BLASTX nr result
ID: Coptis24_contig00022489
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00022489
(548 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containi... 154 2e-62
emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera] 154 2e-62
ref|XP_002311156.1| predicted protein [Populus trichocarpa] gi|2... 139 2e-54
ref|XP_003599019.1| Pentatricopeptide repeat-containing protein ... 129 1e-51
ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containi... 139 2e-51
>ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Vitis vinifera]
Length = 1005
Score = 154 bits (390), Expect(2) = 2e-62
Identities = 73/107 (68%), Positives = 87/107 (81%)
Frame = +1
Query: 226 MYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNLV 405
MYAKCG L +AE LFN+T+ TKDE++WN++IA YMQNG AKEAI +FHQMR E+ PN V
Sbjct: 575 MYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSV 634
Query: 406 SIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAKC 546
+ VSVLPAAAYLAA REGM+ H +I+ G S+ LVGNSLIDMYAKC
Sbjct: 635 TFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKC 681
Score = 109 bits (273), Expect(2) = 2e-62
Identities = 49/76 (64%), Positives = 63/76 (82%)
Frame = +3
Query: 3 NALINGYAQSGDAHRAMEMFHQLRLEGHCPDCGTMVGVLPACVLMDDLNQGTCVHGQIIK 182
N+LINGYAQ GD + A++MF++LRL PD GTMVGV+PAC L++DL+QGTC+HG I+K
Sbjct: 500 NSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVK 559
Query: 183 SGFTADLHVKNALIDV 230
GF +D HVKNALID+
Sbjct: 560 LGFESDCHVKNALIDM 575
Score = 92.0 bits (227), Expect(2) = 4e-23
Identities = 47/108 (43%), Positives = 67/108 (62%)
Frame = +1
Query: 223 SMYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNL 402
SMYAKCG T A FN ++D ++WN LI GY Q G AI F+++R ++ P+
Sbjct: 473 SMYAKCGFFTAALTTFNRMS-SRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDA 531
Query: 403 VSIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAKC 546
++V V+PA A L + +G +HG +++ G ES V N+LIDMYAKC
Sbjct: 532 GTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKC 579
Score = 41.2 bits (95), Expect(2) = 4e-23
Identities = 20/76 (26%), Positives = 40/76 (52%)
Frame = +3
Query: 3 NALINGYAQSGDAHRAMEMFHQLRLEGHCPDCGTMVGVLPACVLMDDLNQGTCVHGQIIK 182
+A+I Q+G A+ +F +++ + P+ T++ +LPAC + L G +H +K
Sbjct: 399 SAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVK 458
Query: 183 SGFTADLHVKNALIDV 230
+ +DL AL+ +
Sbjct: 459 ADMDSDLSTGTALVSM 474
Score = 65.9 bits (159), Expect(2) = 3e-21
Identities = 34/81 (41%), Positives = 47/81 (58%)
Frame = +1
Query: 226 MYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNLV 405
MYAKCG L +E LFNE + KD +SWN +++GY +G AI F M+ +Q + V
Sbjct: 677 MYAKCGQLDYSEKLFNEMD-HKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSV 735
Query: 406 SIVSVLPAAAYLAAIREGMSL 468
S VSVL A + + EG +
Sbjct: 736 SFVSVLSACRHAGLVEEGRKI 756
Score = 60.8 bits (146), Expect(2) = 3e-21
Identities = 31/76 (40%), Positives = 43/76 (56%)
Frame = +3
