BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022690
         (967 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI34953.3| unnamed protein product [Vitis vinifera]              389   e-106
ref|XP_002275112.1| PREDICTED: DNA repair protein UVH3-like [Vit...   389   e-106
ref|XP_002875418.1| predicted protein [Arabidopsis lyrata subsp....   359   6e-97
ref|XP_002517370.1| DNA-repair protein UVH3, putative [Ricinus c...   359   6e-97
ref|NP_566830.1| DNA repair protein UVH3 [Arabidopsis thaliana] ...   353   3e-95

>emb|CBI34953.3| unnamed protein product [Vitis vinifera]
          Length = 1449

 Score =  389 bits (999), Expect = e-106
 Identities = 211/312 (67%), Positives = 235/312 (75%)
 Frame = -1

Query: 937 MGVHGLWELLSPVGRRVSVETLAGKKLAIDASIWMVQFIKAMRDEKGEMARNAHILGFFR 758
           MGVHGLWELL+PVGRRVSVETLAGK+LAIDASIWM+QF+KAMRDEKGEM RN H+LGFFR
Sbjct: 1   MGVHGLWELLAPVGRRVSVETLAGKRLAIDASIWMIQFMKAMRDEKGEMVRNGHLLGFFR 60

Query: 757 RICKLLFLRTMPVFVFDGGTPAIKRRTVIARRRFKENAQGKIRKTAEKLLLNHLKAMRVK 578
           RICKLLFLRT PVFVFDGGTPA+KRRTV+ARRR +ENAQ KIRKTAEKLLLNHLKAMR+K
Sbjct: 61  RICKLLFLRTKPVFVFDGGTPALKRRTVVARRRQRENAQAKIRKTAEKLLLNHLKAMRLK 120

Query: 577 ELAEKLEEQRKENEIKGKNVVGEIEKDIEKGKDVALELEKAKVDLKGKGVLLEDDEVGGD 398
           ELA+ LE QR  N  KGK                               VL    E  G+
Sbjct: 121 ELAKDLENQRLNNNDKGKK------------------------------VLSYQTETAGE 150

Query: 397 SMKGNGTTSQRYDQQTLDAMLAASLAAEEDGGLGGTASNSDHNGISXXXXXXXXXEMILP 218
             +GN + S  Y+Q+ LD MLAASLAAEEDG   G A  S+              EM+LP
Sbjct: 151 VSEGNSSVSGTYNQEKLDEMLAASLAAEEDGNFVGDAGISNEE----DDDDDEDEEMMLP 206

Query: 217 VMHGKVDPAILAALPPSMQLDLLVQMRERLMAENRQKYQKVKKAPEKFSELQIQSYLKTV 38
           +M+GKVDPA+LAALPPSMQLDLLVQMRE+LMAENRQKYQKVKKAP +FSELQIQ+YLKTV
Sbjct: 207 IMNGKVDPAVLAALPPSMQLDLLVQMREKLMAENRQKYQKVKKAPAEFSELQIQAYLKTV 266

Query: 37  AFRREINEVQKS 2
           AFRREI+EVQKS
Sbjct: 267 AFRREIDEVQKS 278


>ref|XP_002275112.1| PREDICTED: DNA repair protein UVH3-like [Vitis vinifera]
          Length = 1513

 Score =  389 bits (999), Expect = e-106
 Identities = 211/312 (67%), Positives = 235/312 (75%)
 Frame = -1

Query: 937 MGVHGLWELLSPVGRRVSVETLAGKKLAIDASIWMVQFIKAMRDEKGEMARNAHILGFFR 758
           MGVHGLWELL+PVGRRVSVETLAGK+LAIDASIWM+QF+KAMRDEKGEM RN H+LGFFR
Sbjct: 1   MGVHGLWELLAPVGRRVSVETLAGKRLAIDASIWMIQFMKAMRDEKGEMVRNGHLLGFFR 60

Query: 757 RICKLLFLRTMPVFVFDGGTPAIKRRTVIARRRFKENAQGKIRKTAEKLLLNHLKAMRVK 578
           RICKLLFLRT PVFVFDGGTPA+KRRTV+ARRR +ENAQ KIRKTAEKLLLNHLKAMR+K
Sbjct: 61  RICKLLFLRTKPVFVFDGGTPALKRRTVVARRRQRENAQAKIRKTAEKLLLNHLKAMRLK 120

Query: 577 ELAEKLEEQRKENEIKGKNVVGEIEKDIEKGKDVALELEKAKVDLKGKGVLLEDDEVGGD 398
           ELA+ LE QR  N  KGK                               VL    E  G+
Sbjct: 121 ELAKDLENQRLNNNDKGKK------------------------------VLSYQTETAGE 150

Query: 397 SMKGNGTTSQRYDQQTLDAMLAASLAAEEDGGLGGTASNSDHNGISXXXXXXXXXEMILP 218
             +GN + S  Y+Q+ LD MLAASLAAEEDG   G A  S+              EM+LP
Sbjct: 151 VSEGNSSVSGTYNQEKLDEMLAASLAAEEDGNFVGDAGISNEE----DDDDDEDEEMMLP 206

Query: 217 VMHGKVDPAILAALPPSMQLDLLVQMRERLMAENRQKYQKVKKAPEKFSELQIQSYLKTV 38
           +M+GKVDPA+LAALPPSMQLDLLVQMRE+LMAENRQKYQKVKKAP +FSELQIQ+YLKTV
Sbjct: 207 IMNGKVDPAVLAALPPSMQLDLLVQMREKLMAENRQKYQKVKKAPAEFSELQIQAYLKTV 266

Query: 37  AFRREINEVQKS 2
           AFRREI+EVQKS
Sbjct: 267 AFRREIDEVQKS 278


>ref|XP_002875418.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
            gi|297321256|gb|EFH51677.1| predicted protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 1463

 Score =  359 bits (921), Expect = 6e-97
 Identities = 208/348 (59%), Positives = 245/348 (70%), Gaps = 36/348 (10%)
 Frame = -1

Query: 937  MGVHGLWELLSPVGRRVSVETLAGKKLAIDASIWMVQFIKAMRDEKGEMARNAHILGFFR 758
            MGV GLWELL+PVGRRVSVETLA K+LAIDASIWMVQFIKAMRDE G+M +NAH++GFFR
Sbjct: 1    MGVQGLWELLAPVGRRVSVETLANKRLAIDASIWMVQFIKAMRDENGDMVQNAHLIGFFR 60

Query: 757  RICKLLFLRTMPVFVFDGGTPAIKRRTVIARRRFKENAQGKIRKTAEKLLLNHLKAMRVK 578
            RICKLLFLRT P+FVFDG TPA+KRRTVIARRR +ENAQ KIRKTAEKLLLN LK +R+K
Sbjct: 61   RICKLLFLRTKPIFVFDGATPALKRRTVIARRRQRENAQTKIRKTAEKLLLNRLKDIRLK 120

Query: 577  ELAEKLEEQR----------------------------KENEIKGKNVVGEIEKDIEKGK 482
            E A+ ++ QR                            K +E+   ++VGE     E G 
Sbjct: 121  EQAKDIKNQRLKQDDSDRVKKRVSSDSVEDNLRVPEEEKLDEVSPASLVGE-----ENGV 175

Query: 481  DVALELEKAKVDLKGKGVLLEDDEVGGDSMKGN----GTTSQRYDQQTLDAMLAASLAAE 314
            D  ++ E  K D KGKGVLL+ D++  + MK N     +   +  Q+ LD MLAASLAAE
Sbjct: 176  DDIVK-ELTKDDPKGKGVLLDGDDL-DNKMKSNLEQDSSVQGKDYQEKLDEMLAASLAAE 233

Query: 313  EDGGLGGTASNS----DHNGISXXXXXXXXXEMILPVMHGKVDPAILAALPPSMQLDLLV 146
            E+G     AS S                   E++LPVM G +DPA+LA+LPPSMQLDLLV
Sbjct: 234  EEGNFTSKASTSAAAIPSEEEDEDEDSDEDEEILLPVMDGNIDPAVLASLPPSMQLDLLV 293

Query: 145  QMRERLMAENRQKYQKVKKAPEKFSELQIQSYLKTVAFRREINEVQKS 2
            QMRE+LMAENRQKYQKVKKAPEKFSELQI++YLKTVAFRREINEVQ+S
Sbjct: 294  QMREKLMAENRQKYQKVKKAPEKFSELQIEAYLKTVAFRREINEVQRS 341


>ref|XP_002517370.1| DNA-repair protein UVH3, putative [Ricinus communis]
            gi|223543381|gb|EEF44912.1| DNA-repair protein UVH3,
            putative [Ricinus communis]
          Length = 1641

 Score =  359 bits (921), Expect = 6e-97
 Identities = 206/349 (59%), Positives = 251/349 (71%), Gaps = 37/349 (10%)
 Frame = -1

Query: 937  MGVHGLWELLSPVGRRVSVETLAGKKLAIDASIWMVQFIKAMRDEKGEMARNAHILGFFR 758
            MGV GLW+LL+PVGRRVSVETL+GKKLAIDASIW+VQF+KAMR+EKGEM RNAH+LGFFR
Sbjct: 1    MGVQGLWDLLAPVGRRVSVETLSGKKLAIDASIWIVQFMKAMRNEKGEMVRNAHLLGFFR 60

Query: 757  RICKLLFLRTMPVFVFDGGTPAIKRRTVIARRRFKENAQGKIRKTAEKLLLNHLKAMRVK 578
            RICKLL+LRT PVFVFDG TPA+KRRTVIARRR +E+AQ KIRKTAEKLLLNHLK+MR+K
Sbjct: 61   RICKLLYLRTKPVFVFDGATPALKRRTVIARRRQRESAQAKIRKTAEKLLLNHLKSMRLK 120

Query: 577  ELAEKLEEQRKENEI---KGKNVVGEIEK------DIEK-GKDVALELEKAKVDLKG--- 437
            ELA+ LE QR++ +I   KGK ++ E  K      D+E   +++  E+  A +  +    
Sbjct: 121  ELAKDLENQRRKQKIDDAKGKKILLEESKIENNDEDVENYDQEILDEMLAASIAAEDERR 180

Query: 436  ------------------------KGVLLEDDEVGGDSMKGNGTTSQRYDQQTLDAMLAA 329
                                    K VL++  ++    ++ +   ++ Y+Q+ LD MLAA
Sbjct: 181  FSNTASASAVQDPENEDHTSNGNVKEVLIDLIDMERTDLERDDVVAESYNQEKLDEMLAA 240

Query: 328  SLAAEEDGGLGGTASNSDHNGISXXXXXXXXXEMILPVMHGKVDPAILAALPPSMQLDLL 149
            S+AAEED     TAS S     S         EMILP + GKVDP +LAALPPSMQLDLL
Sbjct: 241  SIAAEEDVISINTASTSAAAIPSEEEGNDEVEEMILPEICGKVDPTVLAALPPSMQLDLL 300

Query: 148  VQMRERLMAENRQKYQKVKKAPEKFSELQIQSYLKTVAFRREINEVQKS 2
            VQMRERL+AENRQKYQKVKKAPEKFSELQI++YLKTVAFRREI+ VQK+
Sbjct: 301  VQMRERLIAENRQKYQKVKKAPEKFSELQIEAYLKTVAFRREIDHVQKA 349


>ref|NP_566830.1| DNA repair protein UVH3 [Arabidopsis thaliana]
            gi|56749787|sp|Q9ATY5.1|UVH3_ARATH RecName: Full=DNA
            repair protein UVH3; AltName: Full=ERCC5 homolog;
            AltName: Full=RAD2 homolog; Short=AtRAD2; Short=AtUVH3;
            Short=AtXPG; AltName: Full=UV hypersensitive protein 3;
            AltName: Full=XPG homolog gi|13649704|gb|AAK37472.1| UV
            hypersensitive protein [Arabidopsis thaliana]
            gi|332643872|gb|AEE77393.1| DNA repair protein UVH3
            [Arabidopsis thaliana]
          Length = 1479

 Score =  353 bits (906), Expect = 3e-95
 Identities = 202/348 (58%), Positives = 245/348 (70%), Gaps = 36/348 (10%)
 Frame = -1

Query: 937  MGVHGLWELLSPVGRRVSVETLAGKKLAIDASIWMVQFIKAMRDEKGEMARNAHILGFFR 758
            MGV GLWELL+PVGRRVSVETLA K+LAIDASIWMVQFIKAMRDEKG+M +NAH++GFFR
Sbjct: 1    MGVQGLWELLAPVGRRVSVETLANKRLAIDASIWMVQFIKAMRDEKGDMVQNAHLIGFFR 60

Query: 757  RICKLLFLRTMPVFVFDGGTPAIKRRTVIARRRFKENAQGKIRKTAEKLLLNHLKAMRVK 578
            RICKLLFLRT P+FVFDG TPA+KRRTVIARRR +ENAQ KIRKTAEKLLLN LK +R+K
Sbjct: 61   RICKLLFLRTKPIFVFDGATPALKRRTVIARRRQRENAQTKIRKTAEKLLLNRLKDIRLK 120

Query: 577  ELAEKLEEQRKENE----IKGKNVVGEIEKDI---------------------------- 494
            E A+ ++ QR + +    +K +     +E ++                            
Sbjct: 121  EQAKDIKNQRLKQDDSDRVKKRVSSDSVEDNLRVPVEEDDVGASFFQEEKLDEVSQASLV 180

Query: 493  -EKGKDVALELEKAKVDLKGKGVLLEDDEVGGDSMKGNGTTSQRYDQQTLDAMLAASLAA 317
             E G D  ++ E  K D KGKGVLL+ D++  D++  + +   +  Q+ LD MLAASLAA
Sbjct: 181  GETGVDDVVK-ESVKDDPKGKGVLLDGDDL--DNLVQDSSVQGKDYQEKLDEMLAASLAA 237

Query: 316  EEDGGLGGTASNSD---HNGISXXXXXXXXXEMILPVMHGKVDPAILAALPPSMQLDLLV 146
            EE+      AS S     +            E++LPVM G +DPA+LA+LPPSMQLDLL 
Sbjct: 238  EEERNFTSKASTSAAAIPSEEDEEEDSDGDEEILLPVMDGNIDPAVLASLPPSMQLDLLA 297

Query: 145  QMRERLMAENRQKYQKVKKAPEKFSELQIQSYLKTVAFRREINEVQKS 2
            QMRE+LMAENRQKYQKVKKAPEKFSELQI++YLKTVAFRREINEVQ+S
Sbjct: 298  QMREKLMAENRQKYQKVKKAPEKFSELQIEAYLKTVAFRREINEVQRS 345