BLASTX nr result
ID: Coptis24_contig00023857
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00023857
(515 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containi... 140 1e-48
ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containi... 140 9e-48
ref|XP_002324074.1| predicted protein [Populus trichocarpa] gi|2... 146 4e-47
ref|XP_003618546.1| Pentatricopeptide repeat-containing protein ... 138 6e-46
ref|NP_197038.1| pentatricopeptide repeat-containing protein [Ar... 134 1e-43
>ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Glycine max]
Length = 629
Score = 140 bits (353), Expect(2) = 1e-48
Identities = 65/100 (65%), Positives = 80/100 (80%)
Frame = +1
Query: 1 MYSKCGQIDIACKVFETMAYRNVVAWNALLIGLAMHGRGTSALELFSRMVREVKPDDVTF 180
MY+KCG+I A VF M RNVVAWNA+L GLAMHG G +E+F+ MV EVKPD VTF
Sbjct: 293 MYAKCGRISAALMVFRHMPRRNVVAWNAMLCGLAMHGMGKVVVEMFACMVEEVKPDAVTF 352
Query: 181 VAVLSACNHSGLVDQGFQYFYDLGTRYGLMPKIEHYACMV 300
+A+LS+C+HSGLV+QG+QYF+DL YG+ P+IEHYACMV
Sbjct: 353 MALLSSCSHSGLVEQGWQYFHDLERAYGIRPEIEHYACMV 392
Score = 77.8 bits (190), Expect(2) = 1e-48
Identities = 38/72 (52%), Positives = 48/72 (66%)
Frame = +3
Query: 297 GRIEEAEFLVKGMPIPPNEVILGSXXXXXXXXXXXXXXXXXXQELIQIAPLNTEYHVLLS 476
GR+EEAE LVK +PIPPNEV+LGS +EL+Q+ PLNTEYH+LLS
Sbjct: 399 GRLEEAEDLVKKLPIPPNEVVLGSLLGACYAHGKLRLGEKIMRELVQMDPLNTEYHILLS 458
Query: 477 NMHTLAGRKDEA 512
NM+ L G+ D+A
Sbjct: 459 NMYALCGKADKA 470
>ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Vitis vinifera]
Length = 632
Score = 140 bits (353), Expect(2) = 9e-48
Identities = 65/100 (65%), Positives = 81/100 (81%)
Frame = +1
Query: 1 MYSKCGQIDIACKVFETMAYRNVVAWNALLIGLAMHGRGTSALELFSRMVREVKPDDVTF 180
MY+KCG+I IA K F+ M RNVV+WNA+L GLAMHG G +AL++F +M +E KPDDVTF
Sbjct: 296 MYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEAKPDDVTF 355
Query: 181 VAVLSACNHSGLVDQGFQYFYDLGTRYGLMPKIEHYACMV 300
+VLSAC+HSGLVDQG YF +L + YG+ PK+EHYACMV
Sbjct: 356 TSVLSACSHSGLVDQGCFYFGNLESVYGITPKVEHYACMV 395
Score = 75.1 bits (183), Expect(2) = 9e-48
Identities = 37/72 (51%), Positives = 47/72 (65%)
Frame = +3
Query: 297 GRIEEAEFLVKGMPIPPNEVILGSXXXXXXXXXXXXXXXXXXQELIQIAPLNTEYHVLLS 476
GR+EEAE LV+ MPI PNEV+LGS QEL+Q+ P NTEYH+LLS
Sbjct: 402 GRLEEAEILVREMPIRPNEVVLGSLLGSCSIHGKLQLGEHLLQELVQLDPQNTEYHILLS 461
Query: 477 NMHTLAGRKDEA 512
NM+ LAG+++ A
Sbjct: 462 NMYALAGKQNRA 473
>ref|XP_002324074.1| predicted protein [Populus trichocarpa] gi|222867076|gb|EEF04207.1|
predicted protein [Populus trichocarpa]
Length = 636
Score = 146 bits (369), Expect(2) = 4e-47
Identities = 67/100 (67%), Positives = 81/100 (81%)
Frame = +1
Query: 1 MYSKCGQIDIACKVFETMAYRNVVAWNALLIGLAMHGRGTSALELFSRMVREVKPDDVTF 180
MY+KCG ID+A KVF+ + RNVVAWNA+L GLAMHGRG L++F +M+ E KPDD+TF
