BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023778
         (487 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAL25185.1|AC079852_18 Putative polyprotein [Oryza sativa] gi...    72   6e-11
gb|AAO66559.1| putative copia-type pol polyprotein [Oryza sativa...    70   1e-10
emb|CAN62791.1| hypothetical protein VITISV_024905 [Vitis vinifera]    70   1e-10
gb|ABB46561.1| retrotransposon protein, putative, Ty1-copia subc...    70   2e-10
emb|CAE04887.3| OSJNBa0042I15.9 [Oryza sativa Japonica Group]          70   2e-10

>gb|AAL25185.1|AC079852_18 Putative polyprotein [Oryza sativa] gi|31430131|gb|AAP52089.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1407

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 34/82 (41%), Positives = 50/82 (60%)
 Frame = +3

Query: 240  TPVGVAAPLVYFDHASTRVQQHHSVGDVLGDLKADLQTRSKIKNTVHYVCYVSLIEPKNV 419
            +P+ +A P ++       +Q+ H   ++LGD+   + TRS+I N   +  +VS IEP  V
Sbjct: 1193 SPINLAHPRIH-----QSIQRDHPTDNILGDINKGVSTRSRITNFCEHYSFVSSIEPLKV 1247

Query: 420  TEALNDEDWILAMQEELGQFVR 485
             EALND DW++AMQEEL  F R
Sbjct: 1248 EEALNDPDWVMAMQEELNNFTR 1269


>gb|AAO66559.1| putative copia-type pol polyprotein [Oryza sativa Japonica Group]
            gi|108709148|gb|ABF96943.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 2027

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 32/82 (39%), Positives = 50/82 (60%)
 Frame = +3

Query: 240  TPVGVAAPLVYFDHASTRVQQHHSVGDVLGDLKADLQTRSKIKNTVHYVCYVSLIEPKNV 419
            +P+ +A P ++       +Q+ H   ++LGD+   + TRS+I N   +  +VS +EP  V
Sbjct: 1180 SPINLARPRIH-----QSIQRDHPTDNILGDINKGVSTRSRIANFCEHYSFVSSLEPLRV 1234

Query: 420  TEALNDEDWILAMQEELGQFVR 485
             EA+ND DW++AMQEEL  F R
Sbjct: 1235 EEAINDPDWVMAMQEELNNFTR 1256


>emb|CAN62791.1| hypothetical protein VITISV_024905 [Vitis vinifera]
          Length = 956

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 35/67 (52%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
 Frame = +3

Query: 288 TRVQQHHSVGDVLGDLKADLQTRSKIK-NTVHYVCYVSLIEPKNVTEALNDEDWILAMQE 464
           +RV ++H + +V+G+ +  + TR + K N V YVCY S IEPKNV EALNDE W+ A+ E
Sbjct: 453 SRVPKNHPLSNVIGNYEDSMVTRRQSKLNEVSYVCYTSQIEPKNVEEALNDEAWVDALHE 512

Query: 465 ELGQFVR 485
           EL QF R
Sbjct: 513 ELNQFSR 519


>gb|ABB46561.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1991

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 32/82 (39%), Positives = 50/82 (60%)
 Frame = +3

Query: 240  TPVGVAAPLVYFDHASTRVQQHHSVGDVLGDLKADLQTRSKIKNTVHYVCYVSLIEPKNV 419
            +P+ +A P ++       +Q+ H   ++LGD+   + TRS+I N   +  +VS +EP  V
Sbjct: 993  SPINLARPRIH-----QSIQRDHPTDNILGDINKGVSTRSRIANFCEHYSFVSSLEPLRV 1047

Query: 420  TEALNDEDWILAMQEELGQFVR 485
             EALND DW++AMQEEL  F +
Sbjct: 1048 EEALNDPDWVMAMQEELNNFTQ 1069


>emb|CAE04887.3| OSJNBa0042I15.9 [Oryza sativa Japonica Group]
          Length = 1510

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 31/75 (41%), Positives = 47/75 (62%)
 Frame = +3

Query: 261  PLVYFDHASTRVQQHHSVGDVLGDLKADLQTRSKIKNTVHYVCYVSLIEPKNVTEALNDE 440
            PLV+       VQ+ H V ++LGD++  + TRS++ +   +  +VS +EP  V +AL D 
Sbjct: 948  PLVHHPRIHHTVQRDHPVDNILGDIRKGVTTRSRVASFCQHYSFVSSLEPTRVEDALGDS 1007

Query: 441  DWILAMQEELGQFVR 485
            DW++AMQEEL  F R
Sbjct: 1008 DWVMAMQEELNNFAR 1022