BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023755
         (381 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containi...   115   3e-24
emb|CAN74807.1| hypothetical protein VITISV_022137 [Vitis vinifera]   115   3e-24
ref|NP_188527.2| mitochondrial editing factor 20 [Arabidopsis th...   112   2e-23
ref|XP_003541958.1| PREDICTED: pentatricopeptide repeat-containi...   112   3e-23
ref|XP_003539487.1| PREDICTED: pentatricopeptide repeat-containi...   110   1e-22

>ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970
           [Vitis vinifera] gi|298204853|emb|CBI34160.3| unnamed
           protein product [Vitis vinifera]
          Length = 471

 Score =  115 bits (289), Expect = 3e-24
 Identities = 66/127 (51%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
 Frame = -2

Query: 380 HCRVLKIGLGYDVVVGTTCIHFYGSHGDCGSARKMFDEMGDRRTSATWNAMISGYCSQKK 201
           H R+LK G+  +V+V TT IHFY ++ D   AR +FDEM  +R+S TWNAMI+GYCSQ+ 
Sbjct: 129 HARILKQGVWSNVLVQTTAIHFYANNNDVALARLVFDEMR-KRSSVTWNAMITGYCSQRG 187

Query: 200 GIEYFAHAALKLFCGMLRCGNNGVNPNDTTMVSVLSACARIGDLVTGSCVHGRIEKIVYV 21
            +  +A  AL LF  ML     GV P DTTMV VLSA +++G L TG  VHG IEK V  
Sbjct: 188 KVVCYARDALVLFRAML-VDACGVKPTDTTMVCVLSAASQLGVLETGVGVHGYIEKTVLA 246

Query: 20  P-HDVYI 3
           P +DV++
Sbjct: 247 PANDVFV 253


>emb|CAN74807.1| hypothetical protein VITISV_022137 [Vitis vinifera]
          Length = 437

 Score =  115 bits (289), Expect = 3e-24
 Identities = 66/127 (51%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
 Frame = -2

Query: 380 HCRVLKIGLGYDVVVGTTCIHFYGSHGDCGSARKMFDEMGDRRTSATWNAMISGYCSQKK 201
           H R+LK G+  +V+V TT IHFY ++ D   AR +FDEM  +R+S TWNAMI+GYCSQ+ 
Sbjct: 129 HARILKQGVWSNVLVQTTAIHFYANNNDVALARLVFDEMR-KRSSVTWNAMITGYCSQRG 187

Query: 200 GIEYFAHAALKLFCGMLRCGNNGVNPNDTTMVSVLSACARIGDLVTGSCVHGRIEKIVYV 21
            +  +A  AL LF  ML     GV P DTTMV VLSA +++G L TG  VHG IEK V  
Sbjct: 188 KVVCYARDALVLFRAML-VDACGVKPTDTTMVCVLSAASQLGVLETGVGVHGYIEKTVLA 246

Query: 20  P-HDVYI 3
           P +DV++
Sbjct: 247 PANDVFV 253


>ref|NP_188527.2| mitochondrial editing factor 20 [Arabidopsis thaliana]
           gi|75273478|sp|Q9LJ69.1|PP243_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g18970 gi|9280314|dbj|BAB01693.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|134031924|gb|ABO45699.1| At3g18970 [Arabidopsis
           thaliana] gi|332642654|gb|AEE76175.1| mitochondrial
           editing factor 20 [Arabidopsis thaliana]
          Length = 472

 Score =  112 bits (281), Expect = 2e-23
 Identities = 66/128 (51%), Positives = 82/128 (64%), Gaps = 2/128 (1%)
 Frame = -2

Query: 380 HCRVLKIGLGYDV-VVGTTCIHFYGSHGDCGSARKMFDEMGDRRTSATWNAMISGYCSQK 204
           H  V K+G  Y+  ++GTT +HFY  +GD   ARK+FDEM +R TS TWNAMI GYCS K
Sbjct: 134 HGMVKKLGFLYESELIGTTLLHFYAKNGDLRYARKVFDEMPER-TSVTWNAMIGGYCSHK 192

Query: 203 KGIEYFAHAALKLFCGMLRCGNNGVNPNDTTMVSVLSACARIGDLVTGSCVHGRIEKIVY 24
               + A  A+ LF     CG+ GV P DTTMV VLSA ++ G L  GS VHG IEK+ +
Sbjct: 193 DKGNHNARKAMVLFRRFSCCGS-GVRPTDTTMVCVLSAISQTGLLEIGSLVHGYIEKLGF 251

Query: 23  VPH-DVYI 3
            P  DV+I
Sbjct: 252 TPEVDVFI 259


>ref|XP_003541958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18970-like [Glycine max]
          Length = 477

 Score =  112 bits (280), Expect = 3e-23
 Identities = 62/123 (50%), Positives = 84/123 (68%)
 Frame = -2

Query: 380 HCRVLKIGLGYDVVVGTTCIHFYGSHGDCGSARKMFDEMGDRRTSATWNAMISGYCSQKK 201
           H R++K G   +++V TT I+FY S+ D  SAR++FDEM  RR++ TWNAMI+GY SQK+
Sbjct: 131 HARIVKHGFESNILVPTTKIYFYASNKDIISARRVFDEM-PRRSTVTWNAMITGYSSQKE 189

Query: 200 GIEYFAHAALKLFCGMLRCGNNGVNPNDTTMVSVLSACARIGDLVTGSCVHGRIEKIVYV 21
           G + +A  AL LF  ML    + + P  TT+VSVLSA ++IG L TG+C+HG  EK V  
Sbjct: 190 GNKKYALNALSLFIDML-VDVSVIKPTGTTIVSVLSAVSQIGMLETGACIHGFAEKTVCT 248

Query: 20  PHD 12
           P D
Sbjct: 249 PED 251


>ref|XP_003539487.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18970-like [Glycine max]
          Length = 595

 Score =  110 bits (275), Expect = 1e-22
 Identities = 61/123 (49%), Positives = 84/123 (68%)
 Frame = -2

Query: 380 HCRVLKIGLGYDVVVGTTCIHFYGSHGDCGSARKMFDEMGDRRTSATWNAMISGYCSQKK 201
           H  ++K G+  ++VV TT ++FY S+ D  S+RK+FDEM  RR++ TWNAMI+GY S K+
Sbjct: 251 HALIVKHGVESNIVVPTTKVYFYASNKDIISSRKVFDEM-PRRSTVTWNAMITGYSSLKE 309

Query: 200 GIEYFAHAALKLFCGMLRCGNNGVNPNDTTMVSVLSACARIGDLVTGSCVHGRIEKIVYV 21
           G + +A  AL LF  ML    +G+ P  TT+VSVLSA ++IG L TG+C+HG  EK V  
Sbjct: 310 GNKKYALNALYLFIDML-IDVSGIKPTATTIVSVLSAVSQIGMLETGACIHGFAEKTVCT 368

Query: 20  PHD 12
           P D
Sbjct: 369 PED 371