Sbjct: 300 MYAKCGPIDMAFKVFKYLPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIEEAKPDDLTF 359
Query: 181 VAVLSACNHSGLVDQGFQYFYDLGTRYGLMPKIEHYACMV 300
+AVLSAC+HSGLVDQG+ YF L + YG PKIEHYACMV
Sbjct: 360 MAVLSACSHSGLVDQGYHYFRSLESEYGTTPKIEHYACMV 399
Score = 66.6 bits (161), Expect(2) = 4e-47
Identities = 35/72 (48%), Positives = 44/72 (61%)
Frame = +3
Query: 297 GRIEEAEFLVKGMPIPPNEVILGSXXXXXXXXXXXXXXXXXXQELIQIAPLNTEYHVLLS 476
G +EEA L+K MP+ PNEV+LGS QELIQ+ NTEYHVLLS
Sbjct: 406 GHLEEAVMLIKKMPMCPNEVVLGSLLGSCNAHGKLQLGERILQELIQMDGHNTEYHVLLS 465
Query: 477 NMHTLAGRKDEA 512
NM+ L G++D+A
Sbjct: 466 NMYVLEGKQDKA 477
>ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493561|gb|AES74764.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 637
Score = 138 bits (347), Expect(2) = 6e-46
Identities = 64/101 (63%), Positives = 81/101 (80%)
Frame = +1
Query: 1 MYSKCGQIDIACKVFETMAYRNVVAWNALLIGLAMHGRGTSALELFSRMVREVKPDDVTF 180
MY+KCG+I+ A VF +M RNVVAWNA+L GLAMHG G A+++F MV EVKPD VTF
Sbjct: 301 MYAKCGRINAALSVFRSMLKRNVVAWNAMLGGLAMHGMGKIAVDMFPSMVEEVKPDGVTF 360
Query: 181 VAVLSACNHSGLVDQGFQYFYDLGTRYGLMPKIEHYACMVG 303
+A+LSAC+HSGLV++G+ YF+DL Y + P+IEHYACMVG
Sbjct: 361 MALLSACSHSGLVEKGWDYFHDLEPVYRIKPEIEHYACMVG 401
Score = 71.2 bits (173), Expect(2) = 6e-46
Identities = 33/72 (45%), Positives = 48/72 (66%)
Frame = +3
Query: 297 GRIEEAEFLVKGMPIPPNEVILGSXXXXXXXXXXXXXXXXXXQELIQIAPLNTEYHVLLS 476
GR+EEAE +VK M IPPNEV+LGS ++L+++ PLNTEYH++LS
Sbjct: 407 GRLEEAEIMVKNMRIPPNEVVLGSLIGSCYAHGRLQLGEKIMRDLLEMDPLNTEYHIVLS 466
Query: 477 NMHTLAGRKDEA 512
NM+ L+G+ ++A
Sbjct: 467 NMYALSGKVEKA 478
>ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At5g15340, mitochondrial; Flags: Precursor
gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis
thaliana] gi|332004768|gb|AED92151.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 623
Score = 134 bits (336), Expect(2) = 1e-43
Identities = 61/100 (61%), Positives = 78/100 (78%)
Frame = +1
Query: 1 MYSKCGQIDIACKVFETMAYRNVVAWNALLIGLAMHGRGTSALELFSRMVREVKPDDVTF 180
MY+KCG ID + VF M RNVV WNAL GLAMHG+G +++F +M+REVKPDD+TF
Sbjct: 295 MYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIREVKPDDLTF 354
Query: 181 VAVLSACNHSGLVDQGFQYFYDLGTRYGLMPKIEHYACMV 300
AVLSAC+HSG+VD+G++ F+ L YGL PK++HYACMV
Sbjct: 355 TAVLSACSHSGIVDEGWRCFHSL-RFYGLEPKVDHYACMV 393
Score = 67.8 bits (164), Expect(2) = 1e-43
Identities = 34/72 (47%), Positives = 44/72 (61%)
Frame = +3
Query: 297 GRIEEAEFLVKGMPIPPNEVILGSXXXXXXXXXXXXXXXXXXQELIQIAPLNTEYHVLLS 476
G IEEAE L++ MP+PPNEV+LGS +ELIQ++P NTEY +L+S
Sbjct: 400 GLIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKVEIAERIKRELIQMSPGNTEYQILMS 459
Query: 477 NMHTLAGRKDEA 512
NM+ GR D A
Sbjct: 460 NMYVAEGRSDIA 471