BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022361
         (1093 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containi...   296   8e-78
ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containi...   293   4e-77
emb|CAN76851.1| hypothetical protein VITISV_005999 [Vitis vinifera]   291   2e-76
ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containi...   291   3e-76
emb|CAN76850.1| hypothetical protein VITISV_005998 [Vitis vinifera]   288   1e-75

>ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
           mitochondrial-like [Vitis vinifera]
          Length = 382

 Score =  296 bits (757), Expect = 8e-78
 Identities = 144/273 (52%), Positives = 191/273 (69%)
 Frame = +3

Query: 3   ISLYGKVGMLEHAKKTFDELPELKCERTVKSFNALLTACIESKNYDKVEKLFRELPLKLN 182
           I+LYGK GM +HA K FDE+P+ KCER+V SFNALL AC+ SK +DKVE  F ELP KL+
Sbjct: 101 ITLYGKSGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVNSKKFDKVEGFFSELPSKLS 160

Query: 183 VVPDEYSYTIVIQALCEMGNLGNALSLLDEMEGKGVKPNLFTFNVLLRAFYEDGRFLNSE 362
           V PD  SY IVI  LC+MG++ +A+ +LDEME K ++P+L TFN LL   Y  GRFL+ E
Sbjct: 161 VEPDLVSYNIVINGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNGCYTSGRFLDGE 220

Query: 363 MIWARMEKKQIVPDIRSYNAKLRGLVVAGKIKEAVKLVESLKTKETKPNTISYNALIRGY 542
            IW RMEKK I+PDIRSYNAKL GLV   ++ E + LVE ++TK  KP+  S+NALI+G+
Sbjct: 221 KIWGRMEKKNILPDIRSYNAKLVGLVSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGF 280

Query: 543 CNDGKLDEAKRVYDDLLKDELVPNRWTYEILLPAVCEKGDYVYALKLCEKSLENSCRIEA 722
           CNDGK+DEA   Y  + +++ +P++ T+  L+P  CEKG +  A +LC++     C ++ 
Sbjct: 281 CNDGKVDEATNWYGKMRENDCLPDKLTFATLVPLYCEKGSFDQAFELCKEIFNRKCLVDE 340

Query: 723 GLVQTVVEGLVKMSKVDEAKNLVSLGRHKGYNK 821
            L+Q  V+GLVK  KV EAK LV LG    Y +
Sbjct: 341 VLLQNAVDGLVKGGKVVEAKKLVQLGNSNSYRR 373


>ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
           mitochondrial [Vitis vinifera]
          Length = 383

 Score =  293 bits (751), Expect = 4e-77
 Identities = 146/274 (53%), Positives = 192/274 (70%), Gaps = 1/274 (0%)
 Frame = +3

Query: 3   ISLYGKVGMLEHAKKTFDELPELKCERTVKSFNALLTACIESKNYDKVEKLFRELPLKLN 182
           ISLYGK GM +HA K FDE+P+ KCER+V SFNALL AC+ SK +DKVE  F ELP KL+
Sbjct: 101 ISLYGKSGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVHSKKFDKVEGFFSELPSKLS 160

Query: 183 VVPDEYSYTIVIQALCEMGNLGNALSLLDEMEGKGVKPNLFTFNVLLRAFYEDGRFLNSE 362
           V PD  SY IVI+ LC+MG++ +A+ +LDEME K ++P+L TFN LL   Y  GRFL+ E
Sbjct: 161 VEPDLVSYNIVIKGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNGCYTSGRFLDGE 220

Query: 363 MIWARMEKKQIVPDIRSYNAKLRGLVVAGK-IKEAVKLVESLKTKETKPNTISYNALIRG 539
            IW RMEKK I+PDIRSYNAKL GLV + K + E + LVE ++TK  KP+  S+NALI+G
Sbjct: 221 KIWGRMEKKNILPDIRSYNAKLVGLVSSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKG 280

Query: 540 YCNDGKLDEAKRVYDDLLKDELVPNRWTYEILLPAVCEKGDYVYALKLCEKSLENSCRIE 719
           +CNDGK+DEA   Y  + +++  P++ T+  L+P  CEKG +  A +LC++     C ++
Sbjct: 281 FCNDGKVDEATNWYGKMRENDCSPDKLTFATLVPLYCEKGSFDQAFELCKEIFNRKCLVD 340

Query: 720 AGLVQTVVEGLVKMSKVDEAKNLVSLGRHKGYNK 821
             L+Q  V+GLVK  KV EAK LV LG    Y +
Sbjct: 341 EVLLQNAVDGLVKGGKVVEAKKLVQLGNSNSYRR 374


>emb|CAN76851.1| hypothetical protein VITISV_005999 [Vitis vinifera]
          Length = 383

 Score =  291 bits (745), Expect = 2e-76
 Identities = 145/274 (52%), Positives = 191/274 (69%), Gaps = 1/274 (0%)
 Frame = +3

Query: 3   ISLYGKVGMLEHAKKTFDELPELKCERTVKSFNALLTACIESKNYDKVEKLFRELPLKLN 182
           ISLYGK GM +HA K FDE+P+ KCER+V SFN LL AC+ SK +DKVE  F ELP KL+
Sbjct: 101 ISLYGKSGMFDHAFKVFDEMPDQKCERSVLSFNXLLGACVXSKKFDKVEGFFSELPSKLS 160

