BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022385
         (980 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containi...   398   e-108
ref|XP_002326162.1| predicted protein [Populus trichocarpa] gi|2...   358   8e-97
ref|XP_003554352.1| PREDICTED: pentatricopeptide repeat-containi...   346   4e-93
ref|XP_004142106.1| PREDICTED: pentatricopeptide repeat-containi...   338   9e-91
ref|NP_195903.2| pentatricopeptide repeat-containing protein [Ar...   337   3e-90

>ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
            chloroplastic [Vitis vinifera]
            gi|297741486|emb|CBI32618.3| unnamed protein product
            [Vitis vinifera]
          Length = 842

 Score =  398 bits (1022), Expect = e-108
 Identities = 201/325 (61%), Positives = 255/325 (78%), Gaps = 2/325 (0%)
 Frame = -1

Query: 980  GNTNNNVCIGAADSSENGITNLRSCYS-SPYMNFAKSVPFAPTIATFNILMKACGTDYYR 804
            G T N   +G     +N IT++ +C S S +++F+KS PF PT  T+NILMKACGTDYYR
Sbjct: 458  GGTGNGNTVGVELKHQNCITSMPNCLSNSHHLSFSKSFPFTPTTTTYNILMKACGTDYYR 517

Query: 803  AKTLMDEIKLAGLSPNQISWSIMIDICGRTGNVGGSIQALKAMRDNSIKPDVIAYTTAIK 624
            AK LMDE+K AGLSPN ISWSI+IDICG TGN+ G+++ LK MR+  IKPDV+AYTTAIK
Sbjct: 518  AKALMDEMKTAGLSPNHISWSILIDICGGTGNIVGAVRILKTMREAGIKPDVVAYTTAIK 577

Query: 623  ACVENGSLKLAFSLFEEMKRYGVKPNLVTYNTLLRARSRYGSLHEVKQCLAIYQHMRKAG 444
             CVE+ +LK+AFSLF EMKRY ++PNLVTYNTLLRARSRYGSLHEV+QCLAIYQHMRKAG
Sbjct: 578  YCVESKNLKIAFSLFAEMKRYQIQPNLVTYNTLLRARSRYGSLHEVQQCLAIYQHMRKAG 637

Query: 443  YSPYDYFLKELVEEWCEGVITYNNQDEGVVGLSDSLDKTDREKSQSLLLEKVAAHLQRDI 264
            Y   DY+LKEL+EEWCEGVI  NN ++       S+++ D  + QSLLLEKVAAHLQ+ +
Sbjct: 638  YKSNDYYLKELIEEWCEGVIQDNNLNQSKF---SSVNRADWGRPQSLLLEKVAAHLQKSV 694

Query: 263  AQSVAVDLRGLTKVEARIVVLSVLRMIKEKYRIGDPIEDDVDIILEVREESAGATNY-SE 87
            A+S+A+DL+GLT+VEARIVVL+VLRMIKE Y +G PI+DD+ IIL +++  A    + S 
Sbjct: 695  AESLAIDLQGLTQVEARIVVLAVLRMIKENYILGHPIKDDILIILGIKKVDANLVEHESP 754

Query: 86   VQDAVVKLLRDELGLCIISTGLSVS 12
            V+ A++KLL+DELGL +   G  ++
Sbjct: 755  VKGAIIKLLQDELGLEVAFAGPKIA 779


>ref|XP_002326162.1| predicted protein [Populus trichocarpa] gi|222833355|gb|EEE71832.1|
            predicted protein [Populus trichocarpa]
          Length = 828

 Score =  358 bits (920), Expect = 8e-97
 Identities = 179/290 (61%), Positives = 231/290 (79%)
 Frame = -1

Query: 902  SSPYMNFAKSVPFAPTIATFNILMKACGTDYYRAKTLMDEIKLAGLSPNQISWSIMIDIC 723
            +S ++NF K  PF PT AT+++LMKACG+DY+RAK LMDE+K  G+SPN ISWSI+IDIC
Sbjct: 496  NSHHLNFIKKFPFTPTPATYHMLMKACGSDYHRAKALMDEMKTVGISPNHISWSILIDIC 555

Query: 722  GRTGNVGGSIQALKAMRDNSIKPDVIAYTTAIKACVENGSLKLAFSLFEEMKRYGVKPNL 543
            G +GNV G++Q LK MR   ++PDV+AYTTAIK CVE  +LKLAFSLF EMKR  + PNL
Sbjct: 556  GVSGNVSGAVQILKNMRMAGVEPDVVAYTTAIKVCVETKNLKLAFSLFAEMKRCQINPNL 615

Query: 542  VTYNTLLRARSRYGSLHEVKQCLAIYQHMRKAGYSPYDYFLKELVEEWCEGVITYNNQDE 363
            VTYNTLLRAR+RYGSL EV+QCLAIYQ MRKAGY   DY+LK+L+EEWCEGVI  NNQ +
Sbjct: 616  VTYNTLLRARTRYGSLREVQQCLAIYQDMRKAGYKSNDYYLKQLIEEWCEGVIQDNNQIQ 675

Query: 362  GVVGLSDSLDKTDREKSQSLLLEKVAAHLQRDIAQSVAVDLRGLTKVEARIVVLSVLRMI 183
            G      S  +TD  + +SLLLEKVAAHLQ +I++++A+DL+GLTKVEARIVVL+VLRMI
Sbjct: 676  GGFA---SCKRTDLGRPRSLLLEKVAAHLQNNISENLAIDLQGLTKVEARIVVLAVLRMI 732

Query: 182  KEKYRIGDPIEDDVDIILEVREESAGATNYSEVQDAVVKLLRDELGLCII 33
            KE Y +G  +++D+ I L+V +    +   SEV++A+++LLR+ELGL ++
Sbjct: 733  KENYTLGYSVKEDMWITLDVSKVDPASKRDSEVKNAIIELLRNELGLEVL 782


>ref|XP_003554352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
            chloroplastic-like [Glycine max]
          Length = 811

 Score =  346 bits (888), Expect = 4e-93
 Identities = 176/301 (58%), Positives = 227/301 (75%), Gaps = 1/301 (0%)
 Frame = -1

Query: 941  SSENGITNLRSCYSSPYMNFAKSVPFAPTIATFNILMKACGTDYYRAKTLMDEIKLAGLS 762
            S  NGI+N      S  +NFA+  PF PT  T+NIL+KACGTDYY AK L+ E++  GLS
Sbjct: 457  SIPNGISN------SHILNFAERFPFTPTTTTYNILLKACGTDYYHAKALIKEMETVGLS 510

Query: 761  PNQISWSIMIDICGRTGNVGGSIQALKAMRDNSIKPDVIAYTTAIKACVENGSLKLAFSL 582
            PNQISWSI+IDICG + NV G+I+ LK M D  IKPDVIAYTTAIK CVE+ +   A +L
Sbjct: 511  PNQISWSILIDICGASSNVEGAIEILKTMGDAGIKPDVIAYTTAIKVCVESKNFMQALTL 570

Query: 581  FEEMKRYGVKPNLVTYNTLLRARSRYGSLHEVKQCLAIYQHMRKAGYSPYDYFLKELVEE 402
            +EEMK Y ++PN VTYNTLL+ARS+YG LHEV+QCLAIYQ MRKAGY P DY+L+EL+EE
Sbjct: 571  YEEMKCYQIRPNWVTYNTLLKARSKYGFLHEVQQCLAIYQDMRKAGYKPNDYYLEELIEE 630

Query: 401  WCEGVITYNNQDEGVVGLSDSLDKTDREKSQSLLLEKVAAHLQRDIAQSVAVDLRGLTKV 222
            WCEGVI  N + +G      S +K++ E+ QSLLLEK+AAHL + +A  +A+D++GLTKV
Sbjct: 631  WCEGVIQNNREKQGEF---SSSNKSESERPQSLLLEKIAAHLLKRVADILAIDVQGLTKV 687

Query: 221  EARIVVLSVLRMIKEKYRIGDPIEDDVDIIL-EVREESAGATNYSEVQDAVVKLLRDELG 45
            EAR+VVL+VLRMIKE Y +G  + DD+ II+   + +   + +  EVQ+A++KLLR+ELG
Sbjct: 688  EARLVVLAVLRMIKENYGLGHSVNDDILIIIGATKVDENPSKHILEVQEAIIKLLRNELG 747

Query: 44   L 42
            L
Sbjct: 748  L 748


>ref|XP_004142106.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
            chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  338 bits (868), Expect = 9e-91
 Identities = 178/324 (54%), Positives = 238/324 (73%), Gaps = 2/324 (0%)
 Frame = -1

Query: 977  NTNNNVCIGAADSSENGITNLRSCYSSPY-MNFAKSVPFAPTIATFNILMKACGTDYYRA 801
            +T+NN  + A  +S+   T + +  S  + ++F  +  F PTI T+NILMKACGTDYY A
Sbjct: 478  STDNN--LDADSTSQLCNTKMPNAPSHVHQISFVGNFAFKPTITTYNILMKACGTDYYHA 535

Query: 800  KTLMDEIKLAGLSPNQISWSIMIDICGRTGNVGGSIQALKAMRDNSIKPDVIAYTTAIKA 621
            K LM+E+K  GL+PN ISWSI++DICGR+ +V  ++Q L  MR   + PDV+AYTTAIK 
Sbjct: 536  KALMEEMKSVGLTPNHISWSILVDICGRSHDVESAVQILTTMRMAGVDPDVVAYTTAIKV 595

Query: 620  CVENGSLKLAFSLFEEMKRYGVKPNLVTYNTLLRARSRYGSLHEVKQCLAIYQHMRKAGY 441
            CVE  + KLAFSLFEEMKR+ ++PNLVTY+TLLRARS YGSLHEV+QCLAIYQ MRK+G+
Sbjct: 596  CVEGKNWKLAFSLFEEMKRFEIQPNLVTYSTLLRARSTYGSLHEVQQCLAIYQDMRKSGF 655

Query: 440  SPYDYFLKELVEEWCEGVITYNNQDEGVVGLSDSLDKTDREKSQSLLLEKVAAHLQRDIA 261
               D++LKEL+ EWCEGVI  NNQ    +      +K D  K + L+LEKVA HLQ+  A
Sbjct: 656  KSNDHYLKELIAEWCEGVIQKNNQQPVEI---TPCNKIDIGKPRCLILEKVADHLQKSFA 712

Query: 260  QSVAVDLRGLTKVEARIVVLSVLRMIKEKYRIGDPIEDDVDIILEVRE-ESAGATNYSEV 84
            +S+ +DL+ LTKVEARIVVL+VLRMIKE Y +G+ ++DD+ IILEV + E+       EV
Sbjct: 713  ESLTIDLQELTKVEARIVVLAVLRMIKENYALGESVKDDIFIILEVNKVETDLVPQNFEV 772

Query: 83   QDAVVKLLRDELGLCIISTGLSVS 12
            +DA+ +LL+DELGL ++ TG +++
Sbjct: 773  RDAITRLLQDELGLEVLPTGPTIA 796



 Score = 56.6 bits (135), Expect = 9e-06
 Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 4/161 (2%)
 Frame = -1

Query: 860 PTIATFNILMKACGTDYYRAKTLMDEIKLAGLSPNQISWSIMIDICGRTGNVGGSIQALK 681
           P I  FN LM     D      L   ++  G+  +  S++I++  C   G V  +    +
Sbjct: 294 PNIFVFNSLMNVNAHDLNYTFQLYKNMQNLGVPADMASYNILLKACCLAGRVDLAQDIYR 353

Query: 680 AMRD----NSIKPDVIAYTTAIKACVENGSLKLAFSLFEEMKRYGVKPNLVTYNTLLRAR 513
            ++       +K DV  Y+T +K   +    K+A  + E+M+  GV PN+VT+++L+ + 
Sbjct: 354 EVKHLETTGVLKLDVFTYSTIVKVFADAKLWKMALRVKEDMQSAGVSPNMVTWSSLISSC 413

Query: 512 SRYGSLHEVKQCLAIYQHMRKAGYSPYDYFLKELVEEWCEG 390
           +  G    V+  + +++ M  AG  P       L+    EG
Sbjct: 414 ANSGL---VELAIQLFEEMVSAGCEPNTQCCNTLLHACVEG 451


>ref|NP_195903.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|332278227|sp|Q8GYL7.3|PP361_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At5g02830, chloroplastic; Flags: Precursor
            gi|332003140|gb|AED90523.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 852

 Score =  337 bits (863), Expect = 3e-90
 Identities = 173/294 (58%), Positives = 218/294 (74%), Gaps = 1/294 (0%)
 Frame = -1

Query: 902  SSPYMNFAKSVPFAPTIATFNILMKACGTDYYRAKTLMDEIKLAGLSPNQISWSIMIDIC 723
            +SPY+  +K   F PT AT+NIL+KACGTDYYR K LMDE+K  GLSPNQI+WS +ID+C
Sbjct: 510  NSPYIQASKRFCFKPTTATYNILLKACGTDYYRGKELMDEMKSLGLSPNQITWSTLIDMC 569

Query: 722  GRTGNVGGSIQALKAMRDNSIKPDVIAYTTAIKACVENGSLKLAFSLFEEMKRYGVKPNL 543
            G +G+V G+++ L+ M     +PDV+AYTTAIK C EN  LKLAFSLFEEM+RY +KPN 
Sbjct: 570  GGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKICAENKCLKLAFSLFEEMRRYQIKPNW 629

Query: 542  VTYNTLLRARSRYGSLHEVKQCLAIYQHMRKAGYSPYDYFLKELVEEWCEGVITYNNQDE 363
            VTYNTLL+ARS+YGSL EV+QCLAIYQ MR AGY P D+FLKEL+EEWCEGVI  N Q +
Sbjct: 630  VTYNTLLKARSKYGSLLEVRQCLAIYQDMRNAGYKPNDHFLKELIEEWCEGVIQENGQSQ 689

Query: 362  GVVGLSDSLDKTDREKSQSLLLEKVAAHLQRDIAQSVAVDLRGLTKVEARIVVLSVLRMI 183
              +  SD  +  +  +  SLL+EKVA H+Q   A ++A+DL+GLTK+EAR+VVL+VLRMI
Sbjct: 690  DKI--SDQ-EGDNAGRPVSLLIEKVATHMQERTAGNLAIDLQGLTKIEARLVVLAVLRMI 746

Query: 182  KEKYRIGDPIEDDVDIILEVRE-ESAGATNYSEVQDAVVKLLRDELGLCIISTG 24
            KE Y  GD + DDV II+   E  +        VQ+A+VKLLRDEL L ++  G
Sbjct: 747  KEDYMRGDVVIDDVLIIIGTDEANTVSGKQEITVQEALVKLLRDELSLVVLPAG 800