPDFSGFVCIVKGLSIKG 705
KP+ T +A++ GFC+KG ++ A T + + I D +V ++ G +G
Sbjct: 218 KMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTRG 277
Query: 704 RMEEARSILKEMLEISSNIDLINRAGDEKETESLASILISLCEQGNIEQATSI 546
++ +L++M + G + SI+ LC+ G +A +
Sbjct: 278 DIDCVFGLLEDM----------EKRGISPSIVTYNSIINGLCKAGRTSEADEV 320
Score = 57.0 bits (136), Expect = 8e-06
Identities = 39/170 (22%), Positives = 72/170 (42%)
Frame = -2
Query: 1070 PTVMTYGTLISALSKVGYFNNSKQLFEKMVRAGISPHTHLYNSLIDGYCKFGXXXXXXXX 891
P + T L+ AL ++G L M R Y+S I GY + G
Sbjct: 121 PNIATCTALLGALFQLGRVREVSDLVSWMEREEFVFDVVFYSSWICGYFREGVLVEAIRK 180
Query: 890 XXXXXXXXXKPDAFTVSAVINGFCRKGDMEGALTFYYESKRKDILPDFSGFVCIVKGLSI 711
PD + + +I+GF R+G +E A+ F + K+ + P+ + I+ G
Sbjct: 181 HKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCK 240
Query: 710 KGRMEEARSILKEMLEISSNIDLINRAGDEKETESLASILISLCEQGNIE 561
KG+++EA ++ K ++ G E + +++ C +G+I+
Sbjct: 241 KGKLDEAYTLFK----------MVENLGIEVDEFMYVTLIDGFCTRGDID 280
>emb|CBI18522.3| unnamed protein product [Vitis vinifera]
Length = 808
Score = 222 bits (566), Expect = 1e-55
Identities = 127/279 (45%), Positives = 166/279 (59%)
Frame = -2
Query: 1070 PTVMTYGTLISALSKVGYFNNSKQLFEKMVRAGISPHTHLYNSLIDGYCKFGXXXXXXXX 891
P+ +TY TLI +L K G ++KQLFEKMV G +P+ +YNSLIDGYCKFG
Sbjct: 562 PSEITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNSLIDGYCKFGNMEEALNL 621
Query: 890 XXXXXXXXXKPDAFTVSAVINGFCRKGDMEGALTFYYESKRKDILPDFSGFVCIVKGLSI 711
KPD FTVSA+ING+C KGDMEGAL F++E K+KDILPDF GF+ +V+GL
Sbjct: 622 LIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFFFEFKKKDILPDFLGFMYLVRGLCA 681
Query: 710 KGRMEEARSILKEMLEISSNIDLINRAGDEKETESLASILISLCEQGNIEQATSIIGEVG 531
KGRMEEAR IL+EML+ S ++LINR E ETES+ S +ISLCEQG+I++A +++ EVG
Sbjct: 682 KGRMEEARGILREMLQTRSVLELINRVDTEIETESVESFIISLCEQGSIQEAVTVLNEVG 741
Query: 530 SVAFSSKKRYXXXXXXXXXXXXSMFTRNSLYAYMGSLGMRFPDLLKMRSSFEESDCFSIQ 351
S+ F +R +Y GS R P
Sbjct: 742 SIFFPIGRRCRPQNRAE--------KEEKIYEGKGS---RVP------------------ 772
Query: 350 PIPLDFSACYSLVSSLCSEGKLDKANEVVQEMLLNTTKG 234
DF + YSL++SLCS G+L +AN ++MLL+ G
Sbjct: 773 ----DFESYYSLIASLCSRGELLEANRKTRQMLLDMDTG 807
Score = 65.9 bits (159), Expect = 2e-08
Identities = 36/133 (27%), Positives = 60/133 (45%)
Frame = -2
Query: 1073 APTVMTYGTLISALSKVGYFNNSKQLFEKMVRAGISPHTHLYNSLIDGYCKFGXXXXXXX 894
AP ++Y LI S+ GY + EKM + G+ P+ Y +++ G+CK G
Sbjct: 190 APDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYT 249
Query: 893 XXXXXXXXXXKPDAFTVSAVINGFCRKGDMEGALTFYYESKRKDILPDFSGFVCIVKGLS 714
+ D F +I+GFC +GD++ + +++ I P + I+ GL
Sbjct: 250 LFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLC 309
Query: 713 IKGRMEEARSILK 675
GR EA + K
Sbjct: 310 KAGRTSEADEVSK 322
Score = 57.8 bits (138), Expect = 5e-06
Identities = 40/173 (23%), Positives = 75/173 (43%)
Frame = -2
Query: 1064 VMTYGTLISALSKVGYFNNSKQLFEKMVRAGISPHTHLYNSLIDGYCKFGXXXXXXXXXX 885
V+ Y + I + G + + ++M+ GI+P T Y LIDG+ + G
Sbjct: 158 VVFYSSWICGYFREGVLVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLE 217
Query: 884 XXXXXXXKPDAFTVSAVINGFCRKGDMEGALTFYYESKRKDILPDFSGFVCIVKGLSIKG 705
KP+ T +A++ GFC+KG ++ A T + + I D +V ++ G +G
Sbjct: 218 KMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTRG 277
Query: 704 RMEEARSILKEMLEISSNIDLINRAGDEKETESLASILISLCEQGNIEQATSI 546