Query: 183 VVPDEYSYTIVIQALCEMGNLGNALSLLDEMEGKGVKPNLFTFNVLLRAFYEDGRFLNSE 362
           V PD  SY IVI+ LC+MG++ +A+ +LDEME K ++P+L TFN LL   Y  GRFL+ E
Sbjct: 161 VEPDLVSYNIVIKGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNRXYTSGRFLDGE 220

Query: 363 MIWARMEKKQIVPDIRSYNAKLRGLVVAGK-IKEAVKLVESLKTKETKPNTISYNALIRG 539
            IW RMEKK I+PDIRSYNAKL GLV + K + E + LVE ++TK  KP+  S+NALI+G
Sbjct: 221 KIWGRMEKKNILPDIRSYNAKLVGLVSSEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKG 280

Query: 540 YCNDGKLDEAKRVYDDLLKDELVPNRWTYEILLPAVCEKGDYVYALKLCEKSLENSCRIE 719
           +CNDGK+DEA   Y  + +++  P++ T+  L+P  CEKG +  A +LC++     C ++
Sbjct: 281 FCNDGKVDEATNWYGKMRENDCSPDKLTFATLVPLYCEKGSFDQAFELCKEIFNRKCLVD 340

Query: 720 AGLVQTVVEGLVKMSKVDEAKNLVSLGRHKGYNK 821
             L+Q  V+GLVK  KV EAK LV LG    Y +
Sbjct: 341 EVLLQNAVDGLVKGGKVVEAKKLVQLGNSNSYRR 374


>ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13150-like [Vitis vinifera]
          Length = 379

 Score =  291 bits (744), Expect = 3e-76
 Identities = 138/271 (50%), Positives = 194/271 (71%)
 Frame = +3

Query: 3   ISLYGKVGMLEHAKKTFDELPELKCERTVKSFNALLTACIESKNYDKVEKLFRELPLKLN 182
           ++LYGK GM EHA K FDELP+L CERTV SFNALL+ C+ SK +DK++  F+ELP  L 
Sbjct: 99  MTLYGKAGMFEHAHKLFDELPKLNCERTVVSFNALLSVCVNSKKFDKIDGFFQELPGNLG 158

Query: 183 VVPDEYSYTIVIQALCEMGNLGNALSLLDEMEGKGVKPNLFTFNVLLRAFYEDGRFLNSE 362
           VVPD  SY I++ A CEMG+L +ALS+LDEME  G++P+L TFN LL AFY++G + + E
Sbjct: 159 VVPDVVSYNIIVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGE 218

Query: 363 MIWARMEKKQIVPDIRSYNAKLRGLVVAGKIKEAVKLVESLKTKETKPNTISYNALIRGY 542
            IW  M+K  + P++RSYNAKLRG++   ++ EAV+L++ +KT   KP+  + N+L++G+
Sbjct: 219 KIWDLMKKNNVAPNVRSYNAKLRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGF 278

Query: 543 CNDGKLDEAKRVYDDLLKDELVPNRWTYEILLPAVCEKGDYVYALKLCEKSLENSCRIEA 722
           CN G L+EAKR Y ++ ++EL P R TY  L+P + EKGD+  A +LC++       IE 
Sbjct: 279 CNAGNLEEAKRWYSEIARNELPPVRATYMTLIPFLVEKGDFDMATELCKEVCSRRWLIEP 338

Query: 723 GLVQTVVEGLVKMSKVDEAKNLVSLGRHKGY 815
            L+Q V+EGLVK SK++EA  LV L + K +
Sbjct: 339 ALLQQVLEGLVKESKIEEATELVELAKLKKF 369


>emb|CAN76850.1| hypothetical protein VITISV_005998 [Vitis vinifera]
          Length = 340

 Score =  288 bits (738), Expect = 1e-75
 Identities = 137/271 (50%), Positives = 193/271 (71%)
 Frame = +3

Query: 3   ISLYGKVGMLEHAKKTFDELPELKCERTVKSFNALLTACIESKNYDKVEKLFRELPLKLN 182
           ++LYGK GM EHA K FDE P+L CERTV SFNALL+ C+ SK +DK++  F+ELP  L 
Sbjct: 60  MTLYGKAGMFEHAHKLFDEXPKLNCERTVVSFNALLSVCVXSKKFDKIDGFFQELPGNLG 119

Query: 183 VVPDEYSYTIVIQALCEMGNLGNALSLLDEMEGKGVKPNLFTFNVLLRAFYEDGRFLNSE 362
           VVPD  SY I++ A CEMG+L +ALS+LDEME  G++P+L TFN LL AFY++G + + E
Sbjct: 120 VVPDVVSYNIIVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGE 179

Query: 363 MIWARMEKKQIVPDIRSYNAKLRGLVVAGKIKEAVKLVESLKTKETKPNTISYNALIRGY 542
            IW  M+K  + P++RSYNAKLRG++   ++ EAV+L++ +KT   KP+  + N+L++G+
Sbjct: 180 KIWDLMKKNNVAPNVRSYNAKLRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGF 239

Query: 543 CNDGKLDEAKRVYDDLLKDELVPNRWTYEILLPAVCEKGDYVYALKLCEKSLENSCRIEA 722
           CN G L+EAKR Y ++ ++EL P R TY  L+P + EKGD+  A +LC++       IE 
Sbjct: 240 CNAGNLEEAKRWYSEIARNELPPVRATYMTLIPFLVEKGDFDMATELCKEVCSRRWLIEP 299

Query: 723 GLVQTVVEGLVKMSKVDEAKNLVSLGRHKGY 815
            L+Q V+EGLVK SK++EA  LV L + K +
Sbjct: 300 ALLQQVLEGLVKESKIEEATELVELAKLKKF 330