Query: 3 NALINGYAQSGDAHRAMEMFHQLRLEGHCPDCGTMVGVLPACVLMDDLNQGTCVHGQIIK 182
N +I Y Q+G A A+ FHQ+RLE P+ T V VLPA + +G H II+
Sbjct: 602 NVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQ 661
Query: 183 SGFTADLHVKNALIDV 230
GF ++ V N+LID+
Sbjct: 662 MGFLSNTLVGNSLIDM 677
Score = 73.2 bits (178), Expect(2) = 6e-19
Identities = 40/107 (37%), Positives = 63/107 (58%)
Frame = +1
Query: 226 MYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNLV 405
MY+K GDL A +F++ +D ++WN +IAG Q+ EA+ F M+ ++P+ V
Sbjct: 173 MYSKMGDLKRAREVFDKMP-KRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSV 231
Query: 406 SIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAKC 546
S++++ P L+ I S+HGYV R S+ V N LID+Y+KC
Sbjct: 232 SLLNLFPGICKLSNIELCRSIHGYVFRRDFSSA--VSNGLIDLYSKC 276
Score = 45.8 bits (107), Expect(2) = 6e-19
Identities = 24/76 (31%), Positives = 41/76 (53%)
Frame = +3
Query: 3 NALINGYAQSGDAHRAMEMFHQLRLEGHCPDCGTMVGVLPACVLMDDLNQGTCVHGQIIK 182
N++I Y +S + A+EM++ + +G PD T VL AC +L +G HG+I +
Sbjct: 98 NSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDR 157
Query: 183 SGFTADLHVKNALIDV 230
G D+ + L+D+
Sbjct: 158 RGLERDVFIGAGLVDM 173
Score = 88.6 bits (218), Expect = 6e-16
Identities = 39/107 (36%), Positives = 72/107 (67%)
Frame = +1
Query: 226 MYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNLV 405
MYAKCG+ A+ LF + +D ++W+ +IA +Q G +EA+ F +M+++ ++PN V
Sbjct: 373 MYAKCGETEKAKQLFWGLQ-GRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRV 431
Query: 406 SIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAKC 546
+++S+LPA A L+ ++ G S+H + ++ ++S + G +L+ MYAKC
Sbjct: 432 TLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKC 478
Score = 82.4 bits (202), Expect = 4e-14
Identities = 39/107 (36%), Positives = 66/107 (61%)
Frame = +1
Query: 226 MYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNLV 405
+Y+KCGD+ A +F++ + +D++SW ++AGY NGC E + F +M+ +++ N V
Sbjct: 272 LYSKCGDVDVARRVFDQM-VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKV 330
Query: 406 SIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAKC 546
S VS AAA + +G +HG ++ ++S +LV L+ MYAKC
Sbjct: 331 SAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKC 377
Score = 58.2 bits (139), Expect = 8e-07
Identities = 36/107 (33%), Positives = 57/107 (53%)
Frame = +1
Query: 223 SMYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNL 402
S++ KC DL A +F+ T I WN +I Y ++ EA+ ++ M + L+P+
Sbjct: 74 SLFHKC-DL--ARSVFDSTP-NPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDK 129
Query: 403 VSIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAK 543
+ VL A ++EG+ HG + R GLE V +G L+DMY+K
Sbjct: 130 YTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSK 176
>emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 154 bits (390), Expect(2) = 2e-62
Identities = 73/107 (68%), Positives = 87/107 (81%)
Frame = +1
Query: 226 MYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNLV 405
MYAKCG L +AE LFN+T+ TKDE++WN++IA YMQNG AKEAI +FHQMR E+ PN V
