BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023118
         (344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]               86   4e-25
emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]            75   2e-22
emb|CAE05450.3| OSJNBa0073E02.10 [Oryza sativa Japonica Group]         74   4e-22
gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sa...    77   8e-22
gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sat...    77   1e-21

>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score = 85.9 bits (211), Expect(2) = 4e-25
 Identities = 39/59 (66%), Positives = 47/59 (79%)
 Frame = +3

Query: 138  PVFHARTKHIEVDFHYIRELVTNKVLELKYVCTEDQTADIFTKGLSTSRLQFLQNKLSI 314
            PVFH+RTKHIEVD+HY+R+ V  + L + YV T DQTADIFTKGLST R QFL +KL +
Sbjct: 1307 PVFHSRTKHIEVDYHYVRDKVVRQELAVSYVSTADQTADIFTKGLSTQRFQFLASKLPV 1365



 Score = 53.9 bits (128), Expect(2) = 4e-25
 Identities = 25/45 (55%), Positives = 34/45 (75%)
 Frame = +2

Query: 2    STEAEYRTLATTAVEIFWLCTLLKDLHIFLPKPPVMWCDNLSAIA 136
            S EAEYR LA TA E+ WL +L +DL++FL  P + WCDN+S+I+
Sbjct: 1259 SAEAEYRQLAYTAAELSWLRSLFRDLNVFLSCPRI-WCDNISSIS 1302


>emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]
          Length = 1087

 Score = 75.1 bits (183), Expect(2) = 2e-22
 Identities = 32/70 (45%), Positives = 51/70 (72%)
 Frame = +3

Query: 120  T*VQLRPVFHARTKHIEVDFHYIRELVTNKVLELKYVCTEDQTADIFTKGLSTSRLQFLQ 299
            T +   PVFHARTKHIEVD+H++RE V  ++L+++++ + DQ AD FTK  S S+LQ  +
Sbjct: 1014 TYLSANPVFHARTKHIEVDYHFVRERVVQRLLDIRFISSGDQLADGFTKAQSLSKLQIFR 1073

Query: 300  NKLSIVPLVV 329
            N L++  +++
Sbjct: 1074 NNLNLCKVMI 1083



 Score = 55.8 bits (133), Expect(2) = 2e-22
 Identities = 23/43 (53%), Positives = 30/43 (69%)
 Frame = +2

Query: 2    STEAEYRTLATTAVEIFWLCTLLKDLHIFLPKPPVMWCDNLSA 130
            STEAEY+ LA    E+ W+ TLLK+L +  PK  V+WCDN+ A
Sbjct: 971  STEAEYKALANATAEVIWIQTLLKELGVSQPKAAVLWCDNIGA 1013


>emb|CAE05450.3| OSJNBa0073E02.10 [Oryza sativa Japonica Group]
          Length = 1131

 Score = 73.6 bits (179), Expect(2) = 4e-22
 Identities = 31/70 (44%), Positives = 51/70 (72%)
 Frame = +3

Query: 120  T*VQLRPVFHARTKHIEVDFHYIRELVTNKVLELKYVCTEDQTADIFTKGLSTSRLQFLQ 299
            T +   PVFHARTKHIEVD+H++RE V  ++L+++++ + DQ AD FTK  S S+L+  +
Sbjct: 848  TYLSANPVFHARTKHIEVDYHFVRERVVQRLLDIRFISSGDQLADGFTKAQSLSKLRIFR 907

Query: 300  NKLSIVPLVV 329
            N L++  +++
Sbjct: 908  NNLNLCEVMI 917



 Score = 55.8 bits (133), Expect(2) = 4e-22
 Identities = 23/43 (53%), Positives = 30/43 (69%)
 Frame = +2

Query: 2   STEAEYRTLATTAVEIFWLCTLLKDLHIFLPKPPVMWCDNLSA 130
           STEAEY+ LA    E+ W+ TLLK+L +  PK  V+WCDN+ A
Sbjct: 805 STEAEYKALANATAEVIWIQTLLKELGVSQPKAAVLWCDNIGA 847


>gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|31433472|gb|AAP54977.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1031

 Score = 77.0 bits (188), Expect(2) = 8e-22
 Identities = 33/59 (55%), Positives = 47/59 (79%)
 Frame = +3

Query: 138  PVFHARTKHIEVDFHYIRELVTNKVLELKYVCTEDQTADIFTKGLSTSRLQFLQNKLSI 314
            PVFHARTKHIEVD+H++RE V  K+L+++Y+ T+DQ AD FTK LS  +L+  +N L++
Sbjct: 969  PVFHARTKHIEVDYHFVRERVARKLLQVEYISTKDQVADGFTKTLSVRQLEMFRNNLNL 1027



 Score = 51.6 bits (122), Expect(2) = 8e-22
 Identities = 23/43 (53%), Positives = 29/43 (67%)
 Frame = +2

Query: 2    STEAEYRTLATTAVEIFWLCTLLKDLHIFLPKPPVMWCDNLSA 130
            STEAEY+ LA    EI W+ TLL +L I +PK   +WCDN+ A
Sbjct: 920  STEAEYKALANATAEIMWIQTLLHELGIQVPKIAKVWCDNIGA 962


>gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sativa]
            gi|31430072|gb|AAP52036.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1058

 Score = 77.4 bits (189), Expect(2) = 1e-21
 Identities = 36/71 (50%), Positives = 51/71 (71%)
 Frame = +3

Query: 120  T*VQLRPVFHARTKHIEVDFHYIRELVTNKVLELKYVCTEDQTADIFTKGLSTSRLQFLQ 299
            T + + PVFHARTKHIE+D+H++RE V  K L L++V ++DQ AD FTK L   +LQ  +
Sbjct: 984  TYLSVNPVFHARTKHIEIDYHFVREQVAQKQLALQFVPSQDQVADGFTKALPVRQLQMFR 1043

Query: 300  NKLSIVPLVVR 332
            N L++V L +R
Sbjct: 1044 NNLNLVDLRLR 1054



 Score = 50.8 bits (120), Expect(2) = 1e-21
 Identities = 23/48 (47%), Positives = 30/48 (62%)
 Frame = +2

Query: 2    STEAEYRTLATTAVEIFWLCTLLKDLHIFLPKPPVMWCDNLSAIASSI 145
            STEAEY+ LA    EI W+  LL++L I  P P  +WCDN+ A   S+
Sbjct: 941  STEAEYKALANATAEIMWVRKLLEELGISHPGPSQLWCDNIGATYLSV 988