BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00023025
         (385 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275213.2| PREDICTED: pentatricopeptide repeat-containi...   211   6e-53
emb|CAN76113.1| hypothetical protein VITISV_005528 [Vitis vinifera]   211   6e-53
ref|XP_002519998.1| pentatricopeptide repeat-containing protein,...   207   7e-52
ref|XP_003516740.1| PREDICTED: pentatricopeptide repeat-containi...   196   2e-48
ref|XP_003538664.1| PREDICTED: pentatricopeptide repeat-containi...   194   8e-48

>ref|XP_002275213.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Vitis vinifera]
          Length = 494

 Score =  211 bits (536), Expect = 6e-53
 Identities = 93/127 (73%), Positives = 116/127 (91%)
 Frame = -2

Query: 381 NSNVYSKIIGLYRDNGLWKKAIDLMREMRETGVPLDRRVYNSIIDTLGKSGELNEAVQVF 202
           +S VYSK+IG+YRDNG+WKKA++++RE+RE GV LD+R+YNSIIDT GK GEL+EA++VF
Sbjct: 162 DSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVF 221

Query: 201 QNMQREGINPDIVTWNSLIRWHCKAGDVSKALEFFTKMQEQGLYPDPKIFVTIISRLGEE 22
           + MQ EG+ PDI+TWNSLI+WHCKAGDV KALE F+KMQE+GLYPDPKIF+TIISRLGE+
Sbjct: 222 EKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITIISRLGEQ 281

Query: 21  GKWGLIK 1
           GKW +IK
Sbjct: 282 GKWDVIK 288



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 27/108 (25%), Positives = 61/108 (56%)
 Frame = -2

Query: 381 NSNVYSKIIGLYRDNGLWKKAIDLMREMRETGVPLDRRVYNSIIDTLGKSGELNEAVQVF 202
           +++++  +   Y   GL ++ + +++ M   G+  +  + N +I+  G +G   EA+ V+
Sbjct: 337 SASMFCVLANAYAQQGLCEQTVKVLQLMETEGIEPNLIMLNMLINAFGIAGRHLEALSVY 396

Query: 201 QNMQREGINPDIVTWNSLIRWHCKAGDVSKALEFFTKMQEQGLYPDPK 58
            +++  GI+PD+VT+++L++   +A    K  E + +M+  G  PD K
Sbjct: 397 HHIKDTGISPDVVTYSTLMKACIRARKFDKVPEIYEEMESAGCTPDRK 444


>emb|CAN76113.1| hypothetical protein VITISV_005528 [Vitis vinifera]
          Length = 466

 Score =  211 bits (536), Expect = 6e-53
 Identities = 93/127 (73%), Positives = 116/127 (91%)
 Frame = -2

Query: 381 NSNVYSKIIGLYRDNGLWKKAIDLMREMRETGVPLDRRVYNSIIDTLGKSGELNEAVQVF 202
           +S VYSK+IG+YRDNG+WKKA++++RE+RE GV LD+R+YNSIIDT GK GEL+EA++VF
Sbjct: 181 DSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVF 240

Query: 201 QNMQREGINPDIVTWNSLIRWHCKAGDVSKALEFFTKMQEQGLYPDPKIFVTIISRLGEE 22
           + MQ EG+ PDI+TWNSLI+WHCKAGDV KALE F+KMQE+GLYPDPKIF+TIISRLGE+
Sbjct: 241 EKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITIISRLGEQ 300

Query: 21  GKWGLIK 1
           GKW +IK
Sbjct: 301 GKWDVIK 307


>ref|XP_002519998.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540762|gb|EEF42322.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 498

 Score =  207 bits (527), Expect = 7e-52
 Identities = 94/128 (73%), Positives = 113/128 (88%)
 Frame = -2

Query: 384 LNSNVYSKIIGLYRDNGLWKKAIDLMREMRETGVPLDRRVYNSIIDTLGKSGELNEAVQV 205
           LNS VYSK+IGLYRDNG+WKKAI ++ E+RE G+PLD+ +YNSIIDT GK GEL+EA++V
Sbjct: 159 LNSFVYSKVIGLYRDNGMWKKAIGIIEEIREMGMPLDKHIYNSIIDTFGKYGELDEALEV 218

Query: 204 FQNMQREGINPDIVTWNSLIRWHCKAGDVSKALEFFTKMQEQGLYPDPKIFVTIISRLGE 25
             NMQ++GI PDIVTWNSLIRWHCKAG++SKALE F+KMQ QGLYPDPKI VTIISRL E
Sbjct: 219 LSNMQQQGITPDIVTWNSLIRWHCKAGNLSKALELFSKMQAQGLYPDPKILVTIISRLAE 278

Query: 24  EGKWGLIK 1
           +GKW +I+
Sbjct: 279 QGKWNIIR 286



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 26/108 (24%), Positives = 63/108 (58%)
 Frame = -2

Query: 381 NSNVYSKIIGLYRDNGLWKKAIDLMREMRETGVPLDRRVYNSIIDTLGKSGELNEAVQVF 202
           +++++  +   Y   GL ++ + +++ M   G+  +  + N +I+  G +G   EA+ ++
Sbjct: 335 SASMFCVLANAYAQQGLCEQTVKVLQLMEAEGIEPNLIMLNVLINAFGIAGRHREALSIY 394

Query: 201 QNMQREGINPDIVTWNSLIRWHCKAGDVSKALEFFTKMQEQGLYPDPK 58
            +M+  GI+PD+VT+++L++ + +A    +  E +++M+  G  PD K
Sbjct: 395 HHMKESGISPDVVTYSTLMKAYIRARKFDEVPEIYSEMESSGCTPDKK 442


>ref|XP_003516740.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 554

 Score =  196 bits (497), Expect = 2e-48
 Identities = 86/128 (67%), Positives = 109/128 (85%)
 Frame = -2

Query: 384 LNSNVYSKIIGLYRDNGLWKKAIDLMREMRETGVPLDRRVYNSIIDTLGKSGELNEAVQV 205
           LNS VYSK++G+YRDNG+WKKAI+++ E+RE G+ LD  + NSIIDT GK GEL+EA+++
Sbjct: 219 LNSFVYSKVVGIYRDNGMWKKAIEVLEEIRERGISLDTHICNSIIDTFGKYGELDEALKL 278

Query: 204 FQNMQREGINPDIVTWNSLIRWHCKAGDVSKALEFFTKMQEQGLYPDPKIFVTIISRLGE 25
           F+ MQ+EG+ P+IVTWNSLI+WHCK GD  K+   FT MQEQGLYPDPKIFVTIIS +GE
Sbjct: 279 FKKMQKEGVRPNIVTWNSLIKWHCKEGDFMKSFHLFTDMQEQGLYPDPKIFVTIISCMGE 338

Query: 24  EGKWGLIK 1
           +GKWG+IK
Sbjct: 339 QGKWGIIK 346



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 28/111 (25%), Positives = 58/111 (52%)
 Frame = -2

Query: 372 VYSKIIGLYRDNGLWKKAIDLMREMRETGVPLDRRVYNSIIDTLGKSGELNEAVQVFQNM 193
           VY+ ++ +Y   G ++ A + ++ ++  GV +   ++  + +   + G   + + V Q M
Sbjct: 363 VYAVLVDIYGQYGKFQNARECVQALKSEGVLVSPSIFCVLANAYAQQGLCEQVIMVLQIM 422

Query: 192 QREGINPDIVTWNSLIRWHCKAGDVSKALEFFTKMQEQGLYPDPKIFVTII 40
           + EGI P+IV  N LI     AG   +A+  +  ++E G+ PD   + T++
Sbjct: 423 EAEGIEPNIVMLNMLINAFGNAGRYMEAMSVYHHIKESGVSPDVVTYTTLM 473


>ref|XP_003538664.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 881

 Score =  194 bits (492), Expect = 8e-48
 Identities = 86/128 (67%), Positives = 108/128 (84%)
 Frame = -2

Query: 384 LNSNVYSKIIGLYRDNGLWKKAIDLMREMRETGVPLDRRVYNSIIDTLGKSGELNEAVQV 205
           LNS +YSK++G+YRDNG+WKKAI+++ E+RE G+ LD  + NSIIDT GK GEL+EA+++
Sbjct: 222 LNSFMYSKVVGIYRDNGMWKKAIEVLEEIRERGISLDTHICNSIIDTFGKYGELDEALKL 281

Query: 204 FQNMQREGINPDIVTWNSLIRWHCKAGDVSKALEFFTKMQEQGLYPDPKIFVTIISRLGE 25
           F+ MQ+EG+ P+IVTWNSLI+WHCK GD  KA   FT MQEQGLYPDPKIFVTIIS LGE
Sbjct: 282 FKKMQKEGVRPNIVTWNSLIKWHCKEGDFMKAFHLFTDMQEQGLYPDPKIFVTIISCLGE 341

Query: 24  EGKWGLIK 1
           +GKW +IK
Sbjct: 342 QGKWDIIK 349



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 25/109 (22%), Positives = 59/109 (54%)
 Frame = -2

Query: 384 LNSNVYSKIIGLYRDNGLWKKAIDLMREMRETGVPLDRRVYNSIIDTLGKSGELNEAVQV 205
           ++ +++  +   Y   GL ++ I +++ M   G+  +  + N +I+  G +G   EA+ V
Sbjct: 397 VSPSIFCVLANAYAQQGLCEQVIMVLQIMEAEGIEPNIVMLNMLINAFGNAGRYMEAISV 456

Query: 204 FQNMQREGINPDIVTWNSLIRWHCKAGDVSKALEFFTKMQEQGLYPDPK 58
           + +++  G++PD+VT+ +L++   +A    +    + +M+  G  PD K
Sbjct: 457 YHHIKESGVSPDVVTYTTLMKAFIRAKKFDEVPIIYKEMENDGCTPDRK 505



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 28/111 (25%), Positives = 58/111 (52%)
 Frame = -2

Query: 372 VYSKIIGLYRDNGLWKKAIDLMREMRETGVPLDRRVYNSIIDTLGKSGELNEAVQVFQNM 193
           VY+ ++ +Y   G ++ A + ++ ++  GV +   ++  + +   + G   + + V Q M
Sbjct: 366 VYAVLVDIYGQYGKFQNAGECVQALKSEGVLVSPSIFCVLANAYAQQGLCEQVIMVLQIM 425

Query: 192 QREGINPDIVTWNSLIRWHCKAGDVSKALEFFTKMQEQGLYPDPKIFVTII 40
           + EGI P+IV  N LI     AG   +A+  +  ++E G+ PD   + T++
Sbjct: 426 EAEGIEPNIVMLNMLINAFGNAGRYMEAISVYHHIKESGVSPDVVTYTTLM 476