Sbjct: 575 MYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSV 634
Query: 406 SIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAKC 546
+ VSVLPAAAYLAA REGM+ H +I+ G S+ LVGNSLIDMYAKC
Sbjct: 635 TFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKC 681
Score = 109 bits (273), Expect(2) = 2e-62
Identities = 49/76 (64%), Positives = 63/76 (82%)
Frame = +3
Query: 3 NALINGYAQSGDAHRAMEMFHQLRLEGHCPDCGTMVGVLPACVLMDDLNQGTCVHGQIIK 182
N+LINGYAQ GD + A++MF++LRL PD GTMVGV+PAC L++DL+QGTC+HG I+K
Sbjct: 500 NSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVK 559
Query: 183 SGFTADLHVKNALIDV 230
GF +D HVKNALID+
Sbjct: 560 LGFESDCHVKNALIDM 575
Score = 92.0 bits (227), Expect(2) = 4e-23
Identities = 47/108 (43%), Positives = 67/108 (62%)
Frame = +1
Query: 223 SMYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNL 402
SMYAKCG T A FN ++D ++WN LI GY Q G AI F+++R ++ P+
Sbjct: 473 SMYAKCGFFTAALTTFNRMS-SRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDA 531
Query: 403 VSIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAKC 546
++V V+PA A L + +G +HG +++ G ES V N+LIDMYAKC
Sbjct: 532 GTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKC 579
Score = 41.2 bits (95), Expect(2) = 4e-23
Identities = 20/76 (26%), Positives = 40/76 (52%)
Frame = +3
Query: 3 NALINGYAQSGDAHRAMEMFHQLRLEGHCPDCGTMVGVLPACVLMDDLNQGTCVHGQIIK 182
+A+I Q+G A+ +F +++ + P+ T++ +LPAC + L G +H +K
Sbjct: 399 SAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVK 458
Query: 183 SGFTADLHVKNALIDV 230
+ +DL AL+ +
Sbjct: 459 ADMDSDLSTGTALVSM 474
Score = 65.9 bits (159), Expect(2) = 3e-21
Identities = 34/81 (41%), Positives = 47/81 (58%)
Frame = +1
Query: 226 MYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNLV 405
MYAKCG L +E LFNE + KD +SWN +++GY +G AI F M+ +Q + V
Sbjct: 677 MYAKCGQLXYSEKLFNEMD-HKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSV 735
Query: 406 SIVSVLPAAAYLAAIREGMSL 468
S VSVL A + + EG +
Sbjct: 736 SFVSVLSACRHXGLVEEGRKI 756
Score = 60.8 bits (146), Expect(2) = 3e-21
Identities = 31/76 (40%), Positives = 43/76 (56%)
Frame = +3
Query: 3 NALINGYAQSGDAHRAMEMFHQLRLEGHCPDCGTMVGVLPACVLMDDLNQGTCVHGQIIK 182
N +I Y Q+G A A+ FHQ+RLE P+ T V VLPA + +G H II+
Sbjct: 602 NVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQ 661
Query: 183 SGFTADLHVKNALIDV 230
GF ++ V N+LID+
Sbjct: 662 MGFLSNTLVGNSLIDM 677
Score = 73.2 bits (178), Expect(2) = 6e-19
Identities = 40/107 (37%), Positives = 63/107 (58%)
Frame = +1
Query: 226 MYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNLV 405
MY+K GDL A +F++ +D ++WN +IAG Q+ EA+ F M+ ++P+ V
Sbjct: 173 MYSKMGDLKRAREVFDKMP-KRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSV 231
Query: 406 SIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAKC 546
S++++ P L+ I S+HGYV R S+ V N LID+Y+KC
Sbjct: 232 SLLNLFPGICKLSNIELCRSIHGYVFRRDFSSA--VSNGLIDLYSKC 276
Score = 45.8 bits (107), Expect(2) = 6e-19
Identities = 24/76 (31%), Positives = 41/76 (53%)
Frame = +3
Query: 3 NALINGYAQSGDAHRAMEMFHQLRLEGHCPDCGTMVGVLPACVLMDDLNQGTCVHGQIIK 182
N++I Y +S + A+EM++ + +G PD T VL AC +L +G HG+I +
Sbjct: 98 NSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDR 157
Query: 183 SGFTADLHVKNALIDV 230
G D+ + L+D+
Sbjct: 158 RGLERDVFIGAGLVDM 173
Score = 88.6 bits (218), Expect = 6e-16
Identities = 39/107 (36%), Positives = 72/107 (67%)
Frame = +1
Query: 226 MYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNLV 405
MYAKCG+ A+ LF + +D ++W+ +IA +Q G +EA+ F +M+++ ++PN V
Sbjct: 373 MYAKCGETEKAKQLFWGLQ-GRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRV 431
Query: 406 SIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAKC 546
+++S+LPA A L+ ++ G S+H + ++ ++S + G +L+ MYAKC
Sbjct: 432 TLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKC 478
Score = 82.4 bits (202), Expect = 4e-14
Identities = 39/107 (36%), Positives = 66/107 (61%)
Frame = +1
Query: 226 MYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNLV 405
+Y+KCGD+ A +F++ + +D++SW ++AGY NGC E + F +M+ +++ N V
Sbjct: 272 LYSKCGDVDVARRVFDQM-VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKV 330
Query: 406 SIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAKC 546
S VS AAA + +G +HG ++ ++S +LV L+ MYAKC
Sbjct: 331 SAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKC 377
Score = 58.2 bits (139), Expect = 8e-07
Identities = 36/107 (33%), Positives = 57/107 (53%)
Frame = +1
Query: 223 SMYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNL 402
S++ KC DL A +F+ T I WN +I Y ++ EA+ ++ M + L+P+
Sbjct: 74 SLFHKC-DL--ARSVFDSTP-NPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDK 129
Query: 403 VSIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAK 543
+ VL A ++EG+ HG + R GLE V +G L+DMY+K
Sbjct: 130 YTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSK 176
>ref|XP_002311156.1| predicted protein [Populus trichocarpa] gi|222850976|gb|EEE88523.1|
predicted protein [Populus trichocarpa]
Length = 535
Score = 139 bits (351), Expect(2) = 2e-54
Identities = 66/107 (61%), Positives = 84/107 (78%)
Frame = +1
Query: 226 MYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNLV 405
MYAKCG L+ AE LF+ T KDE+SWN++IAGYM +G A +A AF QM+ E++QPN+V
Sbjct: 234 MYAKCGSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIV 293
Query: 406 SIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAKC 546
+IV+VLPA A+L+A+R GM+LH YVIR G +S VGN LIDMYAKC
Sbjct: 294 TIVTVLPAVAHLSALRAGMTLHAYVIRMGFQSKTPVGNCLIDMYAKC 340
Score = 98.2 bits (243), Expect(2) = 2e-54
Identities = 45/76 (59%), Positives = 61/76 (80%)
Frame = +3
Query: 3 NALINGYAQSGDAHRAMEMFHQLRLEGHCPDCGTMVGVLPACVLMDDLNQGTCVHGQIIK 182
NA+INGYAQ G+ A+EMFH+L+L P+ GTMVG+LPA L++DL+QG+C+HG+IIK
Sbjct: 159 NAMINGYAQIGEPFPALEMFHKLQLSELNPNSGTMVGLLPAFALLNDLDQGSCIHGKIIK 218
Query: 183 SGFTADLHVKNALIDV 230
GF ++ HVK ALID+
Sbjct: 219 CGFESECHVKTALIDM 234
Score = 89.0 bits (219), Expect(2) = 5e-22
Identities = 48/108 (44%), Positives = 64/108 (59%)
Frame = +1
Query: 223 SMYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNL 402
SMYAKCG A LFN KD ++WN +I GY Q G A+ FH+++ L PN
Sbjct: 132 SMYAKCGFFALALTLFNRMPC-KDVVTWNAMINGYAQIGEPFPALEMFHKLQLSELNPNS 190
Query: 403 VSIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAKC 546
++V +LPA A L + +G +HG +I+ G ES V +LIDMYAKC
Sbjct: 191 GTMVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAKC 238
Score = 40.4 bits (93), Expect(2) = 5e-22
Identities = 21/76 (27%), Positives = 38/76 (50%)
Frame = +3
Query: 3 NALINGYAQSGDAHRAMEMFHQLRLEGHCPDCGTMVGVLPACVLMDDLNQGTCVHGQIIK 182
+A+I + QSG A+ +F ++ EG + ++ LPAC + L G +H +K
Sbjct: 58 SAIIAAFVQSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVK 117
Query: 183 SGFTADLHVKNALIDV 230
+ D+ V AL+ +
Sbjct: 118 ANVDLDISVGTALVSM 133
Score = 58.2 bits (139), Expect(2) = 6e-17
Identities = 30/81 (37%), Positives = 48/81 (59%)
Frame = +1
Query: 226 MYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNLV 405
MYAKCG L +E +F+E + KD +SWN+++AGY +G AI F +M+ ++ +
Sbjct: 336 MYAKCGWLDHSEKIFHEMK-NKDTVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLDSF 394
Query: 406 SIVSVLPAAAYLAAIREGMSL 468
S ++VL A + I EG +
Sbjct: 395 SFINVLSACRHAGLIGEGRKI 415
Score = 54.3 bits (129), Expect(2) = 6e-17
Identities = 30/76 (39%), Positives = 41/76 (53%)
Frame = +3
Query: 3 NALINGYAQSGDAHRAMEMFHQLRLEGHCPDCGTMVGVLPACVLMDDLNQGTCVHGQIIK 182
N +I GY SG A A F Q++LE P+ T+V VLPA + L G +H +I+
Sbjct: 261 NVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAHLSALRAGMTLHAYVIR 320
Query: 183 SGFTADLHVKNALIDV 230
GF + V N LID+
Sbjct: 321 MGFQSKTPVGNCLIDM 336
Score = 91.3 bits (225), Expect = 9e-17
Identities = 41/108 (37%), Positives = 74/108 (68%)
Frame = +1
Query: 223 SMYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNL 402
+MYA+CG++ TA+ LF E + +D ++W+ +IA ++Q+G +EA+ F M++E LQ N
Sbjct: 31 TMYARCGEVDTAKQLFQEIK-GRDLVAWSAIIAAFVQSGYPQEALSLFRSMQNEGLQANK 89
Query: 403 VSIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAKC 546
V ++S LPA A +++++ G S+H ++ ++ + VG +L+ MYAKC
Sbjct: 90 VILLSSLPACAEVSSLKLGKSMHCCAVKANVDLDISVGTALVSMYAKC 137
>ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488067|gb|AES69270.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 944
Score = 129 bits (324), Expect(2) = 1e-51
Identities = 59/107 (55%), Positives = 80/107 (74%)
Frame = +1
Query: 226 MYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNLV 405
MYAKCG L + E LF T+ KDE+SWN++IAGY+ NG + EAI F +M+ E+++PNLV
Sbjct: 545 MYAKCGSLCSVERLFLLTKHVKDEVSWNVMIAGYLHNGYSNEAISTFRRMKLENVRPNLV 604
Query: 406 SIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAKC 546
+ V++LPA +YL+ +RE M+ H +IR G S L+GNSLIDMYAKC
Sbjct: 605 TFVTILPAVSYLSILREAMAFHTCIIRMGFLSCTLIGNSLIDMYAKC 651
Score = 99.4 bits (246), Expect(2) = 1e-51
Identities = 45/76 (59%), Positives = 59/76 (77%)
Frame = +3
Query: 3 NALINGYAQSGDAHRAMEMFHQLRLEGHCPDCGTMVGVLPACVLMDDLNQGTCVHGQIIK 182
N LING+ + GD H A+EMF++L+L G PD GTMVG+ AC +MDDL+ GTC+HG I K
Sbjct: 470 NTLINGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDDLDLGTCLHGGIEK 529
Query: 183 SGFTADLHVKNALIDV 230
SGF +D+HVK AL+D+
Sbjct: 530 SGFESDIHVKVALMDM 545
Score = 68.2 bits (165), Expect(2) = 2e-17
Identities = 40/107 (37%), Positives = 63/107 (58%)
Frame = +1
Query: 226 MYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNLV 405
M+ K G L A +F++ + KD + WN +I+G Q+ EA+ F +M+ E + + V
Sbjct: 143 MFCKMGCLDNARNVFDKMPV-KDGVCWNAMISGLSQSLNPCEALEMFWRMQMEGFEVDKV 201
Query: 406 SIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAKC 546
SI+++ PA + L + S+HGYV+R + +V NSLIDMY KC
Sbjct: 202 SILNLAPAVSRLGDVGCCKSIHGYVVRRSI--CGVVSNSLIDMYCKC 246
Score = 46.2 bits (108), Expect(2) = 2e-17
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +3
Query: 3 NALINGYAQSGDAHRAMEMFHQLRLEGHCPDCGTMVGVLPACVLMDDLNQGTCVHGQIIK 182
N+ I Y++ H+A+ ++H + G PD T VL AC D ++G ++ I+
Sbjct: 68 NSFIKAYSKFHHFHKAINLYHTILKIGLKPDKFTFNFVLKACTSALDFHEGVNIYKDIVF 127
Query: 183 SGFTADLHVKNALIDV-CKV 239
+G D+++ +LID+ CK+
Sbjct: 128 NGLECDVYIGTSLIDMFCKM 147
Score = 60.8 bits (146), Expect(2) = 5e-16
Identities = 31/81 (38%), Positives = 48/81 (59%)
Frame = +1
Query: 226 MYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNLV 405
MYAKCG L +E F+E E KD ISWN +++ Y +G + A+ F M+ +++ + V
Sbjct: 647 MYAKCGQLRYSEKCFHEME-NKDTISWNAMLSAYAMHGQGELAVALFSVMQESNVRVDSV 705
Query: 406 SIVSVLPAAAYLAAIREGMSL 468
S +SVL A + I+EG +
Sbjct: 706 SYISVLSACRHSGLIQEGWDI 726
Score = 48.5 bits (114), Expect(2) = 5e-16
Identities = 25/76 (32%), Positives = 42/76 (55%)
Frame = +3
Query: 3 NALINGYAQSGDAHRAMEMFHQLRLEGHCPDCGTMVGVLPACVLMDDLNQGTCVHGQIIK 182
N +I GY +G ++ A+ F +++LE P+ T V +LPA + L + H II+
Sbjct: 572 NVMIAGYLHNGYSNEAISTFRRMKLENVRPNLVTFVTILPAVSYLSILREAMAFHTCIIR 631
Query: 183 SGFTADLHVKNALIDV 230
GF + + N+LID+
Sbjct: 632 MGFLSCTLIGNSLIDM 647
Score = 85.5 bits (210), Expect = 5e-15
Identities = 37/107 (34%), Positives = 69/107 (64%)
Frame = +1
Query: 226 MYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNLV 405
MY KCGD+ +A+ +F+ + +D++SW ++AGY++NGC E + H+MR +++ N V
Sbjct: 242 MYCKCGDVHSAQRVFDRMGV-RDDVSWATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKV 300
Query: 406 SIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAKC 546
++V+ L A + + +G ++ Y ++ GL S ++V ++ MYAKC
Sbjct: 301 AVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKC 347
Score = 64.3 bits (155), Expect = 1e-08
Identities = 37/108 (34%), Positives = 61/108 (56%)
Frame = +1
Query: 223 SMYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNL 402
SMY + T A LFN ++ KD + WN LI G+ + G A+ F++++ + P+
Sbjct: 443 SMYIRFELFTYAMTLFNRMQI-KDIVVWNTLINGFTKYGDPHLALEMFNRLQLSGILPDS 501
Query: 403 VSIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAKC 546
++V + A A + + G LHG + ++G ES + V +L+DMYAKC
Sbjct: 502 GTMVGLFSACAIMDDLDLGTCLHGGIEKSGFESDIHVKVALMDMYAKC 549
Score = 60.5 bits (145), Expect = 2e-07
Identities = 30/106 (28%), Positives = 57/106 (53%)
Frame = +1
Query: 226 MYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNLV 405
MYAKCG+L A LF E +D ++W+ ++ ++ G +E + F M+ E L+P+
Sbjct: 343 MYAKCGELKKARELFLSLE-GRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDKA 401
Query: 406 SIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAK 543
+ ++ ++ I G +H Y I+ +ES + + +L+ MY +
Sbjct: 402 ILSILVSGCTEISNIGLGKIMHCYAIKADMESDISMVTTLVSMYIR 447
>ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Glycine max]
Length = 887
Score = 139 bits (350), Expect(2) = 2e-51
Identities = 64/106 (60%), Positives = 83/106 (78%)
Frame = +1
Query: 226 MYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNLV 405
MYAKCG L TAE LF+ + KDE+SWN++IAGY+ NGCA EAI F+QM+ ES++PNLV
Sbjct: 574 MYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLV 633
Query: 406 SIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAK 543
+ V++LPA +YL+ +RE M+ H +IR G SS L+GNSLIDMYAK
Sbjct: 634 TFVTILPAVSYLSILREAMAFHACIIRMGFISSTLIGNSLIDMYAK 679
Score = 88.6 bits (218), Expect(2) = 2e-51
Identities = 42/76 (55%), Positives = 54/76 (71%)
Frame = +3
Query: 3 NALINGYAQSGDAHRAMEMFHQLRLEGHCPDCGTMVGVLPACVLMDDLNQGTCVHGQIIK 182
N LING+ + GD A+EMF +L+L G PD GTMV +L AC L+DDL G C HG IIK
Sbjct: 499 NTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIK 558
Query: 183 SGFTADLHVKNALIDV 230
+G +++HVK ALID+
Sbjct: 559 NGIESEMHVKVALIDM 574
Score = 81.6 bits (200), Expect(2) = 3e-20
Identities = 35/107 (32%), Positives = 67/107 (62%)
Frame = +1
Query: 226 MYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNLV 405
MY+KCG++ A +F++ + KD+ISW ++AGY+ +GC E + +M+ + ++ N +
Sbjct: 271 MYSKCGEVKLAHQIFDQMWV-KDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKI 329
Query: 406 SIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAKC 546
S+V+ + AA + +G +H Y ++ G+ S ++V ++ MYAKC
Sbjct: 330 SVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKC 376
Score = 42.0 bits (97), Expect(2) = 3e-20
Identities = 23/77 (29%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = +3
Query: 3 NALINGYAQSGDAHRAMEMFHQLRL-EGHCPDCGTMVGVLPACVLMDDLNQGTCVHGQII 179
NA+I+G +QS + A+E+F ++++ EG PD +++ + PA ++D++ +HG ++
Sbjct: 197 NAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVV 256
Query: 180 KSGFTADLHVKNALIDV 230
+ V N+LID+
Sbjct: 257 RRCVFG--VVSNSLIDM 271
Score = 76.3 bits (186), Expect(2) = 2e-17
Identities = 42/108 (38%), Positives = 64/108 (59%)
Frame = +1
Query: 223 SMYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNL 402
SMY +C A LFN KD ++WN LI G+ + G + A+ F +++ +QP+
Sbjct: 472 SMYTRCKSFMYAMTLFNRMHY-KDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDS 530
Query: 403 VSIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAKC 546
++VS+L A A L + G+ HG +I+ G+ES + V +LIDMYAKC
Sbjct: 531 GTMVSLLSACALLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKC 578
Score = 37.7 bits (86), Expect(2) = 2e-17
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = +3
Query: 3 NALINGYAQSGDAHRAMEMFHQLRLEGHCPDCGTMVGVLPACVLMDDLNQGTCVHGQIIK 182
+A ++ Q+G A+ +F +++ EG PD + ++ AC + G +H +IK
Sbjct: 398 SAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIK 457
Query: 183 SGFTADLHVKNALIDV 230
+ +D+ V L+ +
Sbjct: 458 ADMGSDISVATTLVSM 473
Score = 72.4 bits (176), Expect(2) = 4e-16
Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Frame = +1
Query: 226 MYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMR-SESLQPNL 402
MY K G L A +F++ KD SWN +I+G Q+ EA+ F +M+ E ++P+
Sbjct: 171 MYCKMGHLDNARKVFDKMP-GKDVASWNAMISGLSQSSNPCEALEIFQRMQMEEGVEPDS 229
Query: 403 VSIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAKC 546
VSI+++ PA + L + S+HGYV+R + +V NSLIDMY+KC
Sbjct: 230 VSILNLAPAVSRLEDVDSCKSIHGYVVRRCVFG--VVSNSLIDMYSKC 275
Score = 56.2 bits (134), Expect(2) = 4e-16
Identities = 30/81 (37%), Positives = 47/81 (58%)
Frame = +1
Query: 226 MYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNLV 405
MYAK G L+ +E F+E E K ISWN +++GY +G + A+ F M+ + + V
Sbjct: 676 MYAKSGQLSYSEKCFHEME-NKGTISWNAMLSGYAMHGQGEVALALFSLMQETHVPVDSV 734
Query: 406 SIVSVLPAAAYLAAIREGMSL 468
S +SVL A + I+EG ++
Sbjct: 735 SYISVLSACRHAGLIQEGRNI 755
Score = 53.5 bits (127), Expect(2) = 4e-16
Identities = 27/76 (35%), Positives = 43/76 (56%)
Frame = +3
Query: 3 NALINGYAQSGDAHRAMEMFHQLRLEGHCPDCGTMVGVLPACVLMDDLNQGTCVHGQIIK 182
N +I GY +G A+ A+ F+Q++LE P+ T V +LPA + L + H II+
Sbjct: 601 NVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAMAFHACIIR 660
Query: 183 SGFTADLHVKNALIDV 230
GF + + N+LID+
Sbjct: 661 MGFISSTLIGNSLIDM 676
Score = 37.4 bits (85), Expect(2) = 4e-16
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +3
Query: 3 NALINGYAQSGDAHRAMEMFHQLRLEGHCPDCGTMVGVLPACVLMDDLNQGTCVHGQIIK 182
N+LI Y++ A++ + + G PD T VL AC D ++G +H I
Sbjct: 96 NSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFHEGVAIHQDIAS 155
Query: 183 SGFTADLHVKNALIDV-CKV 239
D+ + L+D+ CK+
Sbjct: 156 RELECDVFIGTGLVDMYCKM 175
Score = 74.3 bits (181), Expect(2) = 2e-13
Identities = 37/108 (34%), Positives = 63/108 (58%)
Frame = +1
Query: 223 SMYAKCGDLTTAELLFNETELTKDEISWNILIAGYMQNGCAKEAICAFHQMRSESLQPNL 402
SMYAKCG+L A+ F E +D + W+ ++ +Q G EA+ F +M+ E L+P+
Sbjct: 371 SMYAKCGELKKAKEFFLSLE-GRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDK 429
Query: 403 VSIVSVLPAAAYLAAIREGMSLHGYVIRTGLESSVLVGNSLIDMYAKC 546
+ S++ A A +++ R G +H YVI+ + S + V +L+ MY +C
Sbjct: 430 TILSSLVSACAEISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRC 477
Score = 25.8 bits (55), Expect(2) = 2e-13
Identities = 14/74 (18%), Positives = 35/74 (47%)
Frame = +3
Query: 9 LINGYAQSGDAHRAMEMFHQLRLEGHCPDCGTMVGVLPACVLMDDLNQGTCVHGQIIKSG 188
++ GY G +++ +++ + + ++V + A DL +G VH ++ G
Sbjct: 299 MMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLG 358
Query: 189 FTADLHVKNALIDV 230
T+D+ V ++ +
Sbjct: 359 MTSDIVVATPIVSM 372