BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022461
         (253 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004168984.1| PREDICTED: pentatricopeptide repeat-containi...    73   3e-11
ref|XP_004146598.1| PREDICTED: pentatricopeptide repeat-containi...    73   3e-11
ref|XP_002531596.1| pentatricopeptide repeat-containing protein,...    69   3e-10
ref|XP_002330624.1| predicted protein [Populus trichocarpa] gi|2...    67   2e-09
ref|XP_004168986.1| PREDICTED: pentatricopeptide repeat-containi...    65   7e-09

>ref|XP_004168984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 461

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 35/69 (50%), Positives = 49/69 (71%)
 Frame = +3

Query: 45  RALFYTTDTTPLRYDLYDRIDPVRDQSVSIVPVLDQWLKEGRNATKDDLIYIINTLRFYK 224
           R+ F    +T ++ +LY RI PV D ++S+ P+LDQW+ EGR   +D+L +II  LR YK
Sbjct: 16  RSEFVNFYSTVVKDNLYRRISPVGDPNISVTPLLDQWVLEGRLVQQDELRHIIKELRVYK 75

Query: 225 RFRHALEIS 251
           RF+HALEIS
Sbjct: 76  RFKHALEIS 84


>ref|XP_004146598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 227

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 35/69 (50%), Positives = 49/69 (71%)
 Frame = +3

Query: 45  RALFYTTDTTPLRYDLYDRIDPVRDQSVSIVPVLDQWLKEGRNATKDDLIYIINTLRFYK 224
           R+ F    +T ++ +LY RI PV D ++S+ P+LDQW+ EGR   +D+L +II  LR YK
Sbjct: 16  RSEFVNFYSTVVKDNLYRRISPVGDPNISVTPLLDQWVLEGRLVQQDELRHIIKELRVYK 75

Query: 225 RFRHALEIS 251
           RF+HALEIS
Sbjct: 76  RFKHALEIS 84


>ref|XP_002531596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528792|gb|EEF30799.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 300

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 11/82 (13%)
 Frame = +3

Query: 39  LSRALFYTTDTTPLRY-----------DLYDRIDPVRDQSVSIVPVLDQWLKEGRNATKD 185
           +  +LFY+T  T  +             LY RI PV D  VSIVP+LDQW++EG++  KD
Sbjct: 23  MGSSLFYSTTPTSSQKWFRERGKDNLNQLYRRISPVGDPKVSIVPILDQWIEEGKSVNKD 82

Query: 186 DLIYIINTLRFYKRFRHALEIS 251
            L   I  LR+ KR+ HALEIS
Sbjct: 83  QLQVFIKELRYCKRYTHALEIS 104


>ref|XP_002330624.1| predicted protein [Populus trichocarpa] gi|222872228|gb|EEF09359.1|
           predicted protein [Populus trichocarpa]
          Length = 501

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
 Frame = +3

Query: 12  TNPILVL--PSLSRALFYTTDTTPLRYDLYDRIDPVRDQSVSIVPVLDQWLKEGRNATKD 185
           +NP L L    + RAL ++TDTT + + L  RI  V D  V ++PV+++W++EG+  T  
Sbjct: 7   SNPSLCLHIDGVLRALCFSTDTTAISHSLNRRISMVEDPMVPVIPVIEKWVQEGQVVTNS 66

Query: 186 DLIYIINTLRFYKRFRHALEIS 251
           DL + I  LR   RF HAL+IS
Sbjct: 67  DLKHFIRKLRKIHRFSHALQIS 88


>ref|XP_004168986.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 191

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 31/68 (45%), Positives = 44/68 (64%)
 Frame = +3

Query: 45  RALFYTTDTTPLRYDLYDRIDPVRDQSVSIVPVLDQWLKEGRNATKDDLIYIINTLRFYK 224
           R  F    +T ++  LY RI PV D ++S+ P+LDQW+ E     +D+L +II  LR YK
Sbjct: 16  RREFVNFYSTVVKDSLYRRISPVGDPNISVTPLLDQWVLESGLVQQDELRHIIKELRVYK 75

Query: 225 RFRHALEI 248
           RF+HALE+
Sbjct: 76  RFKHALEV 83