BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023883
         (311 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510888.1| pentatricopeptide repeat-containing protein,...   118   6e-25
ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago t...   107   1e-21
ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containi...   104   6e-21
ref|XP_004163116.1| PREDICTED: pentatricopeptide repeat-containi...   102   2e-20
ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containi...   102   2e-20

>ref|XP_002510888.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550003|gb|EEF51490.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 554

 Score =  118 bits (295), Expect = 6e-25
 Identities = 53/103 (51%), Positives = 77/103 (74%)
 Frame = +1

Query: 1   LLYKQMLREGIRPDHLTLPFLVKECSQRVDVGLGTSVHAHIVEIGLDKDLFVQNAVVNMY 180
           +LYKQML   I PD LT PFL+KEC++ V +  G  +H H +++GL  DLFVQN++++ Y
Sbjct: 94  ILYKQMLCNDISPDCLTFPFLLKECTRNVAIYGGRGIHGHAIKLGLYSDLFVQNSLISFY 153

Query: 181 AMCGDLESSRRVFDEMCVRDIVSWNSLLIGYLRLGALDAALDM 309
           + C  + +SR++FDEM  RD+VSWNS++IGYLR G LD +L++
Sbjct: 154 SACEFVSNSRKLFDEMSNRDVVSWNSMIIGYLRSGDLDQSLNL 196



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 28/93 (30%), Positives = 52/93 (55%)
 Frame = +1

Query: 31  IRPDHLTLPFLVKECSQRVDVGLGTSVHAHIVEIGLDKDLFVQNAVVNMYAMCGDLESSR 210
           +RPD +T+  ++  C+    +  G  VH+++   GL+ D+ +  A+V+MY  CG L+ + 
Sbjct: 245 VRPDKITIASVLSACAHLGAIDHGKWVHSYLRRSGLECDMVIGTALVDMYGKCGCLQRAY 304

Query: 211 RVFDEMCVRDIVSWNSLLIGYLRLGALDAALDM 309
            VF EM  +D ++W +++  +   G    A DM
Sbjct: 305 EVFREMSEKDTLAWTAMISVFALNGFGKEAFDM 337


>ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355497290|gb|AES78493.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 541

 Score =  107 bits (266), Expect = 1e-21
 Identities = 51/105 (48%), Positives = 80/105 (76%), Gaps = 2/105 (1%)
 Frame = +1

Query: 1   LLYKQMLREGIRPDHLTLPFLVKECSQRVDVG--LGTSVHAHIVEIGLDKDLFVQNAVVN 174
           +LYKQML +GI P++LT PFLVK CS R+  G  +G  +HAH+++ G   D+FV N++++
Sbjct: 114 MLYKQMLNKGIVPNNLTFPFLVKGCS-RLQYGGTVGEVIHAHVLKFGFLNDVFVGNSLIS 172

Query: 175 MYAMCGDLESSRRVFDEMCVRDIVSWNSLLIGYLRLGALDAALDM 309
           ++   G  +++R+VFDEM VRD+VSWNS+++GYLR G ++ AL++
Sbjct: 173 LFMNFGLSKNARKVFDEMFVRDVVSWNSMVVGYLRNGEVEMALNL 217



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 26/97 (26%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
 Frame = +1

Query: 31  IRPDHLTLPFLVKECSQRVDVGLGTSVHAHIVEIGLDKDLFVQNAVVNMYAMCGDLESSR 210
           ++PD +T+  ++  C+    +  G  VHA++ +  ++ D+ +  A+VNMY  CGD++ + 
Sbjct: 261 VKPDKITIASVLSACALLGSIDHGKWVHAYLRKNDIECDVVIGTALVNMYGKCGDVQQAI 320

Query: 211 RVFDEMCVRDIVSWNSLLIGYLRLG----ALDAALDM 309
            +F++M  +D  +W +++  +   G    A D  L+M
Sbjct: 321 EIFNDMPEKDASAWTAMISVFALHGFGKKAFDCFLEM 357


>ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 540

 Score =  104 bits (260), Expect = 6e-21
 Identities = 47/103 (45%), Positives = 74/103 (71%)
 Frame = +1

Query: 1   LLYKQMLREGIRPDHLTLPFLVKECSQRVDVGLGTSVHAHIVEIGLDKDLFVQNAVVNMY 180
           +LYKQM  + I P+ LT PFL+K C+Q +D   G ++H  +++ G  KD++V N+++++Y
Sbjct: 112 MLYKQMFCKDIVPNCLTFPFLLKGCTQWLDGATGQAIHTQVIKFGFLKDVYVANSLISLY 171

Query: 181 AMCGDLESSRRVFDEMCVRDIVSWNSLLIGYLRLGALDAALDM 309
              G L ++R+VFDEM V D+V+WNS++IG LR G LD A+D+
Sbjct: 172 MAGGLLSNARKVFDEMLVTDVVTWNSMVIGCLRNGGLDMAMDL 214



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 23/78 (29%), Positives = 47/78 (60%)
 Frame = +1

Query: 31  IRPDHLTLPFLVKECSQRVDVGLGTSVHAHIVEIGLDKDLFVQNAVVNMYAMCGDLESSR 210
           ++PD +T+  ++  C+Q   +  G  VH ++   G++ D+ +  A+VNMY  CGD++ + 
Sbjct: 257 VKPDKITIASVLSACAQLGAIDHGKWVHGYLRRNGIECDVVIGTALVNMYGKCGDVQKAF 316

Query: 211 RVFDEMCVRDIVSWNSLL 264
            +F+EM  +D  +W  ++
Sbjct: 317 EIFEEMPEKDASAWTVMI 334


>ref|XP_004163116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Cucumis sativus]
          Length = 442

 Score =  102 bits (255), Expect = 2e-20
 Identities = 46/102 (45%), Positives = 76/102 (74%)
 Frame = +1

Query: 4   LYKQMLREGIRPDHLTLPFLVKECSQRVDVGLGTSVHAHIVEIGLDKDLFVQNAVVNMYA 183
           ++ +ML+ G+ PD+LT PFLVK  S+ ++  LG +VH HIV+ G + D F+QN++++MYA
Sbjct: 100 VFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVHIVKSGHEIDKFIQNSLIHMYA 159

Query: 184 MCGDLESSRRVFDEMCVRDIVSWNSLLIGYLRLGALDAALDM 309
            C D+ S+R+VFDEM  +++V+WN++L GY + G L+ A ++
Sbjct: 160 SCRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMAREV 201


>ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Cucumis sativus]
          Length = 542

 Score =  102 bits (255), Expect = 2e-20
 Identities = 46/102 (45%), Positives = 76/102 (74%)
 Frame = +1

Query: 4   LYKQMLREGIRPDHLTLPFLVKECSQRVDVGLGTSVHAHIVEIGLDKDLFVQNAVVNMYA 183
           ++ +ML+ G+ PD+LT PFLVK  S+ ++  LG +VH HIV+ G + D F+QN++++MYA
Sbjct: 100 VFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVHIVKSGHEIDKFIQNSLIHMYA 159

Query: 184 MCGDLESSRRVFDEMCVRDIVSWNSLLIGYLRLGALDAALDM 309
            C D+ S+R+VFDEM  +++V+WN++L GY + G L+ A ++
Sbjct: 160 SCRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMAREV 201