BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023554
         (583 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528032.1| pentatricopeptide repeat-containing protein,...   295   4e-78
emb|CBI31329.3| unnamed protein product [Vitis vinifera]              295   5e-78
ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containi...   295   5e-78
emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]   295   5e-78
ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containi...   289   2e-76

>ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223532562|gb|EEF34350.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 730

 Score =  295 bits (755), Expect = 4e-78
 Identities = 141/194 (72%), Positives = 161/194 (82%)
 Frame = +2

Query: 2    EAQRIFDSMSVKDKVTYTSLIAGYGMQGRGHWALKLFDEMNMSGVKPDHIAMVAVLSACS 181
            EA+R+FDS+S +D+VTYTSLIAGYG+QG G  ALKLFDEM    +KPDH+ MVAVLSACS
Sbjct: 485  EAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHVTMVAVLSACS 544

Query: 182  HSGLVSQGEMLFEEMISVYKLNPRMEHFACMVDLFGRAGLLRKAAETIMGMPFSPSQAMW 361
            HSGLV++G  LFE M S Y + PR+EHFACMVDLFGRAGLL KA E I  MP+ PS AMW
Sbjct: 545  HSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAKEMITRMPYRPSSAMW 604

Query: 362  ATLIAACRIHGNTDIGEWAAEKLVEMRPNKSGYYVLIANMYAVAGRWNKLAHVRTLMRNS 541
            ATL+ ACRIHGN +IGEWAAEKL+EMRP  SGYYVLIANMYA AG W+KLA VRT MR+ 
Sbjct: 605  ATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYYVLIANMYAAAGCWSKLAKVRTYMRDL 664

Query: 542  GVRKAPGCTWIDIG 583
            GVRKAPGC W+D+G
Sbjct: 665  GVRKAPGCAWVDVG 678


>emb|CBI31329.3| unnamed protein product [Vitis vinifera]
          Length = 753

 Score =  295 bits (754), Expect = 5e-78
 Identities = 137/194 (70%), Positives = 160/194 (82%)
 Frame = +2

Query: 2    EAQRIFDSMSVKDKVTYTSLIAGYGMQGRGHWALKLFDEMNMSGVKPDHIAMVAVLSACS 181
            EA+R+FD +  +DK+TYTS+IAGYGMQG G  ALKLF+EMN   +KPDHI M+AVLSACS
Sbjct: 447  EARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACS 506

Query: 182  HSGLVSQGEMLFEEMISVYKLNPRMEHFACMVDLFGRAGLLRKAAETIMGMPFSPSQAMW 361
            HSGLV+QG++LFE+M S+Y L P +EHFACM DLFGRAGLL KA E I  MP+ P+ AMW
Sbjct: 507  HSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMW 566

Query: 362  ATLIAACRIHGNTDIGEWAAEKLVEMRPNKSGYYVLIANMYAVAGRWNKLAHVRTLMRNS 541
            ATLI ACRIH NT+IGEWAAEKL+EM+P   GYYVLIANMYA AG WNKLA VR  MR+ 
Sbjct: 567  ATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRIFMRDL 626

Query: 542  GVRKAPGCTWIDIG 583
            GVRKAPGC W+D+G
Sbjct: 627  GVRKAPGCAWVDVG 640


>ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71490-like
            [Vitis vinifera]
          Length = 748

 Score =  295 bits (754), Expect = 5e-78
 Identities = 137/194 (70%), Positives = 160/194 (82%)
 Frame = +2

Query: 2    EAQRIFDSMSVKDKVTYTSLIAGYGMQGRGHWALKLFDEMNMSGVKPDHIAMVAVLSACS 181
            EA+R+FD +  +DK+TYTS+IAGYGMQG G  ALKLF+EMN   +KPDHI M+AVLSACS
Sbjct: 492  EARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACS 551

Query: 182  HSGLVSQGEMLFEEMISVYKLNPRMEHFACMVDLFGRAGLLRKAAETIMGMPFSPSQAMW 361
            HSGLV+QG++LFE+M S+Y L P +EHFACM DLFGRAGLL KA E I  MP+ P+ AMW
Sbjct: 552  HSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMW 611

Query: 362  ATLIAACRIHGNTDIGEWAAEKLVEMRPNKSGYYVLIANMYAVAGRWNKLAHVRTLMRNS 541
            ATLI ACRIH NT+IGEWAAEKL+EM+P   GYYVLIANMYA AG WNKLA VR  MR+ 
Sbjct: 612  ATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRIFMRDL 671

Query: 542  GVRKAPGCTWIDIG 583
            GVRKAPGC W+D+G
Sbjct: 672  GVRKAPGCAWVDVG 685


>emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  295 bits (754), Expect = 5e-78
 Identities = 137/194 (70%), Positives = 160/194 (82%)
 Frame = +2

Query: 2    EAQRIFDSMSVKDKVTYTSLIAGYGMQGRGHWALKLFDEMNMSGVKPDHIAMVAVLSACS 181
            EA+R+FD +  +DK+TYTS+IAGYGMQG G  ALKLF+EMN   +KPDHI M+AVLSACS
Sbjct: 566  EARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACS 625

Query: 182  HSGLVSQGEMLFEEMISVYKLNPRMEHFACMVDLFGRAGLLRKAAETIMGMPFSPSQAMW 361
            HSGLV+QG++LFE+M S+Y L P +EHFACM DLFGRAGLL KA E I  MP+ P+ AMW
Sbjct: 626  HSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMW 685

Query: 362  ATLIAACRIHGNTDIGEWAAEKLVEMRPNKSGYYVLIANMYAVAGRWNKLAHVRTLMRNS 541
            ATLI ACRIH NT+IGEWAAEKL+EM+P   GYYVLIANMYA AG WNKLA VR  MR+ 
Sbjct: 686  ATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRXFMRDL 745

Query: 542  GVRKAPGCTWIDIG 583
            GVRKAPGC W+D+G
Sbjct: 746  GVRKAPGCAWVDVG 759


>ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71490-like
            [Cucumis sativus] gi|449481506|ref|XP_004156203.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At1g71490-like [Cucumis sativus]
          Length = 712

 Score =  289 bits (740), Expect = 2e-76
 Identities = 137/194 (70%), Positives = 161/194 (82%)
 Frame = +2

Query: 2    EAQRIFDSMSVKDKVTYTSLIAGYGMQGRGHWALKLFDEMNMSGVKPDHIAMVAVLSACS 181
            EA+RIF S+S KD+VTYTSLIAGYGMQG G  A++LF+EM    +KPDHI M+AVLSACS
Sbjct: 471  EAKRIFYSLSKKDEVTYTSLIAGYGMQGEGGKAVRLFEEMKRFQIKPDHITMIAVLSACS 530

Query: 182  HSGLVSQGEMLFEEMISVYKLNPRMEHFACMVDLFGRAGLLRKAAETIMGMPFSPSQAMW 361
            HSGLV+Q E+LF EM SV+ L+PR+EH+ACM DLFGR GLL KA E I  MP+ P+ A+W
Sbjct: 531  HSGLVNQAELLFAEMQSVHGLSPRLEHYACMADLFGRVGLLNKAKEIITRMPYRPTSAIW 590

Query: 362  ATLIAACRIHGNTDIGEWAAEKLVEMRPNKSGYYVLIANMYAVAGRWNKLAHVRTLMRNS 541
            ATLI AC IHGN DIGEWAAEKL+EMRP  SGYYVLIANMYA AG W+KLA +RTLMR+S
Sbjct: 591  ATLIGACCIHGNMDIGEWAAEKLLEMRPEHSGYYVLIANMYAAAGSWSKLAEIRTLMRDS 650

Query: 542  GVRKAPGCTWIDIG 583
            GV K PGC+W+D+G
Sbjct: 651  GVAKIPGCSWVDVG 664