BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023604
         (410 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002334407.1| predicted protein [Populus trichocarpa] gi|2...   102   4e-20
ref|XP_002515124.1| pentatricopeptide repeat-containing protein,...    99   5e-19
ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containi...    95   7e-18
ref|XP_002874971.1| pentatricopeptide repeat-containing protein ...    94   1e-17
gb|AAC62783.1| F11O4.7 [Arabidopsis thaliana]                          93   3e-17

>ref|XP_002334407.1| predicted protein [Populus trichocarpa] gi|222872045|gb|EEF09176.1|
           predicted protein [Populus trichocarpa]
          Length = 513

 Score =  102 bits (253), Expect = 4e-20
 Identities = 45/86 (52%), Positives = 68/86 (79%)
 Frame = +2

Query: 152 IASVSKSLIETGTRNLNADTVPLSQSLVLDILRRNSIPTLRKIDFFKWASLRHNYKHSVD 331
           +A ++K+L E+GTR+L+ D++PLS+SLVL ILRRNS+ + +K++FFKW S+RH YKHSV 
Sbjct: 7   VAYLTKTLSESGTRSLDPDSIPLSESLVLQILRRNSLDSSKKMEFFKWCSVRHIYKHSVS 66

Query: 332 TYGEIFLSVCRAGCFNEIRPLIELMK 409
           TY ++F ++CR+G   E+  L+  MK
Sbjct: 67  TYSQMFSTLCRSGYLEEVPDLLNSMK 92


>ref|XP_002515124.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545604|gb|EEF47108.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 898

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 44/86 (51%), Positives = 61/86 (70%)
 Frame = +2

Query: 152 IASVSKSLIETGTRNLNADTVPLSQSLVLDILRRNSIPTLRKIDFFKWASLRHNYKHSVD 331
           +A ++K+L E+G RNL+ D +PLS+ L+L ILR+NS+   +KI+FFKW S  HNYKHS  
Sbjct: 55  VAFLNKALSESGVRNLDPDFIPLSEPLILQILRQNSLDASKKIEFFKWCSFSHNYKHSAC 114

Query: 332 TYGEIFLSVCRAGCFNEIRPLIELMK 409
            Y  +F +VC AG F E+R L+  MK
Sbjct: 115 VYSHMFRTVCNAGYFEEVRSLLNSMK 140


>ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570
           [Vitis vinifera]
          Length = 792

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 45/88 (51%), Positives = 63/88 (71%), Gaps = 2/88 (2%)
 Frame = +2

Query: 152 IASVSKSLIETGTRNLNADTVPLSQSLVLDILRRNSIPTLRKIDFFKWASLRHNYKHSVD 331
           +AS+SK+L E GTR+ + +++P+S+SLV+ IL RNSI   RK++FF+W S RHNYKHSV 
Sbjct: 25  VASISKTLSERGTRSPDLESIPISESLVVQILGRNSIDVFRKVEFFRWCSFRHNYKHSVG 84

Query: 332 TYGEIFLSVCRAGC--FNEIRPLIELMK 409
            Y  IF  VCRAG    +++  L+  MK
Sbjct: 85  AYSHIFRIVCRAGAEFLDQVPLLMSSMK 112


>ref|XP_002874971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297320808|gb|EFH51230.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 802

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 45/87 (51%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
 Frame = +2

Query: 152 IASVSKSLIETGTRNLNADTVPLSQSLVLDILRRNSIPTLRKIDFFKWA-SLRHNYKHSV 328
           +AS+SK+L ++GTR L+A+++P+S+ +VL ILRRNSI   +K+DFF+W  SLR  YKHSV
Sbjct: 33  VASLSKTLSQSGTRGLDANSIPISEPVVLQILRRNSIDPSKKLDFFRWCYSLRTGYKHSV 92

Query: 329 DTYGEIFLSVCRAGCFNEIRPLIELMK 409
             Y +IF +VCR G   E+  L+  MK
Sbjct: 93  SAYSQIFRTVCRTGLLGEVPDLLCSMK 119


>gb|AAC62783.1| F11O4.7 [Arabidopsis thaliana]
          Length = 508

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 44/87 (50%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
 Frame = +2

Query: 152 IASVSKSLIETGTRNLNADTVPLSQSLVLDILRRNSIPTLRKIDFFKWA-SLRHNYKHSV 328
           +AS+SK+L ++GTR+L+A+++P+S+ +VL ILRRNSI   +K+DFF+W  SLR  YKHS 
Sbjct: 33  VASLSKTLSQSGTRSLDANSIPISEPVVLQILRRNSIDPSKKLDFFRWCYSLRPGYKHSA 92

Query: 329 DTYGEIFLSVCRAGCFNEIRPLIELMK 409
             Y +IF +VCR G   E+  L+  MK
Sbjct: 93  TAYSQIFRTVCRTGLLGEVPDLLGSMK 119