++ +L++M + G + SI+ LC+ G +A +
Sbjct: 278 DIDCVFGLLEDM----------EKRGISPSIVTYNSIINGLCKAGRTSEADEV 320
Score = 57.0 bits (136), Expect = 8e-06
Identities = 39/170 (22%), Positives = 72/170 (42%)
Frame = -2
Query: 1070 PTVMTYGTLISALSKVGYFNNSKQLFEKMVRAGISPHTHLYNSLIDGYCKFGXXXXXXXX 891
P + T L+ AL ++G L M R Y+S I GY + G
Sbjct: 121 PNIATCTALLGALFQLGRVREVSDLVSWMEREEFVFDVVFYSSWICGYFREGVLVEAIRK 180
Query: 890 XXXXXXXXXKPDAFTVSAVINGFCRKGDMEGALTFYYESKRKDILPDFSGFVCIVKGLSI 711
PD + + +I+GF R+G +E A+ F + K+ + P+ + I+ G
Sbjct: 181 HKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCK 240
Query: 710 KGRMEEARSILKEMLEISSNIDLINRAGDEKETESLASILISLCEQGNIE 561
KG+++EA ++ K ++ G E + +++ C +G+I+
Sbjct: 241 KGKLDEAYTLFK----------MVENLGIEVDEFMYVTLIDGFCTRGDID 280
>ref|XP_004163031.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
mitochondrial-like [Cucumis sativus]
Length = 1061
Score = 199 bits (507), Expect = 7e-49
Identities = 112/295 (37%), Positives = 166/295 (56%), Gaps = 16/295 (5%)
Frame = -2
Query: 1070 PTVMTYGTLISALSKVGYFNNSKQLFEKMVRAGISPHTHLYNSLIDGYCKFGXXXXXXXX 891
PT +TYGTLI +L + GY +++QLFE+M+ G+ P+TH+YNSLIDGY + G
Sbjct: 779 PTEITYGTLIDSLCREGYLEDARQLFERMIPKGLKPNTHIYNSLIDGYIRIGQIEEAFKL 838
Query: 890 XXXXXXXXXKPDAFTVSAVINGFCRKGDMEGALTFYYESKRKDILPDFSGFVCIVKGLSI 711
PD F+VS+ I +C+KGDMEGAL+F++E K + I PDF GF+ +++GL
Sbjct: 839 LHELRTGAFNPDEFSVSSAIKAYCQKGDMEGALSFFFEFKNEGISPDFLGFLYLIRGLCA 898
Query: 710 KGRMEEARSILKEMLEISSNIDLINRAGDEKETESLASILISLCEQGNIEQATSIIGEVG 531
KGRMEEAR IL+E ++ S ++LIN+ E E ES+ S L LCE+G I +A +I+ EVG
Sbjct: 899 KGRMEEARDILRETIQSQSVMELINKVDTEIEAESIGSALTHLCEEGRILEAYTILNEVG 958
Query: 530 SVAFS--------SKKRYXXXXXXXXXXXXSMFTRNSLYAYMGSLGMRFPDL-------- 399
++ FS ++ R + YA + G +
Sbjct: 959 TIFFSAHQHSTIYNQPRKLHMNDERSVDIIHSGPKACSYASFPNFGSSDVNTTENMEHEN 1018
Query: 398 LKMRSSFEESDCFSIQPIPLDFSACYSLVSSLCSEGKLDKANEVVQEMLLNTTKG 234
L+ R+ FE DF+ Y+L+SS CSEG + KA ++V+E++ N +G
Sbjct: 1019 LEKRAHFE------------DFNFYYTLLSSFCSEGNVQKATQLVKEVISNLDRG 1061
>ref|XP_004148334.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
mitochondrial-like [Cucumis sativus]
Length = 1085
Score = 199 bits (507), Expect = 7e-49
Identities = 112/295 (37%), Positives = 166/295 (56%), Gaps = 16/295 (5%)
Frame = -2
Query: 1070 PTVMTYGTLISALSKVGYFNNSKQLFEKMVRAGISPHTHLYNSLIDGYCKFGXXXXXXXX 891
PT +TYGTLI +L + GY +++QLFE+M+ G+ P+TH+YNSLIDGY + G
Sbjct: 803 PTEITYGTLIDSLCREGYLEDARQLFERMIPKGLKPNTHIYNSLIDGYIRIGQIEEAFKL 862
Query: 890 XXXXXXXXXKPDAFTVSAVINGFCRKGDMEGALTFYYESKRKDILPDFSGFVCIVKGLSI 711
PD F+VS+ I +C+KGDMEGAL+F++E K + I PDF GF+ +++GL
Sbjct: 863 LHELRTGAFNPDEFSVSSAIKAYCQKGDMEGALSFFFEFKNEGISPDFLGFLYLIRGLCA 922
Query: 710 KGRMEEARSILKEMLEISSNIDLINRAGDEKETESLASILISLCEQGNIEQATSIIGEVG 531
KGRMEEAR IL+E ++ S ++LIN+ E E ES+ S L LCE+G I +A +I+ EVG
Sbjct: 923 KGRMEEARDILRETIQSQSVMELINKVDTEIEAESIGSALTHLCEEGRILEAYTILNEVG 982
Query: 530 SVAFS--------SKKRYXXXXXXXXXXXXSMFTRNSLYAYMGSLGMRFPDL-------- 399
++ FS ++ R + YA + G +
Sbjct: 983 TIFFSAHQHSTIYNQPRKLHMNDERSVDIIHSGPKACSYASFPNFGSSDVNTTENMEHEN 1042
Query: 398 LKMRSSFEESDCFSIQPIPLDFSACYSLVSSLCSEGKLDKANEVVQEMLLNTTKG 234
L+ R+ FE DF+ Y+L+SS CSEG + KA ++V+E++ N +G
Sbjct: 1043 LEKRAHFE------------DFNFYYTLLSSFCSEGNVQKATQLVKEVISNLDRG 1085