BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023461
         (826 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, I...   209   6e-52
ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycin...   207   3e-51
gb|AFK38034.1| unknown [Lotus japonicus]                              206   5e-51
gb|ACF06443.1| DNA-directed RNA polymerases II 24 kDa polypeptid...   205   1e-50
ref|NP_001237497.1| uncharacterized protein LOC100306098 [Glycin...   204   1e-50

>ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1 isoform 1 [Vitis vinifera]
           gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC1 isoform 2
           [Vitis vinifera]
          Length = 206

 Score =  209 bits (532), Expect = 6e-52
 Identities = 118/208 (56%), Positives = 150/208 (72%)
 Frame = +2

Query: 2   RTVMQMLRDRGYEVDEETDINMSRTQFLEQFQFQGGKREELFIHKAKAPPDPANEDYEDR 181
           +TVMQML+DRGY V +  +INM++ QF+ +F  +  KRE+L I+KAK             
Sbjct: 16  KTVMQMLKDRGYFVGD-FEINMTKHQFVSKFG-ENMKREDLVINKAK------------- 60

Query: 182 LRDPSSDQIFVFFPDEPKKIGVKIMKACFARMSSENVFRAILVSQKALTPPANQAVKEMS 361
            R  SSDQI+VFFP+E +K+GVK MK    RM SENVFRAILV Q+ LTP A   + E+S
Sbjct: 61  -RTDSSDQIYVFFPEE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEIS 118

Query: 362 SKFHLEAFVDEELLVNINYHCLVPKHNVLSTKEKKALLHKYSLKETQLPRMKISDPIAKY 541
           +KFHLE F + ELLVNI  H LVP+H VL+++EKK LL +Y++KETQLPR+++SDPIA+Y
Sbjct: 119 TKFHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQVSDPIARY 178

Query: 542 HGLKCGQVVKITRKSVTAETYDTYRFVV 625
            GLK GQVVKI R S TA  Y TYR+VV
Sbjct: 179 FGLKRGQVVKIIRPSETAGRYITYRYVV 206


>ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycine max]
           gi|255625665|gb|ACU13177.1| unknown [Glycine max]
          Length = 206

 Score =  207 bits (526), Expect = 3e-51
 Identities = 116/208 (55%), Positives = 149/208 (71%)
 Frame = +2

Query: 2   RTVMQMLRDRGYEVDEETDINMSRTQFLEQFQFQGGKREELFIHKAKAPPDPANEDYEDR 181
           +TVMQMLRDRG+ V +  +INMS+ +F  ++  +  KRE+L I+K+K             
Sbjct: 16  KTVMQMLRDRGFLVGD-FEINMSKHEFKSKYG-EHMKREDLVINKSK------------- 60

Query: 182 LRDPSSDQIFVFFPDEPKKIGVKIMKACFARMSSENVFRAILVSQKALTPPANQAVKEMS 361
            +D S DQI+VFFPDEPK +GVK MK    RM+SENV+RAILV+Q  LTP A   + E+S
Sbjct: 61  -KDNSGDQIYVFFPDEPK-VGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEIS 118

Query: 362 SKFHLEAFVDEELLVNINYHCLVPKHNVLSTKEKKALLHKYSLKETQLPRMKISDPIAKY 541
           SKFHLE F + ELLVNI  H LVP+H VL+  EKK LL +Y++KETQLPR++++DP+A+Y
Sbjct: 119 SKFHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLPRIQVTDPVARY 178

Query: 542 HGLKCGQVVKITRKSVTAETYDTYRFVV 625
           +GLK GQVVKI R S TA  Y TYRFVV
Sbjct: 179 YGLKRGQVVKIIRPSETAGRYVTYRFVV 206


>gb|AFK38034.1| unknown [Lotus japonicus]
          Length = 206

 Score =  206 bits (524), Expect = 5e-51
 Identities = 118/208 (56%), Positives = 144/208 (69%)
 Frame = +2

Query: 2   RTVMQMLRDRGYEVDEETDINMSRTQFLEQFQFQGGKREELFIHKAKAPPDPANEDYEDR 181
           +TVMQMLRDR Y V +  +INMSR +F  ++     KRE+L I+K K             
Sbjct: 16  KTVMQMLRDRNYLVGD-FEINMSRHEFKTKYG-DNMKREDLTINKTK------------- 60

