BLASTX nr result
ID: Coptis24_contig00023877
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00023877
(682 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003631849.1| PREDICTED: uncharacterized protein LOC100259... 275 5e-74
gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis] 272 8e-74
emb|CAN65719.1| hypothetical protein VITISV_020846 [Vitis vinifera] 274 1e-73
emb|CAN68847.1| hypothetical protein VITISV_007652 [Vitis vinifera] 272 5e-73
gb|ABG37660.1| integrase [Populus trichocarpa] 267 2e-72
>ref|XP_003631849.1| PREDICTED: uncharacterized protein LOC100259900 [Vitis vinifera]
Length = 1409
Score = 275 bits (704), Expect(2) = 5e-74
Identities = 134/214 (62%), Positives = 163/214 (76%)
Frame = +1
Query: 1 VIIASNLDSEQEGKLIRVLKERKTALGWNIADINGISPTDCMHHIHLEKDAKPTREFHRR 180
V+I++ L EQE KL++VLKE K A+GW+I+D+ GI+P C HHI+LE++AKP R+ RR
Sbjct: 821 VVISATLTEEQEMKLLKVLKENKGAIGWSISDLKGINPLICTHHIYLEENAKPVRQPQRR 880
Query: 181 LNPNMKEVMRVEVLKLLDVGIIYPISNSKWVSPVQVVPKKYGLTVVENSKGELVPTHMTI 360
LNP M++V+R EVLKLLD GIIYPIS+S WVSP QVVPKK G+TV++N +GEL+PT +T
Sbjct: 881 LNPLMQDVVRNEVLKLLDAGIIYPISDSSWVSPTQVVPKKSGITVMKNDEGELIPTRLTT 940
Query: 361 GWRFCIDYRKLNLATMKDHFLLPFIDQILERLAGHKXXXXXXXXXXXXXQICITPEDQEK 540
GWR CID+RKLN T KDHF LPF+DQ+LER+AGH QI I EDQEK
Sbjct: 941 GWRVCIDFRKLNAVTKKDHFPLPFLDQVLERVAGH-DYYCFLDGYSGYFQIAIALEDQEK 999
Query: 541 TNFTCPFRTFAYCRMPFGLCNAPGTF*R*MFSIF 642
T FTCPF T+AY RMPFGLCNAP TF R M SIF
Sbjct: 1000 TTFTCPFGTYAYRRMPFGLCNAPATFQRCMLSIF 1033
Score = 28.9 bits (63), Expect(2) = 5e-74
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3
Query: 639 FSDMVERFLEVFMD 680
FSDMVER +EVFMD
Sbjct: 1033 FSDMVERIMEVFMD 1046
>gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis]
Length = 1788
Score = 272 bits (695), Expect(2) = 8e-74
Identities = 137/214 (64%), Positives = 158/214 (73%)
Frame = +1
Query: 1 VIIASNLDSEQEGKLIRVLKERKTALGWNIADINGISPTDCMHHIHLEKDAKPTREFHRR 180
VII+S L + Q+ L+ VL+E + A+GW +ADI GISPT H IHL DAKPTR+ RR
Sbjct: 781 VIISSELTTGQKEALLAVLRENREAIGWTMADIKGISPTIVQHRIHLIDDAKPTRDAQRR 840
Query: 181 LNPNMKEVMRVEVLKLLDVGIIYPISNSKWVSPVQVVPKKYGLTVVENSKGELVPTHMTI 360
LNP MKE +R ++LK LD GIIYPIS+S WVSPVQVVPKK G+TV++N EL+PT +
Sbjct: 841 LNPVMKEAVRKDILKCLDHGIIYPISDSSWVSPVQVVPKKSGITVIQNEANELIPTRIQT 900
Query: 361 GWRFCIDYRKLNLATMKDHFLLPFIDQILERLAGHKXXXXXXXXXXXXXQICITPEDQEK 540
GWR CIDYRKLNLAT KDHF LPFIDQ+LERLAGH+ QI I PEDQEK
Sbjct: 901 GWRVCIDYRKLNLATRKDHFPLPFIDQMLERLAGHE-FYCFLDGYSGYNQIPIAPEDQEK 959
Query: 541 TNFTCPFRTFAYCRMPFGLCNAPGTF*R*MFSIF 642
T FTCP+ TFAY RMPFGLCNAP TF R M SIF
Sbjct: 960 TTFTCPYGTFAYRRMPFGLCNAPATFQRCMISIF 993
Score = 31.6 bits (70), Expect(2) = 8e-74
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 639 FSDMVERFLEVFMD 680
FSDMVERFLE+FMD
Sbjct: 993 FSDMVERFLEIFMD 1006
>emb|CAN65719.1| hypothetical protein VITISV_020846 [Vitis vinifera]
Length = 1791
Score = 274 bits (700), Expect(2) = 1e-73
Identities = 133/214 (62%), Positives = 162/214 (75%)
Frame = +1
Query: 1 VIIASNLDSEQEGKLIRVLKERKTALGWNIADINGISPTDCMHHIHLEKDAKPTREFHRR 180
V+I++ L EQE K ++VLKE K A+GW+I+D+ GI+P C HHI+LE++AKP R+ RR
Sbjct: 847 VVISATLTEEQEMKXLKVLKENKRAIGWSISDLKGINPLICTHHIYLEENAKPVRQPQRR 906
Query: 181 LNPNMKEVMRVEVLKLLDVGIIYPISNSKWVSPVQVVPKKYGLTVVENSKGELVPTHMTI 360
LNP M++V+R EVLKLLD GIIYPIS+S WVSP QVVPKK G+TV++N +GEL+PT +T
Sbjct: 907 LNPLMQDVVRNEVLKLLDAGIIYPISDSSWVSPTQVVPKKSGITVMKNDEGELIPTRLTT 966
Query: 361 GWRFCIDYRKLNLATMKDHFLLPFIDQILERLAGHKXXXXXXXXXXXXXQICITPEDQEK 540
GWR CID+RKLN T KDHF LPF+DQ+LER+AGH QI I EDQEK
Sbjct: 967 GWRVCIDFRKLNAVTKKDHFPLPFLDQVLERVAGH-DYYCFLDGYSGYFQIAIALEDQEK 1025
Query: 541 TNFTCPFRTFAYCRMPFGLCNAPGTF*R*MFSIF 642
T FTCPF T+AY RMPFGLCNAP TF R M SIF
Sbjct: 1026 TTFTCPFGTYAYRRMPFGLCNAPATFQRCMLSIF 1059
Score = 28.9 bits (63), Expect(2) = 1e-73
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3
Query: 639 FSDMVERFLEVFMD 680
FSDMVER +EVFMD
Sbjct: 1059 FSDMVERIMEVFMD 1072
>emb|CAN68847.1| hypothetical protein VITISV_007652 [Vitis vinifera]
Length = 1551
Score = 272 bits (695), Expect(2) = 5e-73
Identities = 132/214 (61%), Positives = 161/214 (75%)
Frame = +1
Query: 1 VIIASNLDSEQEGKLIRVLKERKTALGWNIADINGISPTDCMHHIHLEKDAKPTREFHRR 180
V+I++ L EQE KL++VLKE K A+GW+I+D+ GI+P C HHI+LE++AKP R+ RR
Sbjct: 657 VVISATLTEEQEMKLLKVLKENKRAIGWSISDLKGINPLICTHHIYLEENAKPVRQPQRR 716
Query: 181 LNPNMKEVMRVEVLKLLDVGIIYPISNSKWVSPVQVVPKKYGLTVVENSKGELVPTHMTI 360
LNP M++V+R EVLKLLD GIIYPIS+S WVSP QVVPKK G+TV++N +GE + T +T
Sbjct: 717 LNPLMQDVVRNEVLKLLDAGIIYPISDSSWVSPTQVVPKKSGITVMKNDEGEFISTRLTT 776
Query: 361 GWRFCIDYRKLNLATMKDHFLLPFIDQILERLAGHKXXXXXXXXXXXXXQICITPEDQEK 540
GWR CID+RKLN T KDHF LPF+DQ+LER+AGH QI I EDQEK
Sbjct: 777 GWRVCIDFRKLNAVTKKDHFPLPFLDQVLERVAGH-DYYCFLDGYSGYFQIAIALEDQEK 835
Query: 541 TNFTCPFRTFAYCRMPFGLCNAPGTF*R*MFSIF 642
T FTCPF T+AY RMPFGLCNAP TF R M SIF
Sbjct: 836 TTFTCPFGTYAYXRMPFGLCNAPATFQRCMLSIF 869
Score = 28.9 bits (63), Expect(2) = 5e-73
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3
Query: 639 FSDMVERFLEVFMD 680
FSDMVER +EVFMD
Sbjct: 869 FSDMVERIMEVFMD 882
>gb|ABG37660.1| integrase [Populus trichocarpa]
Length = 879
Score = 267 bits (683), Expect(2) = 2e-72
Identities = 139/214 (64%), Positives = 157/214 (73%)
Frame = +1
Query: 1 VIIASNLDSEQEGKLIRVLKERKTALGWNIADINGISPTDCMHHIHLEKDAKPTREFHRR 180
VII+S L++ QEGKL++ LK K ALGW IADI GISP C H I+LE++AKP RE RR
Sbjct: 206 VIISSKLNAHQEGKLLQTLKMHKNALGWTIADIKGISPLICTHRIYLEENAKPFREMQRR 265
Query: 181 LNPNMKEVMRVEVLKLLDVGIIYPISNSKWVSPVQVVPKKYGLTVVENSKGELVPTHMTI 360
LNPNMKEV+R EV+KLLD IIYPIS+SKWVSP QVV KK G+TV+ N K EL+PT
Sbjct: 266 LNPNMKEVVRNEVIKLLDNRIIYPISDSKWVSPTQVVSKKSGVTVITNEKIELIPTRTIT 325
Query: 361 GWRFCIDYRKLNLATMKDHFLLPFIDQILERLAGHKXXXXXXXXXXXXXQICITPEDQEK 540
GWR CIDYRKLN T KD+F LPF+DQILER+AGH+ QI I EDQEK
Sbjct: 326 GWRMCIDYRKLNSMTRKDNFHLPFMDQILERVAGHE-FYCFLDGYSGYNQIEIALEDQEK 384
Query: 541 TNFTCPFRTFAYCRMPFGLCNAPGTF*R*MFSIF 642
T FT PF TFAY RMPFGLCNAP TF R M SIF
Sbjct: 385 TTFTYPFETFAYRRMPFGLCNAPATFQRCMLSIF 418
Score = 31.6 bits (70), Expect(2) = 2e-72
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 639 FSDMVERFLEVFMD 680
FSDMVERFLE+FMD
Sbjct: 418 FSDMVERFLEIFMD 431