BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023684
         (265 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    97   2e-18
ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containi...    97   2e-18
ref|XP_002516159.1| pentatricopeptide repeat-containing protein,...    96   3e-18
ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containi...    93   3e-17
ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containi...    93   3e-17

>ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 49/88 (55%), Positives = 63/88 (71%)
 Frame = +1

Query: 1   IFDGFCLFRGLRRCEELSPTRLTLAPVLKMALFSGCISISEAIHCYAAKVGLDFDVFISG 180
           + +GF LF GL R    S TRLTLAP+LK+ L SG + +SE +H YA K+G + D+F+SG
Sbjct: 698 VLEGFRLF-GLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSG 756

Query: 181 ILVNIYTKVGWVEEARRLFDEMPEKDVV 264
            LVNIY K G V +AR LFD+MPE+D V
Sbjct: 757 ALVNIYCKYGLVGQARLLFDKMPERDAV 784


>ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 1573

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 49/88 (55%), Positives = 63/88 (71%)
 Frame = +1

Query: 1   IFDGFCLFRGLRRCEELSPTRLTLAPVLKMALFSGCISISEAIHCYAAKVGLDFDVFISG 180
           + +GF LF GL R    S TRLTLAP+LK+ L SG + +SE +H YA K+G + D+F+SG
Sbjct: 698 VLEGFRLF-GLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSG 756

Query: 181 ILVNIYTKVGWVEEARRLFDEMPEKDVV 264
            LVNIY K G V +AR LFD+MPE+D V
Sbjct: 757 ALVNIYCKYGLVGQARLLFDKMPERDAV 784


>ref|XP_002516159.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223544645|gb|EEF46161.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 1439

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 49/88 (55%), Positives = 65/88 (73%)
 Frame = +1

Query: 1    IFDGFCLFRGLRRCEELSPTRLTLAPVLKMALFSGCISISEAIHCYAAKVGLDFDVFISG 180
            + +GF +FR LR    +S ++LTLAP+LK+ L SG +  S+A+H YA K+GL+ DVF+SG
Sbjct: 791  VVEGFHIFRLLRE-RFVSTSKLTLAPMLKLCLLSGYVCASQAVHGYAVKIGLELDVFVSG 849

Query: 181  ILVNIYTKVGWVEEARRLFDEMPEKDVV 264
             LVNIY+K G V EAR LFD M E+DVV
Sbjct: 850  ALVNIYSKFGLVREARGLFDIMQERDVV 877


>ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
           [Vitis vinifera]
          Length = 1580

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 49/86 (56%), Positives = 63/86 (73%)
 Frame = +1

Query: 7   DGFCLFRGLRRCEELSPTRLTLAPVLKMALFSGCISISEAIHCYAAKVGLDFDVFISGIL 186
           +G  LFR L R    S TR+TLAPVLK+ L SGC+  +E +H YA K+GL++DVF+SG L
Sbjct: 710 EGLHLFR-LLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGAL 768

Query: 187 VNIYTKVGWVEEARRLFDEMPEKDVV 264
           VNIY+K G + +AR LFD M E+DVV
Sbjct: 769 VNIYSKCGRMRDARLLFDWMRERDVV 794


>ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 1611

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 51/86 (59%), Positives = 60/86 (69%)
 Frame = +1

Query: 7   DGFCLFRGLRRCEELSPTRLTLAPVLKMALFSGCISISEAIHCYAAKVGLDFDVFISGIL 186
           DGF LFR LRR   +S TR TLAPV KM L S   S SE++H YA K+GL +DVF++G L
Sbjct: 743 DGFHLFRLLRR-SVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGAL 801

Query: 187 VNIYTKVGWVEEARRLFDEMPEKDVV 264
           VNIY K G + EAR LFD M  +DVV
Sbjct: 802 VNIYAKFGLIREARVLFDGMAVRDVV 827