Query: 182 LRDPSSDQIFVFFPDEPKKIGVKIMKACFARMSSENVFRAILVSQKALTPPANQAVKEMS 361
            +D  SDQI+VFFPDEPK +GVK MK    RM+SENVFRAILV Q  LTP A   + EMS
Sbjct: 61  -KDGPSDQIYVFFPDEPK-VGVKTMKTYTNRMNSENVFRAILVCQSNLTPFAKTCISEMS 118

Query: 362 SKFHLEAFVDEELLVNINYHCLVPKHNVLSTKEKKALLHKYSLKETQLPRMKISDPIAKY 541
           SKF LE F + ELLVNI  H LVP+H +L+  EKK LL +Y++KETQLPR++I+DP+A+Y
Sbjct: 119 SKFQLEVFQEAELLVNIKEHVLVPEHQILNETEKKTLLERYTVKETQLPRIQITDPVARY 178

Query: 542 HGLKCGQVVKITRKSVTAETYDTYRFVV 625
           +GLK GQVVKI R S TA  Y TYRFVV
Sbjct: 179 YGLKRGQVVKIIRPSETAGRYITYRFVV 206


>gb|ACF06443.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Elaeis
           guineensis]
          Length = 204

 Score =  205 bits (521), Expect = 1e-50
 Identities = 119/208 (57%), Positives = 151/208 (72%)
 Frame = +2

Query: 2   RTVMQMLRDRGYEVDEETDINMSRTQFLEQFQFQGGKREELFIHKAKAPPDPANEDYEDR 181
           RTVMQMLRDRGY V  + +INM++ QFLE+F  +G KRE+L I+KAK   DPA       
Sbjct: 14  RTVMQMLRDRGYLV-LDLEINMNKLQFLEKFG-EGVKREDLVINKAKKN-DPA------- 63

Query: 182 LRDPSSDQIFVFFPDEPKKIGVKIMKACFARMSSENVFRAILVSQKALTPPANQAVKEMS 361
                 DQI+VFFP++ K +GVK +K    RM +ENV R ILV Q+ALTP A Q++ E+S
Sbjct: 64  ------DQIYVFFPNDAK-VGVKQIKQYVERMKAENVTRGILVVQQALTPFARQSLAEVS 116

Query: 362 SKFHLEAFVDEELLVNINYHCLVPKHNVLSTKEKKALLHKYSLKETQLPRMKISDPIAKY 541
            K+ LE F D ELLVNI  H LVP+H VL+++EKK LL +Y+LKETQLPR++++DPIA+Y
Sbjct: 117 QKYMLEVFQDTELLVNIKEHVLVPEHQVLTSEEKKTLLERYTLKETQLPRIQVTDPIARY 176

Query: 542 HGLKCGQVVKITRKSVTAETYDTYRFVV 625
           +GLK GQVVKI R S TA  Y TYR+VV
Sbjct: 177 YGLKRGQVVKIIRPSETAGRYVTYRYVV 204


>ref|NP_001237497.1| uncharacterized protein LOC100306098 [Glycine max]
           gi|255627545|gb|ACU14117.1| unknown [Glycine max]
          Length = 206

 Score =  204 bits (520), Expect = 1e-50
 Identities = 115/208 (55%), Positives = 148/208 (71%)
 Frame = +2

Query: 2   RTVMQMLRDRGYEVDEETDINMSRTQFLEQFQFQGGKREELFIHKAKAPPDPANEDYEDR 181
           +TVMQMLRDR + V +  +INMS+ +F  ++  +  KRE+L I+K+K             
Sbjct: 16  KTVMQMLRDRNFLVGD-FEINMSKHEFKSKYG-EHMKREDLVINKSK------------- 60

Query: 182 LRDPSSDQIFVFFPDEPKKIGVKIMKACFARMSSENVFRAILVSQKALTPPANQAVKEMS 361
            +D S DQI+VFFPDEPK +GVK MK    RM+SENV+RAILV+Q  LTP A   + E+S
Sbjct: 61  -KDNSGDQIYVFFPDEPK-VGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEIS 118

Query: 362 SKFHLEAFVDEELLVNINYHCLVPKHNVLSTKEKKALLHKYSLKETQLPRMKISDPIAKY 541
           SKFHLE F + ELLVNI  H LVP+H VL+  EKK LL +Y++KETQLPR++++DP+A+Y
Sbjct: 119 SKFHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLPRIQVTDPVARY 178

Query: 542 HGLKCGQVVKITRKSVTAETYDTYRFVV 625
           +GLK GQVVKI R S TA  Y TYRFVV
Sbjct: 179 YGLKRGQVVKIIRPSETAGRYVTYRFVV 206