BLASTX nr result

ID: Coptis24_contig00022379 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022379
         (616 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271403.1| PREDICTED: uncharacterized protein LOC100259...   176   4e-42
emb|CAN60871.1| hypothetical protein VITISV_016379 [Vitis vinifera]   174   1e-41
ref|XP_002309083.1| predicted protein [Populus trichocarpa] gi|2...   157   1e-36
ref|XP_002323520.1| predicted protein [Populus trichocarpa] gi|2...   157   1e-36
emb|CAN65208.1| hypothetical protein VITISV_043546 [Vitis vinifera]   142   6e-32

>ref|XP_002271403.1| PREDICTED: uncharacterized protein LOC100259726 [Vitis vinifera]
          Length = 303

 Score =  176 bits (445), Expect = 4e-42
 Identities = 107/221 (48%), Positives = 133/221 (60%), Gaps = 16/221 (7%)
 Frame = -1

Query: 616 PPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQSP----------------NSQIES 485
           PPRSYSCSFC+REFRSAQALGGHMNVHRRDRARLKQSP                ++Q   
Sbjct: 51  PPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKQSPSPHNEILHHHHQNHHNHTQHPC 110

Query: 484 STLGVQFPPQVCSLVFSPNPNSNSNILAPAISASRVPAPTSTLDKCNDQTLVKSPSYSST 305
           S+LG Q+P QVC+ V++PNPNS+ ++LA   S SRV AP  T + C +Q LV  P YSS+
Sbjct: 111 SSLGFQYPSQVCTFVYNPNPNSDPDVLASPSSLSRVSAP-KTQENCIEQILV--PPYSSS 167

Query: 304 KVHELQMGSLFSSPATHTDSIAIKVINQSDKYKLEAENNLRGQEIGLGVCREDLKPDSEV 125
            + E +    FS   ++ +S A   I  SD  K E E + R  E G     + +KPD  V
Sbjct: 168 IIQEHKKRPPFSPAPSNPNSGADGYICVSDP-KAEGEKSSRILESGCWAKGDYIKPDLSV 226

Query: 124 SLNMVTSRTRPTRSGGDNEDEVISSKRRKIGANSLPFFLKP 2
           SLN V  RTR T S G  E+ +   +RR    + LPFFLKP
Sbjct: 227 SLNWVVRRTRQTASSGGMEETISCKRRRTDSPSLLPFFLKP 267


>emb|CAN60871.1| hypothetical protein VITISV_016379 [Vitis vinifera]
          Length = 297

 Score =  174 bits (441), Expect = 1e-41
 Identities = 106/221 (47%), Positives = 133/221 (60%), Gaps = 16/221 (7%)
 Frame = -1

Query: 616 PPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQSP----------------NSQIES 485
           PPRSYSCSFC+REFRSAQALGGHMNVHRRDRARLKQSP                ++Q   
Sbjct: 51  PPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKQSPSPHNEILHHHHQNHHNHTQHPC 110

Query: 484 STLGVQFPPQVCSLVFSPNPNSNSNILAPAISASRVPAPTSTLDKCNDQTLVKSPSYSST 305
           S+LG Q+P QVC+ V++PNPNS+ ++LA   S SRV AP  T + C +Q LV  P YSS+
Sbjct: 111 SSLGFQYPSQVCTFVYNPNPNSDPDVLASPSSLSRVSAP-KTQENCIEQILV--PPYSSS 167

Query: 304 KVHELQMGSLFSSPATHTDSIAIKVINQSDKYKLEAENNLRGQEIGLGVCREDLKPDSEV 125
            + E +    FS   ++ +S A   I  SD  K E + + R  E G     + +KPD  V
Sbjct: 168 IIQEHKKRPPFSPAPSNPNSGADGYICVSDP-KAEGKKSSRILESGCWAKGDYIKPDLSV 226

Query: 124 SLNMVTSRTRPTRSGGDNEDEVISSKRRKIGANSLPFFLKP 2
           SLN V  RTR T S G  E+ +   +RR    + LPFFLKP
Sbjct: 227 SLNWVVRRTRQTASSGGMEETISCKRRRTDSPSLLPFFLKP 267


>ref|XP_002309083.1| predicted protein [Populus trichocarpa] gi|222855059|gb|EEE92606.1|
           predicted protein [Populus trichocarpa]
          Length = 301

 Score =  157 bits (398), Expect = 1e-36
 Identities = 102/220 (46%), Positives = 130/220 (59%), Gaps = 16/220 (7%)
 Frame = -1

Query: 616 PPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLK--------------QSPNSQIES-- 485
           PPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLK              QSP+S +++  
Sbjct: 51  PPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQPPSPHNEILQQEHQSPHSHLQNPY 110

Query: 484 STLGVQFPPQVCSLVFSPNPNSNSNILAPAISASRVPAPTSTLDKCNDQTLVKSPSYSST 305
            + G Q+P Q+C+LV+SPNPNS+   +A   S+SRV + T T + C  +     P +SS 
Sbjct: 111 KSFGFQYPSQLCNLVYSPNPNSDPGPIASPPSSSRV-STTPTQENCRIKGFF--PPFSSF 167

Query: 304 KVHELQMGSLFSSPATHTDSIAIKVINQSDKYKLEAENNLRGQEIGLGVCREDLKPDSEV 125
            V E Q  S  SSP   T     +  + SD    E E N R  E G       +K D  V
Sbjct: 168 IVEEQQKRSPRSSPPPRTKLATERCYHISD-LSTEGEQNSRKVESGCTGKVNRVKTDLSV 226

Query: 124 SLNMVTSRTRPTRSGGDNEDEVISSKRRKIGANSLPFFLK 5
           SLN+V  RTRP+ +  D+E++  S K+R+I  +SLPF LK
Sbjct: 227 SLNLVVRRTRPSIT--DSEEDPSSCKKRRIDKSSLPFSLK 264


>ref|XP_002323520.1| predicted protein [Populus trichocarpa] gi|222868150|gb|EEF05281.1|
           predicted protein [Populus trichocarpa]
          Length = 300

 Score =  157 bits (397), Expect = 1e-36
 Identities = 102/220 (46%), Positives = 127/220 (57%), Gaps = 16/220 (7%)
 Frame = -1

Query: 616 PPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQSPNSQIE----------------S 485
           PPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQSP+   E                 
Sbjct: 51  PPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQSPSPHNEILHHEHQKPLNHLQNPY 110

Query: 484 STLGVQFPPQVCSLVFSPNPNSNSNILAPAISASRVPAPTSTLDKCNDQTLVKSPSYSST 305
           ++ G Q+P Q+C+L + PNPNSN   +    S+SRV + TST +   D+T+  SP ++S 
Sbjct: 111 TSFGFQYPSQLCTLDYCPNPNSNPGFIPSRTSSSRV-SITSTQENFCDKTI--SPPFTSF 167

Query: 304 KVHELQMGSLFSSPATHTDSIAIKVINQSDKYKLEAENNLRGQEIGLGVCREDLKPDSEV 125
            V E Q  S  SSP   T     K          E E N R  E G     + ++ D  V
Sbjct: 168 IVEEQQKRSHKSSPPPQTK--LTKERCHISSLSTEGEQNSRKIESGCRAKVDYVQTDLSV 225

Query: 124 SLNMVTSRTRPTRSGGDNEDEVISSKRRKIGANSLPFFLK 5
           SLN+V  RTRP+ S  D  +E +S K+R+I  +SLPFFLK
Sbjct: 226 SLNLVVRRTRPSIS--DCGEEPMSCKKRRIDKSSLPFFLK 263


>emb|CAN65208.1| hypothetical protein VITISV_043546 [Vitis vinifera]
          Length = 272

 Score =  142 bits (357), Expect = 6e-32
 Identities = 84/207 (40%), Positives = 122/207 (58%), Gaps = 3/207 (1%)
 Frame = -1

Query: 616 PPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLK---QSPNSQIESSTLGVQFPPQVCS 446
           PPRSYSCSFCRREFR+AQALGGHMNVHRRDRARLK    SP+ +I   ++G + P Q+C+
Sbjct: 46  PPRSYSCSFCRREFRTAQALGGHMNVHRRDRARLKLQPPSPHKEISGKSMGXEDPDQICT 105

Query: 445 LVFSPNPNSNSNILAPAISASRVPAPTSTLDKCNDQTLVKSPSYSSTKVHELQMGSLFSS 266
           LV +PNPNS   ++A  +S SRV +  S  + C + +++      S+ V E   G+    
Sbjct: 106 LVCNPNPNSIHGVVASPLSPSRV-SVLSXQENCEELSMI------SSTVQEHHKGTFSCF 158

Query: 265 PATHTDSIAIKVINQSDKYKLEAENNLRGQEIGLGVCREDLKPDSEVSLNMVTSRTRPTR 86
           P + ++S+ I+V +  D  + E EN ++ ++  +       K D  +SLN+V        
Sbjct: 159 PQSWSNSVPIRVFSIPDSKRRE-ENPMKKRKSRVXDEANSSKSDLSMSLNLVI------- 210

Query: 85  SGGDNEDEVISSKRRKIGANSLPFFLK 5
             G   ++ +S KRR+     LPFFLK
Sbjct: 211 --GPGXEQTVSCKRRRTDQIPLPFFLK